RNA–Protein interactions for RNA: ENST00000471167.1

PRPF40A-206, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 333 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-206ENST00000471167 GRXCR2A6NFK2 248 aa13.44□□□□□ -0.26
PRPF40A-206ENST00000471167 NBR1Q14596 966 aa13.43□□□□□ -0.26
PRPF40A-206ENST00000471167 FBXW7Q969H0 707 aa13.43□□□□□ -0.26
PRPF40A-206ENST00000471167 RBM33Q96EV2 1170 aaKnown RBP13.43□□□□□ -0.26
PRPF40A-206ENST00000471167 SEMA3EO15041 775 aa13.42□□□□□ -0.26
PRPF40A-206ENST00000471167 PTPREP23469 700 aa13.42□□□□□ -0.26
PRPF40A-206ENST00000471167 TSR1Q2NL82 804 aaKnown RBP13.42□□□□□ -0.26
PRPF40A-206ENST00000471167 C6orf132Q5T0Z8 1188 aa13.42□□□□□ -0.26
PRPF40A-206ENST00000471167 HRO43593 1189 aa13.41□□□□□ -0.26
PRPF40A-206ENST00000471167 EN1Q05925 392 aaPredicted RBP13.41□□□□□ -0.26
PRPF40A-206ENST00000471167 ADGRD1Q6QNK2 874 aa13.41□□□□□ -0.26
PRPF40A-206ENST00000471167 P3H3Q8IVL6 736 aa13.41□□□□□ -0.26
PRPF40A-206ENST00000471167 ZBED2Q9BTP6 218 aa13.41□□□□□ -0.26
PRPF40A-206ENST00000471167 VPS9D1Q9Y2B5 631 aa13.4□□□□□ -0.26
PRPF40A-206ENST00000471167 TK2O00142 265 aa13.38□□□□□ -0.27
PRPF40A-206ENST00000471167 SLC4A5Q9BY07 1137 aa13.37□□□□□ -0.27
PRPF40A-206ENST00000471167 PPP1R3GB7ZBB8 358 aa13.35□□□□□ -0.27
PRPF40A-206ENST00000471167 PROX2Q3B8N5 592 aa13.35□□□□□ -0.27
PRPF40A-206ENST00000471167 CDHR5Q9HBB8 845 aa13.35□□□□□ -0.27
PRPF40A-206ENST00000471167 BHMG1C9JSJ3 638 aaPredicted RBP13.34□□□□□ -0.27
PRPF40A-206ENST00000471167 TESPA1A2RU30 521 aaPredicted RBP13.33□□□□□ -0.28
PRPF40A-206ENST00000471167 MAP3K7O43318 606 aa13.32□□□□□ -0.28
PRPF40A-206ENST00000471167 NPDC1Q9NQX5 325 aaPredicted RBP13.32□□□□□ -0.28
PRPF40A-206ENST00000471167 FAM198AQ9UFP1 575 aa13.29□□□□□ -0.28
PRPF40A-206ENST00000471167 MYT1LQ9UL68 1186 aa13.29□□□□□ -0.28
PRPF40A-206ENST00000471167 C3orf80F5H4A9 247 aa13.27□□□□□ -0.29
PRPF40A-206ENST00000471167 KCNH8Q96L42 1107 aa13.27□□□□□ -0.29
PRPF40A-206ENST00000471167 TSKSQ9UJT2 592 aa13.25□□□□□ -0.29
PRPF40A-206ENST00000471167 TRIM6-TRIM34B2RNG4 842 aa13.22□□□□□ -0.29
PRPF40A-206ENST00000471167 RNF166Q96A37 237 aaPredicted RBP13.22□□□□□ -0.29
PRPF40A-206ENST00000471167 KIAA1468Q9P260 1216 aa13.22□□□□□ -0.29
PRPF40A-206ENST00000471167 RBM26Q5T8P6 1007 aaKnown RBP13.21□□□□□ -0.29
PRPF40A-206ENST00000471167 RABGEF1Q9UJ41 708 aa13.21□□□□□ -0.29
PRPF40A-206ENST00000471167 ONECUT3O60422 494 aaPredicted RBP13.19□□□□□ -0.3
PRPF40A-206ENST00000471167 PRSS12P56730 875 aa13.19□□□□□ -0.3
PRPF40A-206ENST00000471167 TTC13Q8NBP0 860 aa13.19□□□□□ -0.3
PRPF40A-206ENST00000471167 CDCA7LQ96GN5 454 aa13.19□□□□□ -0.3
PRPF40A-206ENST00000471167 PTGDRQ13258 359 aa13.17□□□□□ -0.3
PRPF40A-206ENST00000471167 GPR37O15354 613 aa13.15□□□□□ -0.3
PRPF40A-206ENST00000471167 CERKQ8TCT0 537 aa13.14□□□□□ -0.31
PRPF40A-206ENST00000471167 SEPT9Q9UHD8 586 aaPredicted RBP13.13□□□□□ -0.31
PRPF40A-206ENST00000471167 PADI6Q6TGC4 694 aa13.12□□□□□ -0.31
PRPF40A-206ENST00000471167 MRPL50Q8N5N7 158 aaKnown RBP13.11□□□□□ -0.31
PRPF40A-206ENST00000471167 KCTD12Q96CX2 325 aaKnown RBP13.11□□□□□ -0.31
PRPF40A-206ENST00000471167 NUTM2FA1L443 756 aa13.1□□□□□ -0.31
PRPF40A-206ENST00000471167 SMAPO00193 183 aa13.1□□□□□ -0.31
PRPF40A-206ENST00000471167 RBM27Q9P2N5 1060 aaKnown RBP13.09□□□□□ -0.31
PRPF40A-206ENST00000471167 NBPF3Q9H094 633 aa13.08□□□□□ -0.32
PRPF40A-206ENST00000471167 FECHP22830 423 aa13.07□□□□□ -0.32
PRPF40A-206ENST00000471167 TATDN2Q93075 761 aa13.07□□□□□ -0.32
PRPF40A-206ENST00000471167 LAPTM4BQ86VI4 370 aa13.06□□□□□ -0.32
PRPF40A-206ENST00000471167 PACS2Q86VP3 889 aa13.06□□□□□ -0.32
PRPF40A-206ENST00000471167 SLC24A1O60721 1099 aa13.05□□□□□ -0.32
PRPF40A-206ENST00000471167 SMYD5Q6GMV2 418 aa13.05□□□□□ -0.32
PRPF40A-206ENST00000471167 ZFRQ96KR1 1074 aaKnown RBP13.05□□□□□ -0.32
PRPF40A-206ENST00000471167 FAM98CQ17RN3 349 aaKnown RBP13.04□□□□□ -0.32
PRPF40A-206ENST00000471167 FAM161AQ3B820 660 aa13.04□□□□□ -0.32
PRPF40A-206ENST00000471167 THSD4Q6ZMP0 1018 aa13.04□□□□□ -0.32
PRPF40A-206ENST00000471167 NUDT18Q6ZVK8 323 aa13.04□□□□□ -0.32
PRPF40A-206ENST00000471167 STAC3Q96MF2 364 aa13.04□□□□□ -0.32
PRPF40A-206ENST00000471167 WNT2BQ93097 391 aa13.03□□□□□ -0.32
PRPF40A-206ENST00000471167 EYA1Q99502 592 aa13.03□□□□□ -0.32
PRPF40A-206ENST00000471167 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.02□□□□□ -0.33
PRPF40A-206ENST00000471167 PNMA3Q9UL41 463 aa13.02□□□□□ -0.33
PRPF40A-206ENST00000471167 FCHSD2O94868 740 aa13.01□□□□□ -0.33
PRPF40A-206ENST00000471167 BCAMP50895 628 aa13□□□□□ -0.33
PRPF40A-206ENST00000471167 ADGRG1Q9Y653 693 aa12.99□□□□□ -0.33
PRPF40A-206ENST00000471167 SOWAHBA6NEL2 793 aa12.97□□□□□ -0.33
PRPF40A-206ENST00000471167 GOLGA8CPA6NN73 597 aa12.97□□□□□ -0.33
PRPF40A-206ENST00000471167 PTPN5P54829 565 aa12.97□□□□□ -0.33
PRPF40A-206ENST00000471167 HIC1Q14526 733 aa12.97□□□□□ -0.33
PRPF40A-206ENST00000471167 HCSTQ9UBK5 93 aa12.97□□□□□ -0.33
PRPF40A-206ENST00000471167 NBPF26B4DH59 902 aa12.96□□□□□ -0.33
PRPF40A-206ENST00000471167 GPIHBP1Q8IV16 184 aa12.95□□□□□ -0.34
PRPF40A-206ENST00000471167 GNPATO15228 680 aa12.94□□□□□ -0.34
PRPF40A-206ENST00000471167 SAMD7Q7Z3H4 446 aa12.94□□□□□ -0.34
PRPF40A-206ENST00000471167 ANKK1Q8NFD2 765 aa12.94□□□□□ -0.34
PRPF40A-206ENST00000471167 WBP1LQ9NX94 342 aa12.91□□□□□ -0.34
PRPF40A-206ENST00000471167 PHOX2BQ99453 314 aa12.9□□□□□ -0.34
PRPF40A-206ENST00000471167 LMOD2Q6P5Q4 547 aa12.89□□□□□ -0.35
PRPF40A-206ENST00000471167 PXYLP1Q8TE99 480 aa12.89□□□□□ -0.35
PRPF40A-206ENST00000471167 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.89□□□□□ -0.35
PRPF40A-206ENST00000471167 SWT1Q5T5J6 900 aaKnown RBP12.87□□□□□ -0.35
PRPF40A-206ENST00000471167 LRCH3Q96II8 777 aa12.87□□□□□ -0.35
PRPF40A-206ENST00000471167 RCCD1A6NED2 376 aa12.85□□□□□ -0.35
PRPF40A-206ENST00000471167 METTL3Q86U44 580 aaKnown RBP12.85□□□□□ -0.35
PRPF40A-206ENST00000471167 HPS5Q9UPZ3 1129 aa12.85□□□□□ -0.35
PRPF40A-206ENST00000471167 RBM46Q8TBY0 533 aaKnown RBP12.84□□□□□ -0.35
PRPF40A-206ENST00000471167 NLRP7Q8WX94 980 aa12.83□□□□□ -0.36
PRPF40A-206ENST00000471167 TMEM134Q9H6X4 195 aa12.83□□□□□ -0.36
PRPF40A-206ENST00000471167 TSR3Q9UJK0 312 aaKnown RBP12.83□□□□□ -0.36
PRPF40A-206ENST00000471167 DNAJB2P25686 324 aa12.8□□□□□ -0.36
PRPF40A-206ENST00000471167 ZC3H15Q8WU90 426 aaKnown RBP12.8□□□□□ -0.36
PRPF40A-206ENST00000471167 TULP1O00294 542 aaPredicted RBP12.79□□□□□ -0.36
PRPF40A-206ENST00000471167 OATP04181 439 aa12.79□□□□□ -0.36
PRPF40A-206ENST00000471167 IRF6O14896 467 aa12.77□□□□□ -0.37
PRPF40A-206ENST00000471167 ZMYND10O75800 440 aa12.77□□□□□ -0.37
PRPF40A-206ENST00000471167 MAP2K5Q13163 448 aa12.77□□□□□ -0.37
PRPF40A-206ENST00000471167 SLC10A3P09131 477 aa12.76□□□□□ -0.37
PRPF40A-206ENST00000471167 APLP1P51693 650 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms