RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PLA2R1Q13018 1463 aa24.68■■□□□ 1.54
CCDC88B-205ENST00000472524 MIA2Q96PC5 1412 aa24.68■■□□□ 1.54
CCDC88B-205ENST00000472524 ZNF142P52746 1687 aaPredicted RBP24.67■■□□□ 1.54
CCDC88B-205ENST00000472524 TSPY4P0CV99 314 aa24.67■■□□□ 1.54
CCDC88B-205ENST00000472524 TSPY10P0CW01 314 aa24.67■■□□□ 1.54
CCDC88B-205ENST00000472524 PKD2Q13563 968 aa24.67■■□□□ 1.54
CCDC88B-205ENST00000472524 TCOF1Q13428 1488 aaKnown RBP24.66■■□□□ 1.54
CCDC88B-205ENST00000472524 MAST1Q9Y2H9 1570 aa24.66■■□□□ 1.54
CCDC88B-205ENST00000472524 FBXO31Q5XUX0 539 aaPredicted RBP24.65■■□□□ 1.54
CCDC88B-205ENST00000472524 IQSEC2Q5JU85 1478 aa24.64■■□□□ 1.53
CCDC88B-205ENST00000472524 A2ML1A8K2U0 1454 aa24.63■■□□□ 1.53
CCDC88B-205ENST00000472524 PTPN23Q9H3S7 1636 aa24.62■■□□□ 1.53
CCDC88B-205ENST00000472524 WASHC2CQ9Y4E1 1318 aa24.61■■□□□ 1.53
CCDC88B-205ENST00000472524 CROCC2H7BZ55 1655 aa24.6■■□□□ 1.53
CCDC88B-205ENST00000472524 TNRQ92752 1358 aa24.6■■□□□ 1.53
CCDC88B-205ENST00000472524 DISP3Q9P2K9 1392 aa24.6■■□□□ 1.53
CCDC88B-205ENST00000472524 KDM5DQ9BY66 1539 aa24.6■■□□□ 1.53
CCDC88B-205ENST00000472524 PZPP20742 1482 aa24.58■■□□□ 1.53
CCDC88B-205ENST00000472524 DNMT1P26358 1616 aaKnown RBP24.57■■□□□ 1.52
CCDC88B-205ENST00000472524 FAM135AQ9P2D6 1515 aa24.55■■□□□ 1.52
CCDC88B-205ENST00000472524 RNF17Q9BXT8 1623 aaKnown RBP24.54■■□□□ 1.52
CCDC88B-205ENST00000472524 ILDR2Q71H61 639 aa24.54■■□□□ 1.52
CCDC88B-205ENST00000472524 EIF2AK4Q9P2K8 1649 aaKnown RBP24.53■■□□□ 1.52
CCDC88B-205ENST00000472524 FGD6Q6ZV73 1430 aa24.53■■□□□ 1.52
CCDC88B-205ENST00000472524 UBAP1LF5GYI3 381 aa24.53■■□□□ 1.52
CCDC88B-205ENST00000472524 ABCC5O15440 1437 aa24.5■■□□□ 1.51
CCDC88B-205ENST00000472524 SHANK2Q9UPX8 1470 aa24.5■■□□□ 1.51
CCDC88B-205ENST00000472524 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.49■■□□□ 1.518e-7■■■■■ 43.9
CCDC88B-205ENST00000472524 DUOX2Q9NRD8 1548 aa24.49■■□□□ 1.51
CCDC88B-205ENST00000472524 CEP152O94986 1710 aa24.48■■□□□ 1.51
CCDC88B-205ENST00000472524 ZC3H13Q5T200 1668 aaKnown RBP24.48■■□□□ 1.51
CCDC88B-205ENST00000472524 CFAP65Q6ZU64 1925 aaKnown RBP24.47■■□□□ 1.51
CCDC88B-205ENST00000472524 NEURL4Q96JN8 1562 aa24.47■■□□□ 1.51
CCDC88B-205ENST00000472524 DAPK1P53355 1430 aa24.47■■□□□ 1.51
CCDC88B-205ENST00000472524 MROH1Q8NDA8 1641 aa24.46■■□□□ 1.51
CCDC88B-205ENST00000472524 NLRP1Q9C000 1473 aa24.45■■□□□ 1.51
CCDC88B-205ENST00000472524 KIF15Q9NS87 1388 aa24.45■■□□□ 1.5
CCDC88B-205ENST00000472524 ANKLE2Q86XL3 938 aa24.45■■□□□ 1.5
CCDC88B-205ENST00000472524 ABCC3O15438 1527 aa24.45■■□□□ 1.5
CCDC88B-205ENST00000472524 THEMISQ8N1K5 641 aaPredicted RBP24.44■■□□□ 1.5
CCDC88B-205ENST00000472524 SPATA31D1Q6ZQQ2 1576 aa24.43■■□□□ 1.5
CCDC88B-205ENST00000472524 UGGT1Q9NYU2 1555 aa24.42■■□□□ 1.5
CCDC88B-205ENST00000472524 RRP7BPQ9NSQ0 103 aa24.42■■□□□ 1.5
CCDC88B-205ENST00000472524 POLR1AO95602 1720 aaPredicted RBP24.38■■□□□ 1.49
CCDC88B-205ENST00000472524 NPHP4O75161 1426 aaPredicted RBP24.38■■□□□ 1.49
CCDC88B-205ENST00000472524 ERBINQ96RT1 1412 aa24.38■■□□□ 1.49
CCDC88B-205ENST00000472524 CHIC2Q9UKJ5 165 aa24.38■■□□□ 1.49
CCDC88B-205ENST00000472524 ERVK-7P63135 1459 aa24.37■■□□□ 1.49
CCDC88B-205ENST00000472524 CPS1P31327 1500 aa24.36■■□□□ 1.49
CCDC88B-205ENST00000472524 PRDM15P57071 1507 aaPredicted RBP24.36■■□□□ 1.49
CCDC88B-205ENST00000472524 FAM50AQ14320 339 aaKnown RBP24.36■■□□□ 1.49
CCDC88B-205ENST00000472524 MED14O60244 1454 aa24.36■■□□□ 1.49
CCDC88B-205ENST00000472524 SOCS7O14512 581 aa24.35■■□□□ 1.49
CCDC88B-205ENST00000472524 DEPDC5O75140 1603 aa24.35■■□□□ 1.49
CCDC88B-205ENST00000472524 VWDEQ8N2E2 1590 aa24.34■■□□□ 1.49
CCDC88B-205ENST00000472524 ANKRD30AQ9BXX3 1397 aa24.34■■□□□ 1.49
CCDC88B-205ENST00000472524 PIP4K2BP78356 416 aa24.34■■□□□ 1.49
CCDC88B-205ENST00000472524 SCAF1Q9H7N4 1312 aaKnown RBP24.34■■□□□ 1.49
CCDC88B-205ENST00000472524 TOM1O60784 492 aa24.3■■□□□ 1.48
CCDC88B-205ENST00000472524 HSPA1LP34931 641 aa24.3■■□□□ 1.48
CCDC88B-205ENST00000472524 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.3■■□□□ 1.48
CCDC88B-205ENST00000472524 ADGRL2O95490 1459 aa24.29■■□□□ 1.48
CCDC88B-205ENST00000472524 KANK1Q14678 1352 aa24.25■■□□□ 1.47
CCDC88B-205ENST00000472524 IQGAP1P46940 1657 aa24.24■■□□□ 1.47
CCDC88B-205ENST00000472524 PPARGC1BQ86YN6 1023 aaKnown RBP24.24■■□□□ 1.47
CCDC88B-205ENST00000472524 ARHGAP31Q2M1Z3 1444 aa24.24■■□□□ 1.47
CCDC88B-205ENST00000472524 UBR1Q8IWV7 1749 aa24.22■■□□□ 1.47
CCDC88B-205ENST00000472524 LTKP29376 864 aa24.22■■□□□ 1.47
CCDC88B-205ENST00000472524 SCAF11Q99590 1463 aaKnown RBP24.21■■□□□ 1.47
CCDC88B-205ENST00000472524 ALKQ9UM73 1620 aa24.21■■□□□ 1.47
CCDC88B-205ENST00000472524 LRRC7Q96NW7 1537 aa24.2■■□□□ 1.46
CCDC88B-205ENST00000472524 TXNDC2Q86VQ3 553 aa24.19■■□□□ 1.46
CCDC88B-205ENST00000472524 LMTK2Q8IWU2 1503 aa24.19■■□□□ 1.46
CCDC88B-205ENST00000472524 ARHGAP23Q9P227 1491 aa24.18■■□□□ 1.46
CCDC88B-205ENST00000472524 ANKRD50Q9ULJ7 1429 aa24.18■■□□□ 1.46
CCDC88B-205ENST00000472524 SLIT1O75093 1534 aa24.16■■□□□ 1.46
CCDC88B-205ENST00000472524 STRCP1A6NGW2 1772 aa24.16■■□□□ 1.46
CCDC88B-205ENST00000472524 PIK3C2BO00750 1634 aa24.15■■□□□ 1.46
CCDC88B-205ENST00000472524 EFCAB6Q5THR3 1501 aa24.15■■□□□ 1.46
CCDC88B-205ENST00000472524 SENP3Q9H4L4 574 aaPredicted RBP24.12■■□□□ 1.45
CCDC88B-205ENST00000472524 EID1Q9Y6B2 187 aa24.12■■□□□ 1.45
CCDC88B-205ENST00000472524 TMEM2Q9UHN6 1383 aa24.12■■□□□ 1.45
CCDC88B-205ENST00000472524 MED1Q15648 1581 aaPredicted RBP24.12■■□□□ 1.45
CCDC88B-205ENST00000472524 ITGAEP38570 1179 aa24.11■■□□□ 1.45
CCDC88B-205ENST00000472524 STAG3Q9UJ98 1225 aa24.11■■□□□ 1.45
CCDC88B-205ENST00000472524 IDI1Q13907 227 aa24.1■■□□□ 1.45
CCDC88B-205ENST00000472524 SYNMO15061 1565 aa24.1■■□□□ 1.45
CCDC88B-205ENST00000472524 UNC13BO14795 1591 aa24.09■■□□□ 1.45
CCDC88B-205ENST00000472524 TET3O43151 1660 aa24.08■■□□□ 1.45
CCDC88B-205ENST00000472524 GCC2Q8IWJ2 1684 aa24.08■■□□□ 1.45
CCDC88B-205ENST00000472524 ROCK1Q13464 1354 aa24.07■■□□□ 1.44
CCDC88B-205ENST00000472524 KDM5AP29375 1690 aaKnown RBP24.05■■□□□ 1.44
CCDC88B-205ENST00000472524 NOS1P29475 1434 aa24.04■■□□□ 1.44
CCDC88B-205ENST00000472524 MYO5BQ9ULV0 1848 aa24.03■■□□□ 1.44
CCDC88B-205ENST00000472524 RPRD2Q5VT52 1461 aaKnown RBP24.01■■□□□ 1.43
CCDC88B-205ENST00000472524 ADGRB3O60242 1522 aa24■■□□□ 1.43
CCDC88B-205ENST00000472524 IQGAP3Q86VI3 1631 aa24■■□□□ 1.43
CCDC88B-205ENST00000472524 E9PCH4 1651 aa24■■□□□ 1.43
CCDC88B-205ENST00000472524 SLC26A8Q96RN1 970 aa24■■□□□ 1.43
CCDC88B-205ENST00000472524 PHF23Q9BUL5 403 aaPredicted RBP23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms