RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 KIF3BO15066 747 aa29.68■■■□□ 2.34
CCDC88B-206ENST00000473405 CERKQ8TCT0 537 aa29.68■■■□□ 2.34
CCDC88B-206ENST00000473405 CROCC2H7BZ55 1655 aa29.67■■■□□ 2.34
CCDC88B-206ENST00000473405 TSPY4P0CV99 314 aa29.66■■■□□ 2.34
CCDC88B-206ENST00000473405 TSPY10P0CW01 314 aa29.66■■■□□ 2.34
CCDC88B-206ENST00000473405 EIF2AK4Q9P2K8 1649 aaKnown RBP29.66■■■□□ 2.34
CCDC88B-206ENST00000473405 PTPN23Q9H3S7 1636 aa29.63■■■□□ 2.33
CCDC88B-206ENST00000473405 PZPP20742 1482 aa29.63■■■□□ 2.33
CCDC88B-206ENST00000473405 PLA2R1Q13018 1463 aa29.61■■■□□ 2.33
CCDC88B-206ENST00000473405 DNMT1P26358 1616 aaKnown RBP29.6■■■□□ 2.33
CCDC88B-206ENST00000473405 MROH1Q8NDA8 1641 aa29.6■■■□□ 2.33
CCDC88B-206ENST00000473405 ZC3H13Q5T200 1668 aaKnown RBP29.6■■■□□ 2.33
CCDC88B-206ENST00000473405 A2ML1A8K2U0 1454 aa29.59■■■□□ 2.33
CCDC88B-206ENST00000473405 LTBP4Q8N2S1 1624 aa29.59■■■□□ 2.33
CCDC88B-206ENST00000473405 TCOF1Q13428 1488 aaKnown RBP29.58■■■□□ 2.33
CCDC88B-206ENST00000473405 SHANK2Q9UPX8 1470 aa29.56■■■□□ 2.32
CCDC88B-206ENST00000473405 ABCC3O15438 1527 aa29.55■■■□□ 2.32
CCDC88B-206ENST00000473405 WASHC2CQ9Y4E1 1318 aa29.55■■■□□ 2.32
CCDC88B-206ENST00000473405 DUOX2Q9NRD8 1548 aa29.55■■■□□ 2.32
CCDC88B-206ENST00000473405 APLP2Q06481 763 aa29.54■■■□□ 2.32
CCDC88B-206ENST00000473405 FGD6Q6ZV73 1430 aa29.54■■■□□ 2.32
CCDC88B-206ENST00000473405 FBXO31Q5XUX0 539 aaPredicted RBP29.53■■■□□ 2.32
CCDC88B-206ENST00000473405 ABCC5O15440 1437 aa29.53■■■□□ 2.32
CCDC88B-206ENST00000473405 TNRQ92752 1358 aa29.52■■■□□ 2.32
CCDC88B-206ENST00000473405 CEP152O94986 1710 aa29.52■■■□□ 2.32
CCDC88B-206ENST00000473405 POLR1AO95602 1720 aaPredicted RBP29.51■■■□□ 2.32
CCDC88B-206ENST00000473405 NCKAP5LQ9HCH0 1330 aa29.51■■■□□ 2.32
CCDC88B-206ENST00000473405 DAPK1P53355 1430 aa29.48■■■□□ 2.31
CCDC88B-206ENST00000473405 PRDM15P57071 1507 aaPredicted RBP29.46■■■□□ 2.31
CCDC88B-206ENST00000473405 PKD2Q13563 968 aa29.46■■■□□ 2.31
CCDC88B-206ENST00000473405 KIF15Q9NS87 1388 aa29.46■■■□□ 2.31
CCDC88B-206ENST00000473405 SPATA31D1Q6ZQQ2 1576 aa29.46■■■□□ 2.31
CCDC88B-206ENST00000473405 NEURL4Q96JN8 1562 aa29.45■■■□□ 2.31
CCDC88B-206ENST00000473405 NLRP1Q9C000 1473 aa29.44■■■□□ 2.3
CCDC88B-206ENST00000473405 DEPDC5O75140 1603 aa29.44■■■□□ 2.3
CCDC88B-206ENST00000473405 ERBINQ96RT1 1412 aa29.43■■■□□ 2.3
CCDC88B-206ENST00000473405 IQSEC2Q5JU85 1478 aa29.42■■■□□ 2.3
CCDC88B-206ENST00000473405 ERVK-7P63135 1459 aa29.4■■■□□ 2.3
CCDC88B-206ENST00000473405 UGGT1Q9NYU2 1555 aa29.39■■■□□ 2.3
CCDC88B-206ENST00000473405 ZNF335Q9H4Z2 1342 aaPredicted RBP29.38■■■□□ 2.29
CCDC88B-206ENST00000473405 CFAP65Q6ZU64 1925 aaKnown RBP29.37■■■□□ 2.29
CCDC88B-206ENST00000473405 RRP7BPQ9NSQ0 103 aa29.35■■■□□ 2.29
CCDC88B-206ENST00000473405 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.33■■■□□ 2.293e-7■■■■■ 140.8
CCDC88B-206ENST00000473405 UBR1Q8IWV7 1749 aa29.31■■■□□ 2.28
CCDC88B-206ENST00000473405 ADGRL2O95490 1459 aa29.3■■■□□ 2.28
CCDC88B-206ENST00000473405 ARHGAP31Q2M1Z3 1444 aa29.29■■■□□ 2.28
CCDC88B-206ENST00000473405 VWDEQ8N2E2 1590 aa29.29■■■□□ 2.28
CCDC88B-206ENST00000473405 ANKRD30AQ9BXX3 1397 aa29.28■■■□□ 2.28
CCDC88B-206ENST00000473405 MED14O60244 1454 aa29.27■■■□□ 2.28
CCDC88B-206ENST00000473405 IQGAP1P46940 1657 aa29.26■■■□□ 2.27
CCDC88B-206ENST00000473405 THEMISQ8N1K5 641 aaPredicted RBP29.26■■■□□ 2.27
CCDC88B-206ENST00000473405 CHIC2Q9UKJ5 165 aa29.26■■■□□ 2.27
CCDC88B-206ENST00000473405 LMTK2Q8IWU2 1503 aa29.24■■■□□ 2.27
CCDC88B-206ENST00000473405 ANKLE2Q86XL3 938 aa29.22■■■□□ 2.27
CCDC88B-206ENST00000473405 NPHP4O75161 1426 aaPredicted RBP29.2■■■□□ 2.27
CCDC88B-206ENST00000473405 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.19■■■□□ 2.26
CCDC88B-206ENST00000473405 KANK1Q14678 1352 aa29.18■■■□□ 2.26
CCDC88B-206ENST00000473405 PIK3C2BO00750 1634 aa29.18■■■□□ 2.26
CCDC88B-206ENST00000473405 CPS1P31327 1500 aa29.18■■■□□ 2.26
CCDC88B-206ENST00000473405 EFCAB6Q5THR3 1501 aa29.18■■■□□ 2.26
CCDC88B-206ENST00000473405 FAM50AQ14320 339 aaKnown RBP29.17■■■□□ 2.26
CCDC88B-206ENST00000473405 SLIT1O75093 1534 aa29.15■■■□□ 2.26
CCDC88B-206ENST00000473405 SYNMO15061 1565 aa29.14■■■□□ 2.26
CCDC88B-206ENST00000473405 STRCP1A6NGW2 1772 aa29.14■■■□□ 2.26
CCDC88B-206ENST00000473405 ARHGAP23Q9P227 1491 aa29.14■■■□□ 2.26
CCDC88B-206ENST00000473405 KDM5AP29375 1690 aaKnown RBP29.14■■■□□ 2.26
CCDC88B-206ENST00000473405 ANKRD50Q9ULJ7 1429 aa29.11■■■□□ 2.25
CCDC88B-206ENST00000473405 SCAF11Q99590 1463 aaKnown RBP29.1■■■□□ 2.25
CCDC88B-206ENST00000473405 UBAP1LF5GYI3 381 aa29.08■■■□□ 2.25
CCDC88B-206ENST00000473405 UNC13BO14795 1591 aa29.08■■■□□ 2.25
CCDC88B-206ENST00000473405 TET3O43151 1660 aa29.06■■■□□ 2.24
CCDC88B-206ENST00000473405 NOS1P29475 1434 aa29.06■■■□□ 2.24
CCDC88B-206ENST00000473405 GCC2Q8IWJ2 1684 aa29.04■■■□□ 2.24
CCDC88B-206ENST00000473405 ADGRB3O60242 1522 aa29.01■■■□□ 2.23
CCDC88B-206ENST00000473405 LTKP29376 864 aa29.01■■■□□ 2.23
CCDC88B-206ENST00000473405 RPRD2Q5VT52 1461 aaKnown RBP29.01■■■□□ 2.23
CCDC88B-206ENST00000473405 ALKQ9UM73 1620 aa29■■■□□ 2.23
CCDC88B-206ENST00000473405 ROCK1Q13464 1354 aa29■■■□□ 2.23
CCDC88B-206ENST00000473405 TMEM2Q9UHN6 1383 aa29■■■□□ 2.23
CCDC88B-206ENST00000473405 IDI1Q13907 227 aa28.97■■■□□ 2.23
CCDC88B-206ENST00000473405 LRRC7Q96NW7 1537 aa28.97■■■□□ 2.23
CCDC88B-206ENST00000473405 MYO5BQ9ULV0 1848 aa28.96■■■□□ 2.23
CCDC88B-206ENST00000473405 IQGAP3Q86VI3 1631 aa28.95■■■□□ 2.23
CCDC88B-206ENST00000473405 TXNDC2Q86VQ3 553 aa28.95■■■□□ 2.22
CCDC88B-206ENST00000473405 E9PCH4 1651 aa28.95■■■□□ 2.22
CCDC88B-206ENST00000473405 XIRP1Q702N8 1843 aaKnown RBP28.92■■■□□ 2.22
CCDC88B-206ENST00000473405 PPARGC1BQ86YN6 1023 aaKnown RBP28.92■■■□□ 2.22
CCDC88B-206ENST00000473405 DISP3Q9P2K9 1392 aa28.9■■■□□ 2.22
CCDC88B-206ENST00000473405 STAG3Q9UJ98 1225 aa28.9■■■□□ 2.22
CCDC88B-206ENST00000473405 EID1Q9Y6B2 187 aa28.9■■■□□ 2.22
CCDC88B-206ENST00000473405 TMEM131LA2VDJ0 1609 aa28.87■■■□□ 2.21
CCDC88B-206ENST00000473405 TOM1O60784 492 aa28.87■■■□□ 2.21
CCDC88B-206ENST00000473405 SLC52A1Q9NWF4 448 aa28.87■■■□□ 2.21
CCDC88B-206ENST00000473405 PIP4K2BP78356 416 aa28.85■■■□□ 2.21
CCDC88B-206ENST00000473405 SCAF1Q9H7N4 1312 aaKnown RBP28.83■■■□□ 2.21
CCDC88B-206ENST00000473405 ITGAEP38570 1179 aa28.82■■■□□ 2.2
CCDC88B-206ENST00000473405 ZFYVE9O95405 1425 aa28.82■■■□□ 2.2
CCDC88B-206ENST00000473405 RRBP1Q9P2E9 1410 aaKnown RBP28.8■■■□□ 2.2
CCDC88B-206ENST00000473405 HSPA1LP34931 641 aa28.79■■■□□ 2.2
CCDC88B-206ENST00000473405 NWD1Q149M9 1564 aa28.78■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms