RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 TSPY10P0CW01 314 aa19.52■□□□□ 0.72
HDAC3-204ENST00000469207 PLA2R1Q13018 1463 aa19.52■□□□□ 0.72
HDAC3-204ENST00000469207 TCOF1Q13428 1488 aaKnown RBP19.52■□□□□ 0.72
HDAC3-204ENST00000469207 ZNF142P52746 1687 aaPredicted RBP19.51■□□□□ 0.71
HDAC3-204ENST00000469207 A2ML1A8K2U0 1454 aa19.5■□□□□ 0.71
HDAC3-204ENST00000469207 UBAP1LF5GYI3 381 aa19.5■□□□□ 0.71
HDAC3-204ENST00000469207 DNMT1P26358 1616 aaKnown RBP19.5■□□□□ 0.71
HDAC3-204ENST00000469207 TNRQ92752 1358 aa19.49■□□□□ 0.71
HDAC3-204ENST00000469207 LRRC9Q6ZRR7 1453 aa19.48■□□□□ 0.71
HDAC3-204ENST00000469207 VPS8Q8N3P4 1428 aa19.47■□□□□ 0.71
HDAC3-204ENST00000469207 IQSEC2Q5JU85 1478 aa19.47■□□□□ 0.71
HDAC3-204ENST00000469207 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.45■□□□□ 0.7
HDAC3-204ENST00000469207 PZPP20742 1482 aa19.45■□□□□ 0.7
HDAC3-204ENST00000469207 KDM5DQ9BY66 1539 aa19.44■□□□□ 0.7
HDAC3-204ENST00000469207 ARHGEF5Q12774 1597 aa19.44■□□□□ 0.7
HDAC3-204ENST00000469207 MIA2Q96PC5 1412 aa19.43■□□□□ 0.7
HDAC3-204ENST00000469207 ANKLE2Q86XL3 938 aa19.41■□□□□ 0.7
HDAC3-204ENST00000469207 THEMISQ8N1K5 641 aaPredicted RBP19.41■□□□□ 0.7
HDAC3-204ENST00000469207 PIP4K2BP78356 416 aa19.39■□□□□ 0.69
HDAC3-204ENST00000469207 NEURL4Q96JN8 1562 aa19.39■□□□□ 0.69
HDAC3-204ENST00000469207 SCAF1Q9H7N4 1312 aaKnown RBP19.38■□□□□ 0.69
HDAC3-204ENST00000469207 MYOM3Q5VTT5 1437 aa19.36■□□□□ 0.69
HDAC3-204ENST00000469207 SOCS7O14512 581 aa19.36■□□□□ 0.69
HDAC3-204ENST00000469207 SPATA31D1Q6ZQQ2 1576 aa19.36■□□□□ 0.69
HDAC3-204ENST00000469207 UGGT1Q9NYU2 1555 aa19.36■□□□□ 0.69
HDAC3-204ENST00000469207 SHANK2Q9UPX8 1470 aa19.35■□□□□ 0.69
HDAC3-204ENST00000469207 RRP7BPQ9NSQ0 103 aa19.34■□□□□ 0.69
HDAC3-204ENST00000469207 MAST1Q9Y2H9 1570 aa19.34■□□□□ 0.69
HDAC3-204ENST00000469207 ABCC3O15438 1527 aa19.34■□□□□ 0.69
HDAC3-204ENST00000469207 POLR1AO95602 1720 aaPredicted RBP19.34■□□□□ 0.69
HDAC3-204ENST00000469207 CFAP65Q6ZU64 1925 aaKnown RBP19.33■□□□□ 0.69
HDAC3-204ENST00000469207 HSPA1LP34931 641 aa19.33■□□□□ 0.68
HDAC3-204ENST00000469207 FAM135AQ9P2D6 1515 aa19.33■□□□□ 0.68
HDAC3-204ENST00000469207 NLRP1Q9C000 1473 aa19.33■□□□□ 0.68
HDAC3-204ENST00000469207 MAP3K1Q13233 1512 aa19.32■□□□□ 0.68
HDAC3-204ENST00000469207 NPHP4O75161 1426 aaPredicted RBP19.32■□□□□ 0.68
HDAC3-204ENST00000469207 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.31■□□□□ 0.68
HDAC3-204ENST00000469207 RNF17Q9BXT8 1623 aaKnown RBP19.31■□□□□ 0.68
HDAC3-204ENST00000469207 MROH1Q8NDA8 1641 aa19.3■□□□□ 0.68
HDAC3-204ENST00000469207 VWDEQ8N2E2 1590 aa19.29■□□□□ 0.68
HDAC3-204ENST00000469207 ABCC5O15440 1437 aa19.29■□□□□ 0.68
HDAC3-204ENST00000469207 TOM1O60784 492 aa19.29■□□□□ 0.68
HDAC3-204ENST00000469207 CHIC2Q9UKJ5 165 aa19.29■□□□□ 0.68
HDAC3-204ENST00000469207 ERVK-7P63135 1459 aa19.28■□□□□ 0.68
HDAC3-204ENST00000469207 SENP3Q9H4L4 574 aaPredicted RBP19.28■□□□□ 0.68
HDAC3-204ENST00000469207 CEP152O94986 1710 aa19.28■□□□□ 0.68
HDAC3-204ENST00000469207 MED14O60244 1454 aa19.28■□□□□ 0.68
HDAC3-204ENST00000469207 CPS1P31327 1500 aa19.27■□□□□ 0.68
HDAC3-204ENST00000469207 APLP2Q06481 763 aa19.27■□□□□ 0.68
HDAC3-204ENST00000469207 LTKP29376 864 aa19.26■□□□□ 0.67
HDAC3-204ENST00000469207 KIF15Q9NS87 1388 aa19.26■□□□□ 0.67
HDAC3-204ENST00000469207 DUOX2Q9NRD8 1548 aa19.25■□□□□ 0.67
HDAC3-204ENST00000469207 EIF2AK4Q9P2K8 1649 aaKnown RBP19.25■□□□□ 0.67
HDAC3-204ENST00000469207 DEPDC5O75140 1603 aa19.24■□□□□ 0.67
HDAC3-204ENST00000469207 ZC3H13Q5T200 1668 aaKnown RBP19.24■□□□□ 0.67
HDAC3-204ENST00000469207 TXNDC2Q86VQ3 553 aa19.23■□□□□ 0.67
HDAC3-204ENST00000469207 STRCP1A6NGW2 1772 aa19.23■□□□□ 0.67
HDAC3-204ENST00000469207 PTPN23Q9H3S7 1636 aa19.22■□□□□ 0.67
HDAC3-204ENST00000469207 IQGAP1P46940 1657 aa19.22■□□□□ 0.67
HDAC3-204ENST00000469207 DAPK1P53355 1430 aa19.21■□□□□ 0.67
HDAC3-204ENST00000469207 ALKQ9UM73 1620 aa19.21■□□□□ 0.67
HDAC3-204ENST00000469207 UBR1Q8IWV7 1749 aa19.2■□□□□ 0.66
HDAC3-204ENST00000469207 LRRC7Q96NW7 1537 aa19.19■□□□□ 0.66
HDAC3-204ENST00000469207 FGD6Q6ZV73 1430 aa19.18■□□□□ 0.66
HDAC3-204ENST00000469207 ARHGAP31Q2M1Z3 1444 aa19.17■□□□□ 0.66
HDAC3-204ENST00000469207 IDI1Q13907 227 aa19.17■□□□□ 0.66
HDAC3-204ENST00000469207 ERBINQ96RT1 1412 aa19.17■□□□□ 0.66
HDAC3-204ENST00000469207 CROCC2H7BZ55 1655 aa19.16■□□□□ 0.66
HDAC3-204ENST00000469207 SCAF11Q99590 1463 aaKnown RBP19.16■□□□□ 0.66
HDAC3-204ENST00000469207 PRDM15P57071 1507 aaPredicted RBP19.15■□□□□ 0.66
HDAC3-204ENST00000469207 STAG3Q9UJ98 1225 aa19.15■□□□□ 0.66
HDAC3-204ENST00000469207 ARHGAP23Q9P227 1491 aa19.15■□□□□ 0.66
HDAC3-204ENST00000469207 EID1Q9Y6B2 187 aa19.14■□□□□ 0.65
HDAC3-204ENST00000469207 FAM50AQ14320 339 aaKnown RBP19.13■□□□□ 0.65
HDAC3-204ENST00000469207 KANK1Q14678 1352 aa19.13■□□□□ 0.65
HDAC3-204ENST00000469207 ANKRD30AQ9BXX3 1397 aa19.13■□□□□ 0.65
HDAC3-204ENST00000469207 PIK3C2BO00750 1634 aa19.12■□□□□ 0.65
HDAC3-204ENST00000469207 SLIT1O75093 1534 aa19.12■□□□□ 0.65
HDAC3-204ENST00000469207 MED1Q15648 1581 aaPredicted RBP19.11■□□□□ 0.65
HDAC3-204ENST00000469207 TMEM2Q9UHN6 1383 aa19.11■□□□□ 0.65
HDAC3-204ENST00000469207 RBM33Q96EV2 1170 aaKnown RBP19.11■□□□□ 0.65
HDAC3-204ENST00000469207 SLC26A8Q96RN1 970 aa19.1■□□□□ 0.65
HDAC3-204ENST00000469207 LMTK2Q8IWU2 1503 aa19.05■□□□□ 0.64
HDAC3-204ENST00000469207 SYNMO15061 1565 aa19.05■□□□□ 0.64
HDAC3-204ENST00000469207 PHF23Q9BUL5 403 aaPredicted RBP19.04■□□□□ 0.64
HDAC3-204ENST00000469207 XIRP1Q702N8 1843 aaKnown RBP19.04■□□□□ 0.64
HDAC3-204ENST00000469207 EFCAB6Q5THR3 1501 aa19.04■□□□□ 0.64
HDAC3-204ENST00000469207 NOS1P29475 1434 aa19.03■□□□□ 0.64
HDAC3-204ENST00000469207 BCANQ96GW7 911 aa19.03■□□□□ 0.64
HDAC3-204ENST00000469207 KCNA6P17658 529 aa19.02■□□□□ 0.64
HDAC3-204ENST00000469207 PROSER2Q86WR7 435 aaPredicted RBP19.02■□□□□ 0.64
HDAC3-204ENST00000469207 TMEM94Q12767 1356 aa19.01■□□□□ 0.63
HDAC3-204ENST00000469207 ADGRL2O95490 1459 aa19.01■□□□□ 0.63
HDAC3-204ENST00000469207 ANKRD50Q9ULJ7 1429 aa19■□□□□ 0.63
HDAC3-204ENST00000469207 SLC52A1Q9NWF4 448 aa19■□□□□ 0.63
HDAC3-204ENST00000469207 TET3O43151 1660 aa19■□□□□ 0.63
HDAC3-204ENST00000469207 PPARGC1BQ86YN6 1023 aaKnown RBP18.99■□□□□ 0.63
HDAC3-204ENST00000469207 RGS17Q9UGC6 210 aaPredicted RBP18.98■□□□□ 0.63
HDAC3-204ENST00000469207 NUTM2DQ5VT03 806 aaPredicted RBP18.97■□□□□ 0.63
HDAC3-204ENST00000469207 CHGAP10645 457 aaKnown RBP18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms