RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 FAM69CQ0P6D2 419 aa8.84□□□□□ -0.99
CLK1-210ENST00000473565 PLA2R1Q13018 1463 aa8.84□□□□□ -0.99
CLK1-210ENST00000473565 RGL3Q3MIN7 710 aa8.84□□□□□ -0.99
CLK1-210ENST00000473565 TSPOAP1O95153 1857 aa8.83□□□□□ -1
CLK1-210ENST00000473565 ZNF518AQ6AHZ1 1483 aa8.83□□□□□ -1
CLK1-210ENST00000473565 MAGI2Q86UL8 1455 aa8.83□□□□□ -1
CLK1-210ENST00000473565 POGZQ7Z3K3 1410 aa8.83□□□□□ -1
CLK1-210ENST00000473565 DCAF11Q8TEB1 546 aa8.82□□□□□ -1
CLK1-210ENST00000473565 CCDC144AA2RUR9 1427 aa8.82□□□□□ -1
CLK1-210ENST00000473565 MAP3K4Q9Y6R4 1608 aa8.81□□□□□ -1
CLK1-210ENST00000473565 DHX29Q7Z478 1369 aaKnown RBP8.81□□□□□ -1
CLK1-210ENST00000473565 CFAP74Q9C0B2 1584 aa8.81□□□□□ -1
CLK1-210ENST00000473565 EIF4G2P78344 907 aaKnown RBP eCLIP8.8□□□□□ -1
CLK1-210ENST00000473565 E9PCH4 1651 aa8.8□□□□□ -1
CLK1-210ENST00000473565 DIP2BQ9P265 1576 aa8.8□□□□□ -1
CLK1-210ENST00000473565 KDM5CP41229 1560 aa8.79□□□□□ -1
CLK1-210ENST00000473565 C11orf95C9JLR9 678 aaPredicted RBP8.79□□□□□ -1
CLK1-210ENST00000473565 DEPDC5O75140 1603 aa8.79□□□□□ -1
CLK1-210ENST00000473565 ABCA6Q8N139 1617 aa8.79□□□□□ -1
CLK1-210ENST00000473565 A2MP01023 1474 aa8.79□□□□□ -1
CLK1-210ENST00000473565 NEO1Q92859 1461 aa8.79□□□□□ -1
CLK1-210ENST00000473565 GGT6Q6P531 493 aa8.79□□□□□ -1
CLK1-210ENST00000473565 HECW2Q9P2P5 1572 aa8.79□□□□□ -1
CLK1-210ENST00000473565 MROH1Q8NDA8 1641 aa8.79□□□□□ -1
CLK1-210ENST00000473565 FRMPD1Q5SYB0 1578 aa8.79□□□□□ -1
CLK1-210ENST00000473565 WASHC2AQ641Q2 1341 aa8.78□□□□□ -1
CLK1-210ENST00000473565 CFAP65Q6ZU64 1925 aaKnown RBP8.77□□□□□ -1
CLK1-210ENST00000473565 YEATS2Q9ULM3 1422 aa8.77□□□□□ -1.01
CLK1-210ENST00000473565 ATP10AO60312 1499 aa8.77□□□□□ -1.01
CLK1-210ENST00000473565 MLH3Q9UHC1 1453 aa8.77□□□□□ -1.01
CLK1-210ENST00000473565 RICTORQ6R327 1708 aa8.77□□□□□ -1.01
CLK1-210ENST00000473565 KANK1Q14678 1352 aa8.77□□□□□ -1.01
CLK1-210ENST00000473565 GLI2P10070 1586 aa8.77□□□□□ -1.01
CLK1-210ENST00000473565 CEP152O94986 1710 aa8.76□□□□□ -1.01
CLK1-210ENST00000473565 UGGT1Q9NYU2 1555 aa8.76□□□□□ -1.01
CLK1-210ENST00000473565 PRDM15P57071 1507 aaPredicted RBP8.76□□□□□ -1.01
CLK1-210ENST00000473565 EIF2AK4Q9P2K8 1649 aaKnown RBP8.76□□□□□ -1.01
CLK1-210ENST00000473565 TET3O43151 1660 aa8.75□□□□□ -1.01
CLK1-210ENST00000473565 PPRC1Q5VV67 1664 aaKnown RBP8.75□□□□□ -1.01
CLK1-210ENST00000473565 VWDEQ8N2E2 1590 aa8.75□□□□□ -1.01
CLK1-210ENST00000473565 POLR3GLQ9BT43 218 aa8.75□□□□□ -1.01
CLK1-210ENST00000473565 USP47Q96K76 1375 aa8.75□□□□□ -1.01
CLK1-210ENST00000473565 DIP2CQ9Y2E4 1556 aa8.75□□□□□ -1.01
CLK1-210ENST00000473565 SPHKAPQ2M3C7 1700 aa8.75□□□□□ -1.01
CLK1-210ENST00000473565 SPATA31E1Q6ZUB1 1445 aa8.75□□□□□ -1.01
CLK1-210ENST00000473565 NBPF1Q3BBV0 1214 aa8.75□□□□□ -1.01
CLK1-210ENST00000473565 CARD11Q9BXL7 1154 aa8.75□□□□□ -1.01
CLK1-210ENST00000473565 CLTCL1P53675 1640 aa8.74□□□□□ -1.01
CLK1-210ENST00000473565 UHRF1BP1Q6BDS2 1440 aa8.74□□□□□ -1.01
CLK1-210ENST00000473565 RALGAPBQ86X10 1494 aa8.73□□□□□ -1.01
CLK1-210ENST00000473565 KIF13AQ9H1H9 1805 aa8.73□□□□□ -1.01
CLK1-210ENST00000473565 PRAG1Q86YV5 1406 aa8.73□□□□□ -1.01
CLK1-210ENST00000473565 TRPM2O94759 1503 aa8.73□□□□□ -1.01
CLK1-210ENST00000473565 RNF17Q9BXT8 1623 aaKnown RBP8.73□□□□□ -1.01
CLK1-210ENST00000473565 BCORL1Q5H9F3 1711 aa8.73□□□□□ -1.01
CLK1-210ENST00000473565 ROCK2O75116 1388 aaKnown RBP8.72□□□□□ -1.01
CLK1-210ENST00000473565 CCDC7Q96M83 1385 aa8.72□□□□□ -1.01
CLK1-210ENST00000473565 KIF7Q2M1P5 1343 aa8.72□□□□□ -1.01
CLK1-210ENST00000473565 WASHC2CQ9Y4E1 1318 aa8.72□□□□□ -1.01
CLK1-210ENST00000473565 EFCAB6Q5THR3 1501 aa8.72□□□□□ -1.01
CLK1-210ENST00000473565 PTPRTO14522 1441 aa8.72□□□□□ -1.01
CLK1-210ENST00000473565 ST20-MTHFSA0A0A6YYL1 179 aa8.71□□□□□ -1.01
CLK1-210ENST00000473565 CNGB1Q14028 1251 aaPredicted RBP8.71□□□□□ -1.01
CLK1-210ENST00000473565 COL17A1Q9UMD9 1497 aaPredicted RBP8.71□□□□□ -1.01
CLK1-210ENST00000473565 CHGAP10645 457 aaKnown RBP8.71□□□□□ -1.02
CLK1-210ENST00000473565 TRPM1Q7Z4N2 1603 aa8.71□□□□□ -1.02
CLK1-210ENST00000473565 NPATQ14207 1427 aa8.7□□□□□ -1.02
CLK1-210ENST00000473565 ANP32CO43423 234 aa8.7□□□□□ -1.02
CLK1-210ENST00000473565 ABCC3O15438 1527 aa8.7□□□□□ -1.02
CLK1-210ENST00000473565 CENPBP07199 599 aaPredicted RBP8.69□□□□□ -1.02
CLK1-210ENST00000473565 MLECQ14165 292 aa8.69□□□□□ -1.02
CLK1-210ENST00000473565 SENP3Q9H4L4 574 aaPredicted RBP8.69□□□□□ -1.02
CLK1-210ENST00000473565 MROH2AA6NES4 1674 aa8.68□□□□□ -1.02
CLK1-210ENST00000473565 LMTK2Q8IWU2 1503 aa8.68□□□□□ -1.02
CLK1-210ENST00000473565 SIGLEC1Q9BZZ2 1709 aa8.68□□□□□ -1.02
CLK1-210ENST00000473565 CNTLNQ9NXG0 1405 aa8.68□□□□□ -1.02
CLK1-210ENST00000473565 CAMSAP1Q5T5Y3 1602 aa8.67□□□□□ -1.02
CLK1-210ENST00000473565 ZMYM4Q5VZL5 1548 aa8.67□□□□□ -1.02
CLK1-210ENST00000473565 MADDQ8WXG6 1647 aa8.67□□□□□ -1.02
CLK1-210ENST00000473565 NUTM2DQ5VT03 806 aaPredicted RBP8.67□□□□□ -1.02
CLK1-210ENST00000473565 POLR1AO95602 1720 aaPredicted RBP8.66□□□□□ -1.02
CLK1-210ENST00000473565 KIF1BO60333 1816 aa8.66□□□□□ -1.02
CLK1-210ENST00000473565 ADGRF5Q8IZF2 1346 aa8.66□□□□□ -1.02
CLK1-210ENST00000473565 SCAF1Q9H7N4 1312 aaKnown RBP8.66□□□□□ -1.02
CLK1-210ENST00000473565 FBXO31Q5XUX0 539 aaPredicted RBP8.65□□□□□ -1.02
CLK1-210ENST00000473565 GPRASP1Q5JY77 1395 aa8.64□□□□□ -1.03
CLK1-210ENST00000473565 CFAP70Q5T0N1 1121 aa8.64□□□□□ -1.03
CLK1-210ENST00000473565 CCDC184Q52MB2 194 aa8.64□□□□□ -1.03
CLK1-210ENST00000473565 SYNMO15061 1565 aa8.64□□□□□ -1.03
CLK1-210ENST00000473565 NOS1P29475 1434 aa8.63□□□□□ -1.03
CLK1-210ENST00000473565 TRHP20396 242 aaPredicted RBP8.63□□□□□ -1.03
CLK1-210ENST00000473565 ADGRB3O60242 1522 aa8.62□□□□□ -1.03
CLK1-210ENST00000473565 IDI1Q13907 227 aa8.62□□□□□ -1.03
CLK1-210ENST00000473565 TESK2Q96S53 571 aa8.62□□□□□ -1.03
CLK1-210ENST00000473565 DISP3Q9P2K9 1392 aa8.62□□□□□ -1.03
CLK1-210ENST00000473565 IFT172Q9UG01 1749 aa8.61□□□□□ -1.03
CLK1-210ENST00000473565 CCER2I3L3R5 266 aa8.61□□□□□ -1.03
CLK1-210ENST00000473565 PRKRIP1Q9H875 184 aaPredicted RBP8.61□□□□□ -1.03
CLK1-210ENST00000473565 CLTCQ00610 1675 aaKnown RBP8.61□□□□□ -1.03
CLK1-210ENST00000473565 LAMC1P11047 1609 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms