RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 MYOM3Q5VTT5 1437 aa31.19■■■□□ 2.58
COL9A3-210ENST00000472880 PLA2R1Q13018 1463 aa31.19■■■□□ 2.58
COL9A3-210ENST00000472880 MAST1Q9Y2H9 1570 aa31.18■■■□□ 2.58
COL9A3-210ENST00000472880 MIA2Q96PC5 1412 aa31.17■■■□□ 2.58
COL9A3-210ENST00000472880 PZPP20742 1482 aa31.14■■■□□ 2.58
COL9A3-210ENST00000472880 A2ML1A8K2U0 1454 aa31.14■■■□□ 2.57
COL9A3-210ENST00000472880 LTBP4Q8N2S1 1624 aa31.13■■■□□ 2.57
COL9A3-210ENST00000472880 NCKAP5LQ9HCH0 1330 aa31.13■■■□□ 2.57
COL9A3-210ENST00000472880 WASHC2CQ9Y4E1 1318 aa31.12■■■□□ 2.57
COL9A3-210ENST00000472880 TCOF1Q13428 1488 aaKnown RBP31.11■■■□□ 2.57
COL9A3-210ENST00000472880 PKD2Q13563 968 aa31.11■■■□□ 2.57
COL9A3-210ENST00000472880 TNRQ92752 1358 aa31.1■■■□□ 2.57
COL9A3-210ENST00000472880 DNMT1P26358 1616 aaKnown RBP31.09■■■□□ 2.57
COL9A3-210ENST00000472880 RNF17Q9BXT8 1623 aaKnown RBP31.09■■■□□ 2.57
COL9A3-210ENST00000472880 APLP2Q06481 763 aa31.09■■■□□ 2.57
COL9A3-210ENST00000472880 EIF2AK4Q9P2K8 1649 aaKnown RBP31.08■■■□□ 2.57
COL9A3-210ENST00000472880 FBXO31Q5XUX0 539 aaPredicted RBP31.05■■■□□ 2.56
COL9A3-210ENST00000472880 IQSEC2Q5JU85 1478 aa31.05■■■□□ 2.56
COL9A3-210ENST00000472880 ZC3H13Q5T200 1668 aaKnown RBP31.05■■■□□ 2.56
COL9A3-210ENST00000472880 PTPN23Q9H3S7 1636 aa31.01■■■□□ 2.55
COL9A3-210ENST00000472880 CROCC2H7BZ55 1655 aa31■■■□□ 2.55
COL9A3-210ENST00000472880 ABCC3O15438 1527 aa31■■■□□ 2.55
COL9A3-210ENST00000472880 DUOX2Q9NRD8 1548 aa30.99■■■□□ 2.55
COL9A3-210ENST00000472880 POLR1AO95602 1720 aaPredicted RBP30.99■■■□□ 2.55
COL9A3-210ENST00000472880 ZNF335Q9H4Z2 1342 aaPredicted RBP30.98■■■□□ 2.55
COL9A3-210ENST00000472880 NLRP1Q9C000 1473 aa30.98■■■□□ 2.55
COL9A3-210ENST00000472880 SHANK2Q9UPX8 1470 aa30.98■■■□□ 2.55
COL9A3-210ENST00000472880 MROH1Q8NDA8 1641 aa30.96■■■□□ 2.55
COL9A3-210ENST00000472880 KIF15Q9NS87 1388 aa30.92■■■□□ 2.54
COL9A3-210ENST00000472880 UGGT1Q9NYU2 1555 aa30.92■■■□□ 2.54
COL9A3-210ENST00000472880 ABCC5O15440 1437 aa30.92■■■□□ 2.54
COL9A3-210ENST00000472880 CEP152O94986 1710 aa30.92■■■□□ 2.54
COL9A3-210ENST00000472880 NEURL4Q96JN8 1562 aa30.92■■■□□ 2.54
COL9A3-210ENST00000472880 FGD6Q6ZV73 1430 aa30.91■■■□□ 2.54
COL9A3-210ENST00000472880 SPATA31D1Q6ZQQ2 1576 aa30.91■■■□□ 2.54
COL9A3-210ENST00000472880 DAPK1P53355 1430 aa30.89■■■□□ 2.53
COL9A3-210ENST00000472880 ERBINQ96RT1 1412 aa30.89■■■□□ 2.53
COL9A3-210ENST00000472880 THEMISQ8N1K5 641 aaPredicted RBP30.88■■■□□ 2.53
COL9A3-210ENST00000472880 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.88■■■□□ 2.53
COL9A3-210ENST00000472880 ERVK-7P63135 1459 aa30.88■■■□□ 2.53
COL9A3-210ENST00000472880 PRDM15P57071 1507 aaPredicted RBP30.87■■■□□ 2.53
COL9A3-210ENST00000472880 ANKLE2Q86XL3 938 aa30.84■■■□□ 2.53
COL9A3-210ENST00000472880 RRP7BPQ9NSQ0 103 aa30.83■■■□□ 2.53
COL9A3-210ENST00000472880 DEPDC5O75140 1603 aa30.82■■■□□ 2.52
COL9A3-210ENST00000472880 CPS1P31327 1500 aa30.78■■■□□ 2.52
COL9A3-210ENST00000472880 UBAP1LF5GYI3 381 aa30.77■■■□□ 2.52
COL9A3-210ENST00000472880 NPHP4O75161 1426 aaPredicted RBP30.77■■■□□ 2.52
COL9A3-210ENST00000472880 ANKRD30AQ9BXX3 1397 aa30.77■■■□□ 2.52
COL9A3-210ENST00000472880 MED14O60244 1454 aa30.76■■■□□ 2.52
COL9A3-210ENST00000472880 ARHGAP31Q2M1Z3 1444 aa30.75■■■□□ 2.51
COL9A3-210ENST00000472880 IQGAP1P46940 1657 aa30.74■■■□□ 2.51
COL9A3-210ENST00000472880 KANK1Q14678 1352 aa30.74■■■□□ 2.51
COL9A3-210ENST00000472880 CFAP65Q6ZU64 1925 aaKnown RBP30.74■■■□□ 2.51
COL9A3-210ENST00000472880 UBR1Q8IWV7 1749 aa30.73■■■□□ 2.51
COL9A3-210ENST00000472880 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.73■■■□□ 2.512e-6■□□□□ 8.7
COL9A3-210ENST00000472880 CHIC2Q9UKJ5 165 aa30.73■■■□□ 2.51
COL9A3-210ENST00000472880 VWDEQ8N2E2 1590 aa30.71■■■□□ 2.51
COL9A3-210ENST00000472880 DISP3Q9P2K9 1392 aa30.69■■■□□ 2.5
COL9A3-210ENST00000472880 ADGRL2O95490 1459 aa30.67■■■□□ 2.5
COL9A3-210ENST00000472880 LMTK2Q8IWU2 1503 aa30.65■■■□□ 2.5
COL9A3-210ENST00000472880 FAM50AQ14320 339 aaKnown RBP30.65■■■□□ 2.5
COL9A3-210ENST00000472880 SCAF11Q99590 1463 aaKnown RBP30.63■■■□□ 2.49
COL9A3-210ENST00000472880 SLIT1O75093 1534 aa30.61■■■□□ 2.49
COL9A3-210ENST00000472880 PIK3C2BO00750 1634 aa30.61■■■□□ 2.49
COL9A3-210ENST00000472880 ARHGAP23Q9P227 1491 aa30.6■■■□□ 2.49
COL9A3-210ENST00000472880 EFCAB6Q5THR3 1501 aa30.58■■■□□ 2.49
COL9A3-210ENST00000472880 SCAF1Q9H7N4 1312 aaKnown RBP30.57■■■□□ 2.48
COL9A3-210ENST00000472880 TOM1O60784 492 aa30.56■■■□□ 2.48
COL9A3-210ENST00000472880 SYNMO15061 1565 aa30.56■■■□□ 2.48
COL9A3-210ENST00000472880 KDM5AP29375 1690 aaKnown RBP30.54■■■□□ 2.48
COL9A3-210ENST00000472880 ANKRD50Q9ULJ7 1429 aa30.54■■■□□ 2.48
COL9A3-210ENST00000472880 STRCP1A6NGW2 1772 aa30.54■■■□□ 2.48
COL9A3-210ENST00000472880 TXNDC2Q86VQ3 553 aa30.53■■■□□ 2.48
COL9A3-210ENST00000472880 STAG3Q9UJ98 1225 aa30.53■■■□□ 2.48
COL9A3-210ENST00000472880 PIP4K2BP78356 416 aa30.52■■■□□ 2.48
COL9A3-210ENST00000472880 EID1Q9Y6B2 187 aa30.52■■■□□ 2.48
COL9A3-210ENST00000472880 LTKP29376 864 aa30.51■■■□□ 2.47
COL9A3-210ENST00000472880 TMEM2Q9UHN6 1383 aa30.5■■■□□ 2.47
COL9A3-210ENST00000472880 LRRC7Q96NW7 1537 aa30.49■■■□□ 2.47
COL9A3-210ENST00000472880 NOS1P29475 1434 aa30.48■■■□□ 2.47
COL9A3-210ENST00000472880 ADGRB3O60242 1522 aa30.46■■■□□ 2.47
COL9A3-210ENST00000472880 RPRD2Q5VT52 1461 aaKnown RBP30.45■■■□□ 2.47
COL9A3-210ENST00000472880 IDI1Q13907 227 aa30.45■■■□□ 2.47
COL9A3-210ENST00000472880 ILDR2Q71H61 639 aa30.44■■■□□ 2.46
COL9A3-210ENST00000472880 TET3O43151 1660 aa30.43■■■□□ 2.46
COL9A3-210ENST00000472880 ALKQ9UM73 1620 aa30.43■■■□□ 2.46
COL9A3-210ENST00000472880 UNC13BO14795 1591 aa30.42■■■□□ 2.46
COL9A3-210ENST00000472880 HSPA1LP34931 641 aa30.42■■■□□ 2.46
COL9A3-210ENST00000472880 GCC2Q8IWJ2 1684 aa30.39■■■□□ 2.45
COL9A3-210ENST00000472880 SLC52A1Q9NWF4 448 aa30.38■■■□□ 2.45
COL9A3-210ENST00000472880 ROCK1Q13464 1354 aa30.38■■■□□ 2.45
COL9A3-210ENST00000472880 XIRP1Q702N8 1843 aaKnown RBP30.3■■■□□ 2.44
COL9A3-210ENST00000472880 IQGAP3Q86VI3 1631 aa30.29■■■□□ 2.44
COL9A3-210ENST00000472880 MED1Q15648 1581 aaPredicted RBP30.29■■■□□ 2.44
COL9A3-210ENST00000472880 E9PCH4 1651 aa30.28■■■□□ 2.44
COL9A3-210ENST00000472880 SOCS7O14512 581 aa30.27■■■□□ 2.44
COL9A3-210ENST00000472880 ITGAEP38570 1179 aa30.27■■■□□ 2.44
COL9A3-210ENST00000472880 MYO5BQ9ULV0 1848 aa30.26■■■□□ 2.44
COL9A3-210ENST00000472880 PPARGC1BQ86YN6 1023 aaKnown RBP30.26■■■□□ 2.43
COL9A3-210ENST00000472880 SLC26A8Q96RN1 970 aa30.26■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms