RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 KDM5DQ9BY66 1539 aa14.49□□□□□ -0.09
SF3A1-206ENST00000471037 RSPH4AQ5TD94 716 aa14.48□□□□□ -0.09
SF3A1-206ENST00000471037 PZPP20742 1482 aa14.48□□□□□ -0.09
SF3A1-206ENST00000471037 ILDR2Q71H61 639 aa14.47□□□□□ -0.09
SF3A1-206ENST00000471037 ARHGEF5Q12774 1597 aa14.47□□□□□ -0.09
SF3A1-206ENST00000471037 TNRQ92752 1358 aa14.46□□□□□ -0.1
SF3A1-206ENST00000471037 KIF3BO15066 747 aa14.45□□□□□ -0.1
SF3A1-206ENST00000471037 NEURL4Q96JN8 1562 aa14.44□□□□□ -0.1
SF3A1-206ENST00000471037 POLR1AO95602 1720 aaPredicted RBP14.44□□□□□ -0.1
SF3A1-206ENST00000471037 SOCS7O14512 581 aa14.43□□□□□ -0.1
SF3A1-206ENST00000471037 UBAP1LF5GYI3 381 aa14.42□□□□□ -0.1
SF3A1-206ENST00000471037 FBXO31Q5XUX0 539 aaPredicted RBP14.42□□□□□ -0.1
SF3A1-206ENST00000471037 NLRP1Q9C000 1473 aa14.42□□□□□ -0.1
SF3A1-206ENST00000471037 WASHC2CQ9Y4E1 1318 aa14.41□□□□□ -0.1
SF3A1-206ENST00000471037 MAST1Q9Y2H9 1570 aa14.41□□□□□ -0.1
SF3A1-206ENST00000471037 RNF17Q9BXT8 1623 aaKnown RBP14.41□□□□□ -0.1
SF3A1-206ENST00000471037 CPS1P31327 1500 aa14.41□□□□□ -0.1
SF3A1-206ENST00000471037 MIA2Q96PC5 1412 aa14.41□□□□□ -0.1
SF3A1-206ENST00000471037 LRRC9Q6ZRR7 1453 aa14.4□□□□□ -0.1
SF3A1-206ENST00000471037 VPS8Q8N3P4 1428 aa14.4□□□□□ -0.1
SF3A1-206ENST00000471037 TSPY4P0CV99 314 aa14.39□□□□□ -0.11
SF3A1-206ENST00000471037 TSPY10P0CW01 314 aa14.39□□□□□ -0.11
SF3A1-206ENST00000471037 ZC3H13Q5T200 1668 aaKnown RBP14.39□□□□□ -0.11
SF3A1-206ENST00000471037 UGGT1Q9NYU2 1555 aa14.39□□□□□ -0.11
SF3A1-206ENST00000471037 MED14O60244 1454 aa14.38□□□□□ -0.11
SF3A1-206ENST00000471037 SHANK2Q9UPX8 1470 aa14.38□□□□□ -0.11
SF3A1-206ENST00000471037 DEPDC5O75140 1603 aa14.37□□□□□ -0.11
SF3A1-206ENST00000471037 EIF2AK4Q9P2K8 1649 aaKnown RBP14.37□□□□□ -0.11
SF3A1-206ENST00000471037 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.37□□□□□ -0.11
SF3A1-206ENST00000471037 ABCC3O15438 1527 aa14.37□□□□□ -0.11
SF3A1-206ENST00000471037 THEMISQ8N1K5 641 aaPredicted RBP14.37□□□□□ -0.11
SF3A1-206ENST00000471037 MAP3K1Q13233 1512 aa14.36□□□□□ -0.11
SF3A1-206ENST00000471037 VWDEQ8N2E2 1590 aa14.36□□□□□ -0.11
SF3A1-206ENST00000471037 ANKLE2Q86XL3 938 aa14.36□□□□□ -0.11
SF3A1-206ENST00000471037 MROH1Q8NDA8 1641 aa14.34□□□□□ -0.11
SF3A1-206ENST00000471037 NPHP4O75161 1426 aaPredicted RBP14.34□□□□□ -0.11
SF3A1-206ENST00000471037 MYOM3Q5VTT5 1437 aa14.33□□□□□ -0.11
SF3A1-206ENST00000471037 ERVK-7P63135 1459 aa14.32□□□□□ -0.12
SF3A1-206ENST00000471037 IQGAP1P46940 1657 aa14.32□□□□□ -0.12
SF3A1-206ENST00000471037 TOM1O60784 492 aa14.31□□□□□ -0.12
SF3A1-206ENST00000471037 DUOX2Q9NRD8 1548 aa14.31□□□□□ -0.12
SF3A1-206ENST00000471037 LOC105371045A0A1W2PR82 267 aa14.3□□□□□ -0.12
SF3A1-206ENST00000471037 KANK4Q5T7N3 995 aaPredicted RBP14.3□□□□□ -0.12
SF3A1-206ENST00000471037 PRDM15P57071 1507 aaPredicted RBP14.29□□□□□ -0.12
SF3A1-206ENST00000471037 ALKQ9UM73 1620 aa14.29□□□□□ -0.12
SF3A1-206ENST00000471037 SYNMO15061 1565 aa14.28□□□□□ -0.12
SF3A1-206ENST00000471037 CEP152O94986 1710 aa14.28□□□□□ -0.12
SF3A1-206ENST00000471037 HSPA1LP34931 641 aa14.28□□□□□ -0.12
SF3A1-206ENST00000471037 UBR1Q8IWV7 1749 aa14.27□□□□□ -0.12
SF3A1-206ENST00000471037 MED1Q15648 1581 aaPredicted RBP14.27□□□□□ -0.12
SF3A1-206ENST00000471037 ARHGAP31Q2M1Z3 1444 aa14.27□□□□□ -0.12
SF3A1-206ENST00000471037 PIP4K2BP78356 416 aa14.27□□□□□ -0.13
SF3A1-206ENST00000471037 ERBINQ96RT1 1412 aa14.26□□□□□ -0.13
SF3A1-206ENST00000471037 SCAF1Q9H7N4 1312 aaKnown RBP14.26□□□□□ -0.13
SF3A1-206ENST00000471037 CROCC2H7BZ55 1655 aa14.26□□□□□ -0.13
SF3A1-206ENST00000471037 LRRC7Q96NW7 1537 aa14.25□□□□□ -0.13
SF3A1-206ENST00000471037 ARHGAP23Q9P227 1491 aa14.25□□□□□ -0.13
SF3A1-206ENST00000471037 KIF15Q9NS87 1388 aa14.25□□□□□ -0.13
SF3A1-206ENST00000471037 STRCP1A6NGW2 1772 aa14.25□□□□□ -0.13
SF3A1-206ENST00000471037 SLIT1O75093 1534 aa14.25□□□□□ -0.13
SF3A1-206ENST00000471037 SCAF11Q99590 1463 aaKnown RBP14.24□□□□□ -0.13
SF3A1-206ENST00000471037 ABCC5O15440 1437 aa14.24□□□□□ -0.13
SF3A1-206ENST00000471037 PTPN23Q9H3S7 1636 aa14.23□□□□□ -0.13
SF3A1-206ENST00000471037 DAPK1P53355 1430 aa14.21□□□□□ -0.13
SF3A1-206ENST00000471037 LMTK2Q8IWU2 1503 aa14.2□□□□□ -0.14
SF3A1-206ENST00000471037 FGD6Q6ZV73 1430 aa14.19□□□□□ -0.14
SF3A1-206ENST00000471037 LTKP29376 864 aa14.19□□□□□ -0.14
SF3A1-206ENST00000471037 KDM5AP29375 1690 aaKnown RBP14.19□□□□□ -0.14
SF3A1-206ENST00000471037 PIK3C2BO00750 1634 aa14.19□□□□□ -0.14
SF3A1-206ENST00000471037 TXNDC2Q86VQ3 553 aa14.17□□□□□ -0.14
SF3A1-206ENST00000471037 RRP7BPQ9NSQ0 103 aa14.17□□□□□ -0.14
SF3A1-206ENST00000471037 KANK1Q14678 1352 aa14.17□□□□□ -0.14
SF3A1-206ENST00000471037 TMEM2Q9UHN6 1383 aa14.17□□□□□ -0.14
SF3A1-206ENST00000471037 CFAP65Q6ZU64 1925 aaKnown RBP14.17□□□□□ -0.14
SF3A1-206ENST00000471037 ANKRD30AQ9BXX3 1397 aa14.15□□□□□ -0.14
SF3A1-206ENST00000471037 EID1Q9Y6B2 187 aa14.15□□□□□ -0.14
SF3A1-206ENST00000471037 EFCAB6Q5THR3 1501 aa14.15□□□□□ -0.14
SF3A1-206ENST00000471037 XIRP1Q702N8 1843 aaKnown RBP14.14□□□□□ -0.15
SF3A1-206ENST00000471037 APLP2Q06481 763 aa14.14□□□□□ -0.15
SF3A1-206ENST00000471037 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.14□□□□□ -0.154e-7■■■■□ 22.7
SF3A1-206ENST00000471037 NOS1P29475 1434 aa14.13□□□□□ -0.15
SF3A1-206ENST00000471037 ADGRL2O95490 1459 aa14.12□□□□□ -0.15
SF3A1-206ENST00000471037 ADGRB3O60242 1522 aa14.11□□□□□ -0.15
SF3A1-206ENST00000471037 IDI1Q13907 227 aa14.11□□□□□ -0.15
SF3A1-206ENST00000471037 PHF23Q9BUL5 403 aaPredicted RBP14.11□□□□□ -0.15
SF3A1-206ENST00000471037 TET3O43151 1660 aa14.1□□□□□ -0.15
SF3A1-206ENST00000471037 STAG3Q9UJ98 1225 aa14.1□□□□□ -0.15
SF3A1-206ENST00000471037 FAM135BQ49AJ0 1406 aa14.09□□□□□ -0.15
SF3A1-206ENST00000471037 CHIC2Q9UKJ5 165 aa14.09□□□□□ -0.15
SF3A1-206ENST00000471037 RPRD2Q5VT52 1461 aaKnown RBP14.09□□□□□ -0.15
SF3A1-206ENST00000471037 NWD1Q149M9 1564 aa14.09□□□□□ -0.15
SF3A1-206ENST00000471037 TMEM94Q12767 1356 aa14.09□□□□□ -0.15
SF3A1-206ENST00000471037 NKTRP30414 1462 aaKnown RBP14.07□□□□□ -0.16
SF3A1-206ENST00000471037 KCNA6P17658 529 aa14.07□□□□□ -0.16
SF3A1-206ENST00000471037 SLC52A1Q9NWF4 448 aa14.07□□□□□ -0.16
SF3A1-206ENST00000471037 SENP3Q9H4L4 574 aaPredicted RBP14.06□□□□□ -0.16
SF3A1-206ENST00000471037 ANKRD50Q9ULJ7 1429 aa14.06□□□□□ -0.16
SF3A1-206ENST00000471037 SLC26A8Q96RN1 970 aa14.04□□□□□ -0.16
SF3A1-206ENST00000471037 ZFYVE9O95405 1425 aa14.04□□□□□ -0.16
SF3A1-206ENST00000471037 ROBO1Q9Y6N7 1651 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms