RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 PTPRTO14522 1441 aa12.76□□□□□ -0.37
USP48-207ENST00000471752 CAMSAP1Q5T5Y3 1602 aa12.76□□□□□ -0.37
USP48-207ENST00000471752 ADGBQ8N7X0 1667 aa12.74□□□□□ -0.37
USP48-207ENST00000471752 MYOM3Q5VTT5 1437 aa12.74□□□□□ -0.37
USP48-207ENST00000471752 RRP7BPQ9NSQ0 103 aa12.74□□□□□ -0.37
USP48-207ENST00000471752 CHIC2Q9UKJ5 165 aa12.74□□□□□ -0.37
USP48-207ENST00000471752 LTBP4Q8N2S1 1624 aa12.73□□□□□ -0.37
USP48-207ENST00000471752 TNRQ92752 1358 aa12.72□□□□□ -0.37
USP48-207ENST00000471752 MROH2AA6NES4 1674 aa12.72□□□□□ -0.37
USP48-207ENST00000471752 ARHGEF5Q12774 1597 aa12.72□□□□□ -0.37
USP48-207ENST00000471752 MAP3K1Q13233 1512 aa12.72□□□□□ -0.37
USP48-207ENST00000471752 ABCC5O15440 1437 aa12.71□□□□□ -0.37
USP48-207ENST00000471752 PPARGC1BQ86YN6 1023 aaKnown RBP12.71□□□□□ -0.37
USP48-207ENST00000471752 MIA2Q96PC5 1412 aa12.7□□□□□ -0.38
USP48-207ENST00000471752 MYO3AQ8NEV4 1616 aa12.7□□□□□ -0.38
USP48-207ENST00000471752 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.69□□□□□ -0.38
USP48-207ENST00000471752 CEP170BQ9Y4F5 1589 aaPredicted RBP12.69□□□□□ -0.38
USP48-207ENST00000471752 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.69□□□□□ -0.381e-6■□□□□ 8.5
USP48-207ENST00000471752 TCOF1Q13428 1488 aaKnown RBP12.69□□□□□ -0.38
USP48-207ENST00000471752 A2ML1A8K2U0 1454 aa12.68□□□□□ -0.38
USP48-207ENST00000471752 APLP2Q06481 763 aa12.68□□□□□ -0.38
USP48-207ENST00000471752 PKD2Q13563 968 aa12.68□□□□□ -0.38
USP48-207ENST00000471752 PZPP20742 1482 aa12.67□□□□□ -0.38
USP48-207ENST00000471752 DNMT1P26358 1616 aaKnown RBP12.67□□□□□ -0.38
USP48-207ENST00000471752 ABCC3O15438 1527 aa12.66□□□□□ -0.38
USP48-207ENST00000471752 KDM5DQ9BY66 1539 aa12.66□□□□□ -0.38
USP48-207ENST00000471752 KIF15Q9NS87 1388 aa12.66□□□□□ -0.38
USP48-207ENST00000471752 FGD6Q6ZV73 1430 aa12.65□□□□□ -0.38
USP48-207ENST00000471752 MROH1Q8NDA8 1641 aa12.65□□□□□ -0.38
USP48-207ENST00000471752 PLA2R1Q13018 1463 aa12.65□□□□□ -0.38
USP48-207ENST00000471752 MAST1Q9Y2H9 1570 aa12.64□□□□□ -0.39
USP48-207ENST00000471752 ILDR2Q71H61 639 aa12.64□□□□□ -0.39
USP48-207ENST00000471752 DAPK1P53355 1430 aa12.63□□□□□ -0.39
USP48-207ENST00000471752 UBAP1LF5GYI3 381 aa12.63□□□□□ -0.39
USP48-207ENST00000471752 LTKP29376 864 aa12.63□□□□□ -0.39
USP48-207ENST00000471752 FAM50AQ14320 339 aaKnown RBP12.63□□□□□ -0.39
USP48-207ENST00000471752 ANKLE2Q86XL3 938 aa12.63□□□□□ -0.39
USP48-207ENST00000471752 THEMISQ8N1K5 641 aaPredicted RBP12.63□□□□□ -0.39
USP48-207ENST00000471752 ZNF142P52746 1687 aaPredicted RBP12.63□□□□□ -0.39
USP48-207ENST00000471752 PTPN23Q9H3S7 1636 aa12.62□□□□□ -0.39
USP48-207ENST00000471752 NEURL4Q96JN8 1562 aa12.62□□□□□ -0.39
USP48-207ENST00000471752 ERVK-7P63135 1459 aa12.6□□□□□ -0.39
USP48-207ENST00000471752 RNF17Q9BXT8 1623 aaKnown RBP12.6□□□□□ -0.39
USP48-207ENST00000471752 DUOX2Q9NRD8 1548 aa12.6□□□□□ -0.39
USP48-207ENST00000471752 CFAP65Q6ZU64 1925 aaKnown RBP12.59□□□□□ -0.39
USP48-207ENST00000471752 IDI1Q13907 227 aa12.58□□□□□ -0.4
USP48-207ENST00000471752 UGGT1Q9NYU2 1555 aa12.58□□□□□ -0.4
USP48-207ENST00000471752 SPATA31D1Q6ZQQ2 1576 aa12.57□□□□□ -0.4
USP48-207ENST00000471752 NPHP4O75161 1426 aaPredicted RBP12.57□□□□□ -0.4
USP48-207ENST00000471752 PIP4K2BP78356 416 aa12.57□□□□□ -0.4
USP48-207ENST00000471752 NLRP1Q9C000 1473 aa12.57□□□□□ -0.4
USP48-207ENST00000471752 CEP152O94986 1710 aa12.57□□□□□ -0.4
USP48-207ENST00000471752 SHANK2Q9UPX8 1470 aa12.56□□□□□ -0.4
USP48-207ENST00000471752 DISP3Q9P2K9 1392 aa12.56□□□□□ -0.4
USP48-207ENST00000471752 HSPA1LP34931 641 aa12.55□□□□□ -0.4
USP48-207ENST00000471752 TXNDC2Q86VQ3 553 aa12.55□□□□□ -0.4
USP48-207ENST00000471752 VWDEQ8N2E2 1590 aa12.55□□□□□ -0.4
USP48-207ENST00000471752 ANKRD30AQ9BXX3 1397 aa12.55□□□□□ -0.4
USP48-207ENST00000471752 ERBINQ96RT1 1412 aa12.54□□□□□ -0.4
USP48-207ENST00000471752 FAM135AQ9P2D6 1515 aa12.54□□□□□ -0.4
USP48-207ENST00000471752 ITGAEP38570 1179 aa12.54□□□□□ -0.4
USP48-207ENST00000471752 MED14O60244 1454 aa12.53□□□□□ -0.4
USP48-207ENST00000471752 EIF2AK4Q9P2K8 1649 aaKnown RBP12.53□□□□□ -0.4
USP48-207ENST00000471752 RBM33Q96EV2 1170 aaKnown RBP12.53□□□□□ -0.4
USP48-207ENST00000471752 SCAF1Q9H7N4 1312 aaKnown RBP12.53□□□□□ -0.4
USP48-207ENST00000471752 ARHGAP31Q2M1Z3 1444 aa12.53□□□□□ -0.4
USP48-207ENST00000471752 CROCC2H7BZ55 1655 aa12.52□□□□□ -0.4
USP48-207ENST00000471752 IQSEC2Q5JU85 1478 aa12.52□□□□□ -0.41
USP48-207ENST00000471752 PRDM15P57071 1507 aaPredicted RBP12.52□□□□□ -0.41
USP48-207ENST00000471752 ALKQ9UM73 1620 aa12.51□□□□□ -0.41
USP48-207ENST00000471752 SLC26A8Q96RN1 970 aa12.5□□□□□ -0.41
USP48-207ENST00000471752 STRCP1A6NGW2 1772 aa12.5□□□□□ -0.41
USP48-207ENST00000471752 ADGRL2O95490 1459 aa12.49□□□□□ -0.41
USP48-207ENST00000471752 ARHGAP23Q9P227 1491 aa12.49□□□□□ -0.41
USP48-207ENST00000471752 ANKRD50Q9ULJ7 1429 aa12.49□□□□□ -0.41
USP48-207ENST00000471752 KANK1Q14678 1352 aa12.49□□□□□ -0.41
USP48-207ENST00000471752 POLR1AO95602 1720 aaPredicted RBP12.48□□□□□ -0.41
USP48-207ENST00000471752 UBR1Q8IWV7 1749 aa12.48□□□□□ -0.41
USP48-207ENST00000471752 LRRC7Q96NW7 1537 aa12.48□□□□□ -0.41
USP48-207ENST00000471752 TMEM2Q9UHN6 1383 aa12.48□□□□□ -0.41
USP48-207ENST00000471752 NUTM2DQ5VT03 806 aaPredicted RBP12.48□□□□□ -0.41
USP48-207ENST00000471752 STAG3Q9UJ98 1225 aa12.48□□□□□ -0.41
USP48-207ENST00000471752 ZC3H13Q5T200 1668 aaKnown RBP12.48□□□□□ -0.41
USP48-207ENST00000471752 DEPDC5O75140 1603 aa12.48□□□□□ -0.41
USP48-207ENST00000471752 SYNMO15061 1565 aa12.47□□□□□ -0.41
USP48-207ENST00000471752 NOS1P29475 1434 aa12.47□□□□□ -0.41
USP48-207ENST00000471752 PIK3C2BO00750 1634 aa12.47□□□□□ -0.41
USP48-207ENST00000471752 LMTK2Q8IWU2 1503 aa12.47□□□□□ -0.41
USP48-207ENST00000471752 SCAF11Q99590 1463 aaKnown RBP12.46□□□□□ -0.41
USP48-207ENST00000471752 TOM1O60784 492 aa12.46□□□□□ -0.41
USP48-207ENST00000471752 SLIT1O75093 1534 aa12.46□□□□□ -0.42
USP48-207ENST00000471752 IQGAP1P46940 1657 aa12.45□□□□□ -0.42
USP48-207ENST00000471752 EID1Q9Y6B2 187 aa12.45□□□□□ -0.42
USP48-207ENST00000471752 CPS1P31327 1500 aa12.45□□□□□ -0.42
USP48-207ENST00000471752 EFCAB6Q5THR3 1501 aa12.42□□□□□ -0.42
USP48-207ENST00000471752 CHGAP10645 457 aaKnown RBP12.42□□□□□ -0.42
USP48-207ENST00000471752 SLC52A1Q9NWF4 448 aa12.42□□□□□ -0.42
USP48-207ENST00000471752 BCANQ96GW7 911 aa12.41□□□□□ -0.42
USP48-207ENST00000471752 TET3O43151 1660 aa12.41□□□□□ -0.42
USP48-207ENST00000471752 NUP155O75694 1391 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms