RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 DEPDC5O75140 1603 aa10.73□□□□□ -0.69
COL6A3-208ENST00000468792 CCER2I3L3R5 266 aa10.72□□□□□ -0.69
COL6A3-208ENST00000468792 NBPF8Q3BBV2 869 aa10.72□□□□□ -0.69
COL6A3-208ENST00000468792 ARID4BQ4LE39 1312 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-208ENST00000468792 ADGRL1O94910 1474 aa10.72□□□□□ -0.69
COL6A3-208ENST00000468792 EIF2AK4Q9P2K8 1649 aaKnown RBP10.72□□□□□ -0.69
COL6A3-208ENST00000468792 HSPA5P11021 654 aaKnown RBP10.71□□□□□ -0.69
COL6A3-208ENST00000468792 ATP7AQ04656 1500 aa10.71□□□□□ -0.69
COL6A3-208ENST00000468792 STAC3Q96MF2 364 aa10.71□□□□□ -0.69
COL6A3-208ENST00000468792 VWDEQ8N2E2 1590 aa10.7□□□□□ -0.7
COL6A3-208ENST00000468792 PLA2R1Q13018 1463 aa10.7□□□□□ -0.7
COL6A3-208ENST00000468792 ZNF518AQ6AHZ1 1483 aa10.7□□□□□ -0.7
COL6A3-208ENST00000468792 RALGAPBQ86X10 1494 aa10.7□□□□□ -0.7
COL6A3-208ENST00000468792 NEO1Q92859 1461 aa10.7□□□□□ -0.7
COL6A3-208ENST00000468792 SCAPERQ9BY12 1400 aa10.7□□□□□ -0.7
COL6A3-208ENST00000468792 DHX29Q7Z478 1369 aaKnown RBP10.7□□□□□ -0.7
COL6A3-208ENST00000468792 DDX10Q13206 875 aaKnown RBP10.7□□□□□ -0.7
COL6A3-208ENST00000468792 NEURL4Q96JN8 1562 aa10.69□□□□□ -0.7
COL6A3-208ENST00000468792 CCDC144AA2RUR9 1427 aa10.69□□□□□ -0.7
COL6A3-208ENST00000468792 CD109Q6YHK3 1445 aa10.69□□□□□ -0.7
COL6A3-208ENST00000468792 AFAP1Q8N556 730 aa10.69□□□□□ -0.7
COL6A3-208ENST00000468792 KDM5CP41229 1560 aa10.69□□□□□ -0.7
COL6A3-208ENST00000468792 MLH3Q9UHC1 1453 aa10.68□□□□□ -0.7
COL6A3-208ENST00000468792 PTPRTO14522 1441 aa10.68□□□□□ -0.7
COL6A3-208ENST00000468792 POLR1AO95602 1720 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-208ENST00000468792 MAPK8IP2Q13387 824 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-208ENST00000468792 WASHC2AQ641Q2 1341 aa10.67□□□□□ -0.7
COL6A3-208ENST00000468792 GLI2P10070 1586 aa10.67□□□□□ -0.7
COL6A3-208ENST00000468792 ANP32CO43423 234 aa10.66□□□□□ -0.7
COL6A3-208ENST00000468792 PRDM15P57071 1507 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-208ENST00000468792 LMTK2Q8IWU2 1503 aa10.66□□□□□ -0.7
COL6A3-208ENST00000468792 BCORL1Q5H9F3 1711 aa10.66□□□□□ -0.7
COL6A3-208ENST00000468792 TET3O43151 1660 aa10.66□□□□□ -0.7
COL6A3-208ENST00000468792 POGZQ7Z3K3 1410 aa10.66□□□□□ -0.7
COL6A3-208ENST00000468792 KANK1Q14678 1352 aa10.65□□□□□ -0.7
COL6A3-208ENST00000468792 CCDC7Q96M83 1385 aa10.65□□□□□ -0.7
COL6A3-208ENST00000468792 LAMC1P11047 1609 aa10.65□□□□□ -0.7
COL6A3-208ENST00000468792 KIDINS220Q9ULH0 1771 aa10.65□□□□□ -0.71
COL6A3-208ENST00000468792 GPRASP1Q5JY77 1395 aa10.65□□□□□ -0.71
COL6A3-208ENST00000468792 TRPM2O94759 1503 aa10.64□□□□□ -0.71
COL6A3-208ENST00000468792 PRAG1Q86YV5 1406 aa10.64□□□□□ -0.71
COL6A3-208ENST00000468792 RNF17Q9BXT8 1623 aaKnown RBP10.63□□□□□ -0.71
COL6A3-208ENST00000468792 HIRIP3Q9BW71 556 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-208ENST00000468792 CNTLNQ9NXG0 1405 aa10.63□□□□□ -0.71
COL6A3-208ENST00000468792 USP47Q96K76 1375 aa10.63□□□□□ -0.71
COL6A3-208ENST00000468792 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.62□□□□□ -0.71
COL6A3-208ENST00000468792 E9PCH4 1651 aa10.62□□□□□ -0.71
COL6A3-208ENST00000468792 ROCK2O75116 1388 aaKnown RBP10.62□□□□□ -0.71
COL6A3-208ENST00000468792 MROH1Q8NDA8 1641 aa10.62□□□□□ -0.71
COL6A3-208ENST00000468792 MAP3K4Q9Y6R4 1608 aa10.62□□□□□ -0.71
COL6A3-208ENST00000468792 A2MP01023 1474 aa10.61□□□□□ -0.71
COL6A3-208ENST00000468792 HECW2Q9P2P5 1572 aa10.6□□□□□ -0.71
COL6A3-208ENST00000468792 TRPM1Q7Z4N2 1603 aa10.6□□□□□ -0.71
COL6A3-208ENST00000468792 DCAF11Q8TEB1 546 aa10.6□□□□□ -0.71
COL6A3-208ENST00000468792 KIF7Q2M1P5 1343 aa10.59□□□□□ -0.71
COL6A3-208ENST00000468792 SPHKAPQ2M3C7 1700 aa10.59□□□□□ -0.71
COL6A3-208ENST00000468792 C11orf95C9JLR9 678 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-208ENST00000468792 EFCAB6Q5THR3 1501 aa10.58□□□□□ -0.72
COL6A3-208ENST00000468792 RIMBP3CA6NJZ7 1639 aa10.58□□□□□ -0.72
COL6A3-208ENST00000468792 RIMBP3BA6NNM3 1639 aa10.58□□□□□ -0.72
COL6A3-208ENST00000468792 RIMBP3Q9UFD9 1639 aa10.58□□□□□ -0.72
COL6A3-208ENST00000468792 KIF3BO15066 747 aa10.58□□□□□ -0.72
COL6A3-208ENST00000468792 CARD11Q9BXL7 1154 aa10.58□□□□□ -0.72
COL6A3-208ENST00000468792 CEP152O94986 1710 aa10.58□□□□□ -0.72
COL6A3-208ENST00000468792 YTHDC1Q96MU7 727 aaKnown RBP10.57□□□□□ -0.72
COL6A3-208ENST00000468792 FRMPD1Q5SYB0 1578 aa10.56□□□□□ -0.72
COL6A3-208ENST00000468792 RNF216Q9NWF9 866 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-208ENST00000468792 RICTORQ6R327 1708 aa10.55□□□□□ -0.72
COL6A3-208ENST00000468792 KTN1Q86UP2 1357 aaKnown RBP10.54□□□□□ -0.72
COL6A3-208ENST00000468792 ZMYM4Q5VZL5 1548 aa10.54□□□□□ -0.72
COL6A3-208ENST00000468792 ARHGAP31Q2M1Z3 1444 aa10.54□□□□□ -0.72
COL6A3-208ENST00000468792 CYB5RLQ6IPT4 315 aa10.54□□□□□ -0.72
COL6A3-208ENST00000468792 PRKRIP1Q9H875 184 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-208ENST00000468792 KIAA1210Q9ULL0 1709 aa10.54□□□□□ -0.72
COL6A3-208ENST00000468792 CLTCL1P53675 1640 aa10.54□□□□□ -0.72
COL6A3-208ENST00000468792 ABCA6Q8N139 1617 aa10.54□□□□□ -0.72
COL6A3-208ENST00000468792 DIP2BQ9P265 1576 aa10.53□□□□□ -0.72
COL6A3-208ENST00000468792 SLC24A1O60721 1099 aa10.53□□□□□ -0.72
COL6A3-208ENST00000468792 KDM2AQ9Y2K7 1162 aa10.53□□□□□ -0.72
COL6A3-208ENST00000468792 GTF3C3Q9Y5Q9 886 aa10.53□□□□□ -0.72
COL6A3-208ENST00000468792 MYOM2P54296 1465 aa10.53□□□□□ -0.72
COL6A3-208ENST00000468792 DIP2CQ9Y2E4 1556 aa10.52□□□□□ -0.72
COL6A3-208ENST00000468792 MADDQ8WXG6 1647 aa10.52□□□□□ -0.73
COL6A3-208ENST00000468792 ST20-MTHFSA0A0A6YYL1 179 aa10.52□□□□□ -0.73
COL6A3-208ENST00000468792 ZNF326Q5BKZ1 582 aaKnown RBP10.52□□□□□ -0.73
COL6A3-208ENST00000468792 MYT1LQ9UL68 1186 aa10.52□□□□□ -0.73
COL6A3-208ENST00000468792 PPRC1Q5VV67 1664 aaKnown RBP10.52□□□□□ -0.73
COL6A3-208ENST00000468792 REREQ9P2R6 1566 aa10.52□□□□□ -0.73
COL6A3-208ENST00000468792 ZC3H13Q5T200 1668 aaKnown RBP10.51□□□□□ -0.73
COL6A3-208ENST00000468792 RGL3Q3MIN7 710 aa10.51□□□□□ -0.73
COL6A3-208ENST00000468792 ABCC3O15438 1527 aa10.51□□□□□ -0.73
COL6A3-208ENST00000468792 WASHC2CQ9Y4E1 1318 aa10.51□□□□□ -0.73
COL6A3-208ENST00000468792 NRXN1Q9ULB1 1477 aa10.5□□□□□ -0.73
COL6A3-208ENST00000468792 RPGRIP1LQ68CZ1 1315 aa10.5□□□□□ -0.73
COL6A3-208ENST00000468792 NOS1P29475 1434 aa10.5□□□□□ -0.73
COL6A3-208ENST00000468792 NPATQ14207 1427 aa10.5□□□□□ -0.73
COL6A3-208ENST00000468792 KIF1BO60333 1816 aa10.49□□□□□ -0.73
COL6A3-208ENST00000468792 TESK2Q96S53 571 aa10.49□□□□□ -0.73
COL6A3-208ENST00000468792 COL17A1Q9UMD9 1497 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-208ENST00000468792 ADGRB3O60242 1522 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms