RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 SETD1BQ9UPS6 1966 aaKnown RBP18.5■□□□□ 0.55
SYNE1-221ENST00000472563 KDM5DQ9BY66 1539 aa18.49■□□□□ 0.55
SYNE1-221ENST00000472563 DUOX2Q9NRD8 1548 aa18.49■□□□□ 0.55
SYNE1-221ENST00000472563 CLTCQ00610 1675 aaKnown RBP18.48■□□□□ 0.55
SYNE1-221ENST00000472563 FAM50AQ14320 339 aaKnown RBP18.48■□□□□ 0.55
SYNE1-221ENST00000472563 FBXO31Q5XUX0 539 aaPredicted RBP18.48■□□□□ 0.55
SYNE1-221ENST00000472563 ANKRD30AQ9BXX3 1397 aa18.47■□□□□ 0.55
SYNE1-221ENST00000472563 ILDR1Q86SU0 546 aaPredicted RBP18.47■□□□□ 0.55
SYNE1-221ENST00000472563 CHIC2Q9UKJ5 165 aa18.47■□□□□ 0.55
SYNE1-221ENST00000472563 PZPP20742 1482 aa18.46■□□□□ 0.54
SYNE1-221ENST00000472563 ERBINQ96RT1 1412 aa18.45■□□□□ 0.54
SYNE1-221ENST00000472563 DNMT1P26358 1616 aaKnown RBP18.45■□□□□ 0.54
SYNE1-221ENST00000472563 TNRQ92752 1358 aa18.44■□□□□ 0.54
SYNE1-221ENST00000472563 NCOA1Q15788 1441 aa18.44■□□□□ 0.54
SYNE1-221ENST00000472563 EIF2AK4Q9P2K8 1649 aaKnown RBP18.42■□□□□ 0.54
SYNE1-221ENST00000472563 PTPRTO14522 1441 aa18.42■□□□□ 0.54
SYNE1-221ENST00000472563 RNF17Q9BXT8 1623 aaKnown RBP18.41■□□□□ 0.54
SYNE1-221ENST00000472563 ABCC3O15438 1527 aa18.41■□□□□ 0.54
SYNE1-221ENST00000472563 A2ML1A8K2U0 1454 aa18.39■□□□□ 0.54
SYNE1-221ENST00000472563 ADGRL2O95490 1459 aa18.39■□□□□ 0.54
SYNE1-221ENST00000472563 PKD2Q13563 968 aa18.39■□□□□ 0.53
SYNE1-221ENST00000472563 PPARGC1BQ86YN6 1023 aaKnown RBP18.39■□□□□ 0.53
SYNE1-221ENST00000472563 FBXO41Q8TF61 875 aa18.39■□□□□ 0.53
SYNE1-221ENST00000472563 PLA2R1Q13018 1463 aa18.38■□□□□ 0.53
SYNE1-221ENST00000472563 CEP170BQ9Y4F5 1589 aaPredicted RBP18.38■□□□□ 0.53
SYNE1-221ENST00000472563 MROH1Q8NDA8 1641 aa18.38■□□□□ 0.53
SYNE1-221ENST00000472563 CROCC2H7BZ55 1655 aa18.38■□□□□ 0.53
SYNE1-221ENST00000472563 CERKQ8TCT0 537 aa18.37■□□□□ 0.53
SYNE1-221ENST00000472563 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.37■□□□□ 0.53
SYNE1-221ENST00000472563 NCKAP5LQ9HCH0 1330 aa18.37■□□□□ 0.53
SYNE1-221ENST00000472563 CAMSAP1Q5T5Y3 1602 aa18.37■□□□□ 0.53
SYNE1-221ENST00000472563 KANK1Q14678 1352 aa18.36■□□□□ 0.53
SYNE1-221ENST00000472563 MYO3AQ8NEV4 1616 aa18.36■□□□□ 0.53
SYNE1-221ENST00000472563 STRCQ7RTU9 1775 aa18.35■□□□□ 0.53
SYNE1-221ENST00000472563 NLRP1Q9C000 1473 aa18.35■□□□□ 0.53
SYNE1-221ENST00000472563 ARHGAP31Q2M1Z3 1444 aa18.35■□□□□ 0.53
SYNE1-221ENST00000472563 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.35■□□□□ 0.53
SYNE1-221ENST00000472563 PRDM15P57071 1507 aaPredicted RBP18.34■□□□□ 0.53
SYNE1-221ENST00000472563 THEMISQ8N1K5 641 aaPredicted RBP18.34■□□□□ 0.53
SYNE1-221ENST00000472563 ANKRD50Q9ULJ7 1429 aa18.33■□□□□ 0.53
SYNE1-221ENST00000472563 ERVK-7P63135 1459 aa18.33■□□□□ 0.52
SYNE1-221ENST00000472563 ZNF142P52746 1687 aaPredicted RBP18.32■□□□□ 0.52
SYNE1-221ENST00000472563 ZC3H13Q5T200 1668 aaKnown RBP18.31■□□□□ 0.52
SYNE1-221ENST00000472563 ROCK1Q13464 1354 aa18.31■□□□□ 0.52
SYNE1-221ENST00000472563 SPATA31D1Q6ZQQ2 1576 aa18.3■□□□□ 0.52
SYNE1-221ENST00000472563 LMTK2Q8IWU2 1503 aa18.28■□□□□ 0.52
SYNE1-221ENST00000472563 ANKLE2Q86XL3 938 aa18.28■□□□□ 0.52
SYNE1-221ENST00000472563 DEPDC5O75140 1603 aa18.27■□□□□ 0.52
SYNE1-221ENST00000472563 VWDEQ8N2E2 1590 aa18.27■□□□□ 0.52
SYNE1-221ENST00000472563 ITGAEP38570 1179 aa18.27■□□□□ 0.52
SYNE1-221ENST00000472563 UGGT1Q9NYU2 1555 aa18.25■□□□□ 0.51
SYNE1-221ENST00000472563 RRBP1Q9P2E9 1410 aaKnown RBP18.23■□□□□ 0.51
SYNE1-221ENST00000472563 ZNF335Q9H4Z2 1342 aaPredicted RBP18.23■□□□□ 0.51
SYNE1-221ENST00000472563 LTBP4Q8N2S1 1624 aa18.21■□□□□ 0.51
SYNE1-221ENST00000472563 CEP152O94986 1710 aa18.2■□□□□ 0.5
SYNE1-221ENST00000472563 IDI1Q13907 227 aa18.2■□□□□ 0.5
SYNE1-221ENST00000472563 NOS1P29475 1434 aa18.2■□□□□ 0.5
SYNE1-221ENST00000472563 MED14O60244 1454 aa18.19■□□□□ 0.5
SYNE1-221ENST00000472563 NPHP4O75161 1426 aaPredicted RBP18.18■□□□□ 0.5
SYNE1-221ENST00000472563 SLC52A1Q9NWF4 448 aa18.18■□□□□ 0.5
SYNE1-221ENST00000472563 EFCAB6Q5THR3 1501 aa18.18■□□□□ 0.5
SYNE1-221ENST00000472563 RPRD2Q5VT52 1461 aaKnown RBP18.17■□□□□ 0.5
SYNE1-221ENST00000472563 NEURL4Q96JN8 1562 aa18.17■□□□□ 0.5
SYNE1-221ENST00000472563 STAG3Q9UJ98 1225 aa18.16■□□□□ 0.5
SYNE1-221ENST00000472563 NUP155O75694 1391 aa18.16■□□□□ 0.5
SYNE1-221ENST00000472563 IQSEC2Q5JU85 1478 aa18.15■□□□□ 0.5
SYNE1-221ENST00000472563 TXNDC2Q86VQ3 553 aa18.15■□□□□ 0.5
SYNE1-221ENST00000472563 ARHGAP23Q9P227 1491 aa18.14■□□□□ 0.5
SYNE1-221ENST00000472563 LTKP29376 864 aa18.14■□□□□ 0.49
SYNE1-221ENST00000472563 EID1Q9Y6B2 187 aa18.14■□□□□ 0.49
SYNE1-221ENST00000472563 TMEM2Q9UHN6 1383 aa18.14■□□□□ 0.49
SYNE1-221ENST00000472563 SLIT1O75093 1534 aa18.13■□□□□ 0.49
SYNE1-221ENST00000472563 SCAF11Q99590 1463 aaKnown RBP18.12■□□□□ 0.49
SYNE1-221ENST00000472563 UNC13BO14795 1591 aa18.12■□□□□ 0.49
SYNE1-221ENST00000472563 SYNMO15061 1565 aa18.1■□□□□ 0.49
SYNE1-221ENST00000472563 UBR1Q8IWV7 1749 aa18.09■□□□□ 0.49
SYNE1-221ENST00000472563 NAIPQ13075 1403 aa18.08■□□□□ 0.49
SYNE1-221ENST00000472563 TET3O43151 1660 aa18.08■□□□□ 0.48
SYNE1-221ENST00000472563 POLR1AO95602 1720 aaPredicted RBP18.06■□□□□ 0.48
SYNE1-221ENST00000472563 PIK3C2BO00750 1634 aa18.06■□□□□ 0.48
SYNE1-221ENST00000472563 CPS1P31327 1500 aa18.06■□□□□ 0.48
SYNE1-221ENST00000472563 HFM1A2PYH4 1435 aa18.06■□□□□ 0.48
SYNE1-221ENST00000472563 IQGAP3Q86VI3 1631 aa18.05■□□□□ 0.48
SYNE1-221ENST00000472563 UBAP1LF5GYI3 381 aa18.04■□□□□ 0.48
SYNE1-221ENST00000472563 ADGRB3O60242 1522 aa18.03■□□□□ 0.48
SYNE1-221ENST00000472563 HDGFP51858 240 aaKnown RBP18.03■□□□□ 0.48
SYNE1-221ENST00000472563 KDM5AP29375 1690 aaKnown RBP18.03■□□□□ 0.48
SYNE1-221ENST00000472563 CFAP65Q6ZU64 1925 aaKnown RBP18.02■□□□□ 0.48
SYNE1-221ENST00000472563 IQGAP1P46940 1657 aa18.02■□□□□ 0.47
SYNE1-221ENST00000472563 CHGAP10645 457 aaKnown RBP18■□□□□ 0.47
SYNE1-221ENST00000472563 GCC2Q8IWJ2 1684 aa17.99■□□□□ 0.47
SYNE1-221ENST00000472563 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.99■□□□□ 0.47
SYNE1-221ENST00000472563 ZFYVE9O95405 1425 aa17.98■□□□□ 0.47
SYNE1-221ENST00000472563 RIMS2Q9UQ26 1411 aa17.98■□□□□ 0.47
SYNE1-221ENST00000472563 TOM1O60784 492 aa17.98■□□□□ 0.47
SYNE1-221ENST00000472563 TRIM52Q96A61 297 aa17.98■□□□□ 0.47
SYNE1-221ENST00000472563 SLC26A8Q96RN1 970 aa17.98■□□□□ 0.47
SYNE1-221ENST00000472563 E9PCH4 1651 aa17.97■□□□□ 0.47
SYNE1-221ENST00000472563 PPP1R15AO75807 674 aaPredicted RBP17.97■□□□□ 0.47
SYNE1-221ENST00000472563 PLEKHG1Q9ULL1 1385 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms