RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 MYO3AQ8NEV4 1616 aa8.94□□□□□ -0.98
PTPN4-209ENST00000469511 ESF1Q9H501 851 aaKnown RBP8.93□□□□□ -0.98
PTPN4-209ENST00000469511 ALKQ9UM73 1620 aa8.93□□□□□ -0.98
PTPN4-209ENST00000469511 MROH2AA6NES4 1674 aa8.93□□□□□ -0.98
PTPN4-209ENST00000469511 CDC42BPAQ5VT25 1732 aa8.92□□□□□ -0.98
PTPN4-209ENST00000469511 ZNF142P52746 1687 aaPredicted RBP8.92□□□□□ -0.98
PTPN4-209ENST00000469511 ABCC1P33527 1531 aa8.92□□□□□ -0.98
PTPN4-209ENST00000469511 TROQ12816 1431 aaPredicted RBP8.92□□□□□ -0.98
PTPN4-209ENST00000469511 PREX2Q70Z35 1606 aa8.91□□□□□ -0.98
PTPN4-209ENST00000469511 TCOF1Q13428 1488 aaKnown RBP8.91□□□□□ -0.98
PTPN4-209ENST00000469511 ZNF692Q9BU19 519 aaPredicted RBP8.91□□□□□ -0.98
PTPN4-209ENST00000469511 SSUH2Q9Y2M2 353 aa8.91□□□□□ -0.98
PTPN4-209ENST00000469511 CEP170BQ9Y4F5 1589 aaPredicted RBP8.9□□□□□ -0.98
PTPN4-209ENST00000469511 ARHGAP35Q9NRY4 1499 aa8.9□□□□□ -0.98
PTPN4-209ENST00000469511 NPATQ14207 1427 aa8.9□□□□□ -0.98
PTPN4-209ENST00000469511 SAMD9LQ8IVG5 1584 aa8.9□□□□□ -0.99
PTPN4-209ENST00000469511 PTPRKQ15262 1439 aa8.89□□□□□ -0.99
PTPN4-209ENST00000469511 CNTLNQ9NXG0 1405 aa8.89□□□□□ -0.99
PTPN4-209ENST00000469511 PLA2R1Q13018 1463 aa8.89□□□□□ -0.99
PTPN4-209ENST00000469511 STRCP1A6NGW2 1772 aa8.89□□□□□ -0.99
PTPN4-209ENST00000469511 DNMT1P26358 1616 aaKnown RBP8.88□□□□□ -0.99
PTPN4-209ENST00000469511 NEURL4Q96JN8 1562 aa8.88□□□□□ -0.99
PTPN4-209ENST00000469511 HNRNPMP52272 730 aaKnown RBP eCLIP8.88□□□□□ -0.99
PTPN4-209ENST00000469511 PKD2Q13563 968 aa8.88□□□□□ -0.99
PTPN4-209ENST00000469511 RGS17Q9UGC6 210 aaPredicted RBP8.88□□□□□ -0.99
PTPN4-209ENST00000469511 VASPP50552 380 aaPredicted RBP8.87□□□□□ -0.99
PTPN4-209ENST00000469511 ZNF777Q9ULD5 760 aaPredicted RBP8.87□□□□□ -0.99
PTPN4-209ENST00000469511 POLR1AO95602 1720 aaPredicted RBP8.87□□□□□ -0.99
PTPN4-209ENST00000469511 GGT6Q6P531 493 aa8.86□□□□□ -0.99
PTPN4-209ENST00000469511 CDK11AQ9UQ88 783 aaPredicted RBP8.86□□□□□ -0.99
PTPN4-209ENST00000469511 SYCP2Q9BX26 1530 aa8.85□□□□□ -0.99
PTPN4-209ENST00000469511 SHANK2Q9UPX8 1470 aa8.85□□□□□ -0.99
PTPN4-209ENST00000469511 FBXO31Q5XUX0 539 aaPredicted RBP8.85□□□□□ -0.99
PTPN4-209ENST00000469511 FMN1Q68DA7 1419 aa8.85□□□□□ -0.99
PTPN4-209ENST00000469511 VWDEQ8N2E2 1590 aa8.85□□□□□ -0.99
PTPN4-209ENST00000469511 PLXNC1O60486 1568 aa8.84□□□□□ -0.99
PTPN4-209ENST00000469511 TOM1O60784 492 aa8.84□□□□□ -0.99
PTPN4-209ENST00000469511 CLIP1P30622 1438 aa8.84□□□□□ -0.99
PTPN4-209ENST00000469511 A2ML1A8K2U0 1454 aa8.83□□□□□ -1
PTPN4-209ENST00000469511 UBTFP17480 764 aaKnown RBP8.83□□□□□ -1
PTPN4-209ENST00000469511 ATP7AQ04656 1500 aa8.83□□□□□ -1
PTPN4-209ENST00000469511 A2MP01023 1474 aa8.83□□□□□ -1
PTPN4-209ENST00000469511 SPAG9O60271 1321 aaKnown RBP8.82□□□□□ -1
PTPN4-209ENST00000469511 INO80Q9ULG1 1556 aaPredicted RBP8.82□□□□□ -1
PTPN4-209ENST00000469511 EEA1Q15075 1411 aa8.82□□□□□ -1
PTPN4-209ENST00000469511 CPS1P31327 1500 aa8.82□□□□□ -1
PTPN4-209ENST00000469511 GPATCH8Q9UKJ3 1502 aaKnown RBP8.81□□□□□ -1
PTPN4-209ENST00000469511 XIRP1Q702N8 1843 aaKnown RBP8.81□□□□□ -1
PTPN4-209ENST00000469511 CFAP65Q6ZU64 1925 aaKnown RBP8.81□□□□□ -1
PTPN4-209ENST00000469511 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.81□□□□□ -1
PTPN4-209ENST00000469511 SETD1AO15047 1707 aaKnown RBP8.8□□□□□ -1
PTPN4-209ENST00000469511 POTEAQ6S8J7 498 aa8.8□□□□□ -1
PTPN4-209ENST00000469511 ZNF644Q9H582 1327 aaPredicted RBP8.8□□□□□ -1
PTPN4-209ENST00000469511 STAG3Q9UJ98 1225 aa8.79□□□□□ -1
PTPN4-209ENST00000469511 LRRC7Q96NW7 1537 aa8.79□□□□□ -1
PTPN4-209ENST00000469511 ADGBQ8N7X0 1667 aa8.78□□□□□ -1
PTPN4-209ENST00000469511 TNRQ92752 1358 aa8.77□□□□□ -1.01
PTPN4-209ENST00000469511 IFNLR1Q8IU57 520 aaPredicted RBP8.77□□□□□ -1.01
PTPN4-209ENST00000469511 NPHP4O75161 1426 aaPredicted RBP8.77□□□□□ -1.01
PTPN4-209ENST00000469511 CASKIN1Q8WXD9 1431 aa8.77□□□□□ -1.01
PTPN4-209ENST00000469511 IQGAP1P46940 1657 aa8.76□□□□□ -1.01
PTPN4-209ENST00000469511 ANKLE2Q86XL3 938 aa8.76□□□□□ -1.01
PTPN4-209ENST00000469511 ZC3H13Q5T200 1668 aaKnown RBP8.75□□□□□ -1.01
PTPN4-209ENST00000469511 CFDP1Q9UEE9 299 aaPredicted RBP8.75□□□□□ -1.01
PTPN4-209ENST00000469511 DEPDC5O75140 1603 aa8.75□□□□□ -1.01
PTPN4-209ENST00000469511 MED14O60244 1454 aa8.75□□□□□ -1.01
PTPN4-209ENST00000469511 KIAA1107Q9UPP5 1409 aa8.74□□□□□ -1.01
PTPN4-209ENST00000469511 RNF17Q9BXT8 1623 aaKnown RBP8.74□□□□□ -1.01
PTPN4-209ENST00000469511 KIF3BO15066 747 aa8.74□□□□□ -1.01
PTPN4-209ENST00000469511 CCDC18Q5T9S5 1454 aa8.74□□□□□ -1.01
PTPN4-209ENST00000469511 MBD5Q9P267 1494 aa8.74□□□□□ -1.01
PTPN4-209ENST00000469511 UGGT1Q9NYU2 1555 aa8.73□□□□□ -1.01
PTPN4-209ENST00000469511 MIA2Q96PC5 1412 aa8.73□□□□□ -1.01
PTPN4-209ENST00000469511 PZPP20742 1482 aa8.73□□□□□ -1.01
PTPN4-209ENST00000469511 DHX29Q7Z478 1369 aaKnown RBP8.73□□□□□ -1.01
PTPN4-209ENST00000469511 THEMISQ8N1K5 641 aaPredicted RBP8.72□□□□□ -1.01
PTPN4-209ENST00000469511 TIAM1Q13009 1591 aa8.71□□□□□ -1.02
PTPN4-209ENST00000469511 RBM33Q96EV2 1170 aaKnown RBP8.71□□□□□ -1.02
PTPN4-209ENST00000469511 RBM42Q9BTD8 480 aaKnown RBP8.71□□□□□ -1.02
PTPN4-209ENST00000469511 CCNB3Q8WWL7 1395 aa8.71□□□□□ -1.02
PTPN4-209ENST00000469511 KDM5DQ9BY66 1539 aa8.7□□□□□ -1.02
PTPN4-209ENST00000469511 SYNMO15061 1565 aa8.7□□□□□ -1.02
PTPN4-209ENST00000469511 PLEKHH2Q8IVE3 1493 aa8.7□□□□□ -1.02
PTPN4-209ENST00000469511 UBR1Q8IWV7 1749 aa8.69□□□□□ -1.02
PTPN4-209ENST00000469511 LTKP29376 864 aa8.69□□□□□ -1.02
PTPN4-209ENST00000469511 WASHC2CQ9Y4E1 1318 aa8.69□□□□□ -1.02
PTPN4-209ENST00000469511 FYCO1Q9BQS8 1478 aa8.69□□□□□ -1.02
PTPN4-209ENST00000469511 FAM135AQ9P2D6 1515 aa8.69□□□□□ -1.02
PTPN4-209ENST00000469511 ROBO1Q9Y6N7 1651 aa8.69□□□□□ -1.02
PTPN4-209ENST00000469511 NLRP1Q9C000 1473 aa8.68□□□□□ -1.02
PTPN4-209ENST00000469511 CEP152O94986 1710 aa8.68□□□□□ -1.02
PTPN4-209ENST00000469511 RTEL1-TNFRSF6BF6WH68 1400 aa8.67□□□□□ -1.02
PTPN4-209ENST00000469511 NCOA2Q15596 1464 aa8.67□□□□□ -1.02
PTPN4-209ENST00000469511 AKT1S1Q96B36 256 aa8.67□□□□□ -1.02
PTPN4-209ENST00000469511 FAM135BQ49AJ0 1406 aa8.65□□□□□ -1.02
PTPN4-209ENST00000469511 UPF1Q92900 1129 aaKnown RBP eCLIP8.65□□□□□ -1.02
PTPN4-209ENST00000469511 MROH1Q8NDA8 1641 aa8.65□□□□□ -1.03
PTPN4-209ENST00000469511 ABCC3O15438 1527 aa8.64□□□□□ -1.03
PTPN4-209ENST00000469511 ERVK-7P63135 1459 aa8.64□□□□□ -1.03
PTPN4-209ENST00000469511 MTUS2Q5JR59 1369 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms