RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 SLC4A1APQ9BWU0 796 aaKnown RBP18.67■□□□□ 0.58
VPS13D-205ENST00000473099 MYT1LQ9UL68 1186 aa18.67■□□□□ 0.58
VPS13D-205ENST00000473099 FAM135AQ9P2D6 1515 aa18.67■□□□□ 0.58
VPS13D-205ENST00000473099 DHX29Q7Z478 1369 aaKnown RBP18.67■□□□□ 0.58
VPS13D-205ENST00000473099 RNF17Q9BXT8 1623 aaKnown RBP18.67■□□□□ 0.58
VPS13D-205ENST00000473099 A2MP01023 1474 aa18.65■□□□□ 0.58
VPS13D-205ENST00000473099 DIP2CQ9Y2E4 1556 aa18.65■□□□□ 0.58
VPS13D-205ENST00000473099 PRDM15P57071 1507 aaPredicted RBP18.64■□□□□ 0.57
VPS13D-205ENST00000473099 TET3O43151 1660 aa18.63■□□□□ 0.57
VPS13D-205ENST00000473099 VWDEQ8N2E2 1590 aa18.6■□□□□ 0.57
VPS13D-205ENST00000473099 REREQ9P2R6 1566 aa18.6■□□□□ 0.57
VPS13D-205ENST00000473099 ANKRD30BQ9BXX2 1392 aa18.6■□□□□ 0.57
VPS13D-205ENST00000473099 KANK1Q14678 1352 aa18.59■□□□□ 0.57
VPS13D-205ENST00000473099 MROH1Q8NDA8 1641 aa18.59■□□□□ 0.57
VPS13D-205ENST00000473099 RAPGEF3O95398 923 aa18.58■□□□□ 0.56
VPS13D-205ENST00000473099 PKD2Q13563 968 aa18.57■□□□□ 0.56
VPS13D-205ENST00000473099 RPRD2Q5VT52 1461 aaKnown RBP18.57■□□□□ 0.56
VPS13D-205ENST00000473099 ZC3H13Q5T200 1668 aaKnown RBP18.57■□□□□ 0.56
VPS13D-205ENST00000473099 TONSLQ96HA7 1378 aa18.56■□□□□ 0.56
VPS13D-205ENST00000473099 SIN3AQ96ST3 1273 aa18.56■□□□□ 0.56
VPS13D-205ENST00000473099 CEP152O94986 1710 aa18.56■□□□□ 0.56
VPS13D-205ENST00000473099 E9PCH4 1651 aa18.56■□□□□ 0.56
VPS13D-205ENST00000473099 SPHKAPQ2M3C7 1700 aa18.54■□□□□ 0.56
VPS13D-205ENST00000473099 NEUROD1Q13562 356 aa18.54■□□□□ 0.56
VPS13D-205ENST00000473099 ARHGEF40Q8TER5 1519 aa18.54■□□□□ 0.56
VPS13D-205ENST00000473099 KIF3BO15066 747 aa18.53■□□□□ 0.56
VPS13D-205ENST00000473099 LMTK2Q8IWU2 1503 aa18.53■□□□□ 0.56
VPS13D-205ENST00000473099 ATP10AO60312 1499 aa18.52■□□□□ 0.56
VPS13D-205ENST00000473099 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.52■□□□□ 0.56
VPS13D-205ENST00000473099 YEATS2Q9ULM3 1422 aa18.5■□□□□ 0.55
VPS13D-205ENST00000473099 AGLP35573 1532 aa18.5■□□□□ 0.55
VPS13D-205ENST00000473099 EFCAB6Q5THR3 1501 aa18.49■□□□□ 0.55
VPS13D-205ENST00000473099 FOXD1Q16676 465 aa18.49■□□□□ 0.55
VPS13D-205ENST00000473099 COL17A1Q9UMD9 1497 aaPredicted RBP18.49■□□□□ 0.55
VPS13D-205ENST00000473099 CAMSAP1Q5T5Y3 1602 aa18.47■□□□□ 0.55
VPS13D-205ENST00000473099 TRPM2O94759 1503 aa18.45■□□□□ 0.54
VPS13D-205ENST00000473099 KDM4FA0A1W2PPD8 638 aa18.45■□□□□ 0.54
VPS13D-205ENST00000473099 CFAP65Q6ZU64 1925 aaKnown RBP18.45■□□□□ 0.54
VPS13D-205ENST00000473099 CCDC144AA2RUR9 1427 aa18.44■□□□□ 0.54
VPS13D-205ENST00000473099 KIF1BO60333 1816 aa18.44■□□□□ 0.54
VPS13D-205ENST00000473099 PPP1R15AO75807 674 aaPredicted RBP18.43■□□□□ 0.54
VPS13D-205ENST00000473099 ABCC3O15438 1527 aa18.43■□□□□ 0.54
VPS13D-205ENST00000473099 PTPRTO14522 1441 aa18.4■□□□□ 0.54
VPS13D-205ENST00000473099 PLA2R1Q13018 1463 aa18.39■□□□□ 0.54
VPS13D-205ENST00000473099 NEURL4Q96JN8 1562 aa18.39■□□□□ 0.53
VPS13D-205ENST00000473099 PPP6R1Q9UPN7 881 aa18.39■□□□□ 0.53
VPS13D-205ENST00000473099 SIGLEC1Q9BZZ2 1709 aa18.37■□□□□ 0.53
VPS13D-205ENST00000473099 GGT6Q6P531 493 aa18.37■□□□□ 0.53
VPS13D-205ENST00000473099 ARHGAP31Q2M1Z3 1444 aa18.37■□□□□ 0.53
VPS13D-205ENST00000473099 CLTCL1P53675 1640 aa18.37■□□□□ 0.53
VPS13D-205ENST00000473099 WASHC2CQ9Y4E1 1318 aa18.35■□□□□ 0.53
VPS13D-205ENST00000473099 L3MBTL2Q969R5 705 aa18.35■□□□□ 0.53
VPS13D-205ENST00000473099 CLTCQ00610 1675 aaKnown RBP18.34■□□□□ 0.53
VPS13D-205ENST00000473099 ZNF316A6NFI3 1004 aaPredicted RBP18.33■□□□□ 0.52
VPS13D-205ENST00000473099 PREX1Q8TCU6 1659 aa18.33■□□□□ 0.52
VPS13D-205ENST00000473099 NPATQ14207 1427 aa18.32■□□□□ 0.52
VPS13D-205ENST00000473099 CNTLNQ9NXG0 1405 aa18.32■□□□□ 0.52
VPS13D-205ENST00000473099 MROH2AA6NES4 1674 aa18.31■□□□□ 0.52
VPS13D-205ENST00000473099 UHRF1BP1Q6BDS2 1440 aa18.3■□□□□ 0.52
VPS13D-205ENST00000473099 PIK3C2BO00750 1634 aa18.3■□□□□ 0.52
VPS13D-205ENST00000473099 IFT172Q9UG01 1749 aa18.28■□□□□ 0.52
VPS13D-205ENST00000473099 NOS1P29475 1434 aa18.27■□□□□ 0.52
VPS13D-205ENST00000473099 SPATA31E1Q6ZUB1 1445 aa18.27■□□□□ 0.52
VPS13D-205ENST00000473099 STAC3Q96MF2 364 aa18.27■□□□□ 0.52
VPS13D-205ENST00000473099 SYNMO15061 1565 aa18.25■□□□□ 0.51
VPS13D-205ENST00000473099 ADGRB3O60242 1522 aa18.23■□□□□ 0.51
VPS13D-205ENST00000473099 TRPM1Q7Z4N2 1603 aa18.23■□□□□ 0.51
VPS13D-205ENST00000473099 FER1L4A9Z1Z3 1794 aa18.23■□□□□ 0.51
VPS13D-205ENST00000473099 RALGAPBQ86X10 1494 aa18.23■□□□□ 0.51
VPS13D-205ENST00000473099 PPLO60437 1756 aa18.22■□□□□ 0.51
VPS13D-205ENST00000473099 POLR1AO95602 1720 aaPredicted RBP18.22■□□□□ 0.51
VPS13D-205ENST00000473099 KIAA1210Q9ULL0 1709 aa18.22■□□□□ 0.51
VPS13D-205ENST00000473099 LAMC1P11047 1609 aa18.21■□□□□ 0.51
VPS13D-205ENST00000473099 SPATA31D1Q6ZQQ2 1576 aa18.21■□□□□ 0.51
VPS13D-205ENST00000473099 UGGT1Q9NYU2 1555 aa18.21■□□□□ 0.51
VPS13D-205ENST00000473099 ESF1Q9H501 851 aaKnown RBP18.2■□□□□ 0.5
VPS13D-205ENST00000473099 MYO5BQ9ULV0 1848 aa18.2■□□□□ 0.5
VPS13D-205ENST00000473099 ERVK-7P63135 1459 aa18.2■□□□□ 0.5
VPS13D-205ENST00000473099 DCAF11Q8TEB1 546 aa18.19■□□□□ 0.5
VPS13D-205ENST00000473099 MADDQ8WXG6 1647 aa18.19■□□□□ 0.5
VPS13D-205ENST00000473099 ARID4BQ4LE39 1312 aaPredicted RBP18.19■□□□□ 0.5
VPS13D-205ENST00000473099 PRAG1Q86YV5 1406 aa18.18■□□□□ 0.5
VPS13D-205ENST00000473099 NBPF8Q3BBV2 869 aa18.17■□□□□ 0.5
VPS13D-205ENST00000473099 SLC52A1Q9NWF4 448 aa18.17■□□□□ 0.5
VPS13D-205ENST00000473099 MYOM2P54296 1465 aa18.17■□□□□ 0.5
VPS13D-205ENST00000473099 RGL3Q3MIN7 710 aa18.16■□□□□ 0.5
VPS13D-205ENST00000473099 KDM5AP29375 1690 aaKnown RBP18.15■□□□□ 0.5
VPS13D-205ENST00000473099 TMEM131LA2VDJ0 1609 aa18.14■□□□□ 0.49
VPS13D-205ENST00000473099 MLECQ14165 292 aa18.14■□□□□ 0.49
VPS13D-205ENST00000473099 ADAMTSL3P82987 1691 aa18.14■□□□□ 0.49
VPS13D-205ENST00000473099 C3P01024 1663 aa18.13■□□□□ 0.49
VPS13D-205ENST00000473099 EIF4G2P78344 907 aaKnown RBP eCLIP18.13■□□□□ 0.49
VPS13D-205ENST00000473099 KDM2AQ9Y2K7 1162 aa18.13■□□□□ 0.49
VPS13D-205ENST00000473099 RPGRIP1LQ68CZ1 1315 aa18.13■□□□□ 0.49
VPS13D-205ENST00000473099 ZNF326Q5BKZ1 582 aaKnown RBP18.11■□□□□ 0.49
VPS13D-205ENST00000473099 ZMYM3Q14202 1370 aa18.11■□□□□ 0.49
VPS13D-205ENST00000473099 GPRASP1Q5JY77 1395 aa18.09■□□□□ 0.49
VPS13D-205ENST00000473099 NRXN1Q9ULB1 1477 aa18.08■□□□□ 0.49
VPS13D-205ENST00000473099 NEXMIFQ5QGS0 1516 aa18.08■□□□□ 0.48
VPS13D-205ENST00000473099 PTPRMP28827 1452 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms