RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 CCP110O43303 1012 aa16.35■□□□□ 0.21
COL6A3-209ENST00000472056 CENPJQ9HC77 1338 aaPredicted RBP16.35■□□□□ 0.21
COL6A3-209ENST00000472056 ARID3AQ99856 593 aa16.35■□□□□ 0.21
COL6A3-209ENST00000472056 HDGFL2Q7Z4V5 671 aaPredicted RBP16.34■□□□□ 0.21
COL6A3-209ENST00000472056 ERCC4Q92889 916 aaPredicted RBP16.34■□□□□ 0.21
COL6A3-209ENST00000472056 STK31Q9BXU1 1019 aa16.34■□□□□ 0.21
COL6A3-209ENST00000472056 ANO8Q9HCE9 1232 aaPredicted RBP16.34■□□□□ 0.21
COL6A3-209ENST00000472056 DDX49Q9Y6V7 483 aaKnown RBP16.34■□□□□ 0.21
COL6A3-209ENST00000472056 UACAQ9BZF9 1416 aa16.33■□□□□ 0.21
COL6A3-209ENST00000472056 NUCB2P80303 420 aa16.33■□□□□ 0.21
COL6A3-209ENST00000472056 MYO6Q9UM54 1294 aa16.33■□□□□ 0.2
COL6A3-209ENST00000472056 LETM1O95202 739 aaPredicted RBP16.32■□□□□ 0.2
COL6A3-209ENST00000472056 SPRYD3Q8NCJ5 442 aa16.32■□□□□ 0.2
COL6A3-209ENST00000472056 CAVIN1Q6NZI2 390 aaKnown RBP16.32■□□□□ 0.2
COL6A3-209ENST00000472056 CCDC191Q8NCU4 936 aa16.32■□□□□ 0.2
COL6A3-209ENST00000472056 NAT10Q9H0A0 1025 aaKnown RBP16.32■□□□□ 0.2
COL6A3-209ENST00000472056 SMARCA2P51531 1590 aa16.32■□□□□ 0.2
COL6A3-209ENST00000472056 RUFY1Q96T51 708 aa16.31■□□□□ 0.2
COL6A3-209ENST00000472056 SF3A1Q15459 793 aaKnown RBP16.31■□□□□ 0.2
COL6A3-209ENST00000472056 DCAF11Q8TEB1 546 aa16.31■□□□□ 0.2
COL6A3-209ENST00000472056 CCDC18Q5T9S5 1454 aa16.3■□□□□ 0.2
COL6A3-209ENST00000472056 TPD52L1Q16890 204 aaPredicted RBP16.3■□□□□ 0.2
COL6A3-209ENST00000472056 HSP90B1P14625 803 aaKnown RBP16.3■□□□□ 0.2
COL6A3-209ENST00000472056 MFAP1P55081 439 aaKnown RBP16.3■□□□□ 0.2
COL6A3-209ENST00000472056 CCDC39Q9UFE4 941 aa16.29■□□□□ 0.2
COL6A3-209ENST00000472056 TAOK2Q9UL54 1235 aa16.29■□□□□ 0.2
COL6A3-209ENST00000472056 H3BQV1 296 aa16.29■□□□□ 0.2
COL6A3-209ENST00000472056 IFFO2Q5TF58 517 aa16.29■□□□□ 0.2
COL6A3-209ENST00000472056 RUFY2Q8WXA3 655 aa16.28■□□□□ 0.2
COL6A3-209ENST00000472056 SMC4Q9NTJ3 1288 aa16.28■□□□□ 0.2
COL6A3-209ENST00000472056 TRIM6-TRIM34B2RNG4 842 aa16.28■□□□□ 0.2
COL6A3-209ENST00000472056 RDXP35241 583 aaKnown RBP16.28■□□□□ 0.2
COL6A3-209ENST00000472056 CPLX2Q6PUV4 134 aaKnown RBP16.28■□□□□ 0.2
COL6A3-209ENST00000472056 WWC1Q8IX03 1113 aa16.28■□□□□ 0.2
COL6A3-209ENST00000472056 MRE11P49959 708 aa16.28■□□□□ 0.2
COL6A3-209ENST00000472056 KIF7Q2M1P5 1343 aa16.27■□□□□ 0.2
COL6A3-209ENST00000472056 CHMP5Q9NZZ3 219 aa16.27■□□□□ 0.2
COL6A3-209ENST00000472056 MYBBP1AQ9BQG0 1328 aaKnown RBP16.27■□□□□ 0.19
COL6A3-209ENST00000472056 RASSF8Q8NHQ8 419 aa16.27■□□□□ 0.19
COL6A3-209ENST00000472056 CAGE1Q8TC20 777 aa16.27■□□□□ 0.19
COL6A3-209ENST00000472056 USP8P40818 1118 aa16.26■□□□□ 0.19
COL6A3-209ENST00000472056 ANKRD30AQ9BXX3 1397 aa16.26■□□□□ 0.19
COL6A3-209ENST00000472056 TERF2IPQ9NYB0 399 aa16.26■□□□□ 0.19
COL6A3-209ENST00000472056 CCDC47Q96A33 483 aaKnown RBP16.25■□□□□ 0.19
COL6A3-209ENST00000472056 RSPH4AQ5TD94 716 aa16.25■□□□□ 0.19
COL6A3-209ENST00000472056 RAB3GAP2Q9H2M9 1393 aa16.24■□□□□ 0.19
COL6A3-209ENST00000472056 E9PSI1 815 aa16.24■□□□□ 0.19
COL6A3-209ENST00000472056 PDE4AP27815 886 aa16.24■□□□□ 0.19
COL6A3-209ENST00000472056 HSPA5P11021 654 aaKnown RBP16.24■□□□□ 0.19
COL6A3-209ENST00000472056 PDIA4P13667 645 aaKnown RBP16.23■□□□□ 0.19
COL6A3-209ENST00000472056 RRP9O43818 475 aaKnown RBP16.23■□□□□ 0.19
COL6A3-209ENST00000472056 CUX1P39880 1505 aa16.23■□□□□ 0.19
COL6A3-209ENST00000472056 SRPK2P78362 688 aaKnown RBP16.23■□□□□ 0.19
COL6A3-209ENST00000472056 ZBTB7CA1YPR0 619 aa16.22■□□□□ 0.19
COL6A3-209ENST00000472056 TSPYL1Q9H0U9 437 aa16.22■□□□□ 0.19
COL6A3-209ENST00000472056 FAM184AQ8NB25 1140 aa16.22■□□□□ 0.19
COL6A3-209ENST00000472056 GORABQ5T7V8 394 aa16.21■□□□□ 0.19
COL6A3-209ENST00000472056 RNF20Q5VTR2 975 aa16.21■□□□□ 0.19
COL6A3-209ENST00000472056 MBD3O95983 291 aa16.21■□□□□ 0.19
COL6A3-209ENST00000472056 ZKSCAN1P17029 563 aaPredicted RBP16.21■□□□□ 0.19
COL6A3-209ENST00000472056 CCDC173Q0VFZ6 552 aa16.21■□□□□ 0.19
COL6A3-209ENST00000472056 SIN3AQ96ST3 1273 aa16.2■□□□□ 0.18
COL6A3-209ENST00000472056 CARMIL2Q6F5E8 1435 aa16.2■□□□□ 0.18
COL6A3-209ENST00000472056 HOMER1Q86YM7 354 aa16.2■□□□□ 0.18
COL6A3-209ENST00000472056 TMX4Q9H1E5 349 aaPredicted RBP16.2■□□□□ 0.18
COL6A3-209ENST00000472056 U2AF1L5P0DN76 240 aaPredicted RBP16.2■□□□□ 0.18
COL6A3-209ENST00000472056 U2AF1Q01081 240 aaKnown RBP eCLIP16.2■□□□□ 0.18
COL6A3-209ENST00000472056 FAM13BQ9NYF5 915 aa16.19■□□□□ 0.18
COL6A3-209ENST00000472056 MCM2P49736 904 aa16.19■□□□□ 0.18
COL6A3-209ENST00000472056 TXLNBQ8N3L3 684 aa16.19■□□□□ 0.18
COL6A3-209ENST00000472056 DDX19BQ9UMR2 479 aa16.19■□□□□ 0.18
COL6A3-209ENST00000472056 EIF4G1Q04637 1599 aaKnown RBP16.19■□□□□ 0.18
COL6A3-209ENST00000472056 GOLGA6L7A0A1B0GV03 622 aa16.18■□□□□ 0.18
COL6A3-209ENST00000472056 NASPP49321 788 aaPredicted RBP16.18■□□□□ 0.18
COL6A3-209ENST00000472056 LEKR1Q6ZMV7 388 aa16.18■□□□□ 0.18
COL6A3-209ENST00000472056 AKAP17AQ02040 695 aaKnown RBP16.18■□□□□ 0.18
COL6A3-209ENST00000472056 CCAR2Q8N163 923 aaKnown RBP16.18■□□□□ 0.18
COL6A3-209ENST00000472056 MNS1Q8NEH6 495 aa16.18■□□□□ 0.18
COL6A3-209ENST00000472056 NINLQ9Y2I6 1382 aa16.17■□□□□ 0.18
COL6A3-209ENST00000472056 RRP1P56182 461 aaKnown RBP16.17■□□□□ 0.18
COL6A3-209ENST00000472056 ZRSR2Q15696 482 aaKnown RBP16.16■□□□□ 0.18
COL6A3-209ENST00000472056 STK11IPQ8N1F8 1099 aa16.16■□□□□ 0.18
COL6A3-209ENST00000472056 SASS6Q6UVJ0 657 aa16.16■□□□□ 0.18
COL6A3-209ENST00000472056 PDCL2Q8N4E4 241 aa16.16■□□□□ 0.18
COL6A3-209ENST00000472056 INCENPQ9NQS7 918 aa16.16■□□□□ 0.18
COL6A3-209ENST00000472056 H0YHG0 523 aa16.16■□□□□ 0.18
COL6A3-209ENST00000472056 CARMIL1Q5VZK9 1371 aa16.15■□□□□ 0.18
COL6A3-209ENST00000472056 TRIM29Q14134 588 aa16.15■□□□□ 0.18
COL6A3-209ENST00000472056 PDCP20941 246 aa16.15■□□□□ 0.18
COL6A3-209ENST00000472056 SYNE3Q6ZMZ3 975 aa16.14■□□□□ 0.17
COL6A3-209ENST00000472056 ZKSCAN2Q63HK3 967 aa16.14■□□□□ 0.17
COL6A3-209ENST00000472056 SCAPERQ9BY12 1400 aa16.14■□□□□ 0.17
COL6A3-209ENST00000472056 PATL2C9JE40 543 aaKnown RBP16.13■□□□□ 0.17
COL6A3-209ENST00000472056 NEXNQ0ZGT2 675 aa16.12■□□□□ 0.17
COL6A3-209ENST00000472056 PKNOX2Q96KN3 472 aa16.12■□□□□ 0.17
COL6A3-209ENST00000472056 INTS3Q68E01 1043 aaKnown RBP16.12■□□□□ 0.17
COL6A3-209ENST00000472056 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.11■□□□□ 0.17
COL6A3-209ENST00000472056 PES1O00541 588 aaKnown RBP16.11■□□□□ 0.17
COL6A3-209ENST00000472056 STAC3Q96MF2 364 aa16.11■□□□□ 0.17
COL6A3-209ENST00000472056 EIF3JO75822 258 aaKnown RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms