RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 RNF17Q9BXT8 1623 aaKnown RBP33.38■■■□□ 2.93
SHANK1-206ENST00000468654 KANK4Q5T7N3 995 aaPredicted RBP33.37■■■□□ 2.93
SHANK1-206ENST00000468654 TCOF1Q13428 1488 aaKnown RBP33.36■■■□□ 2.93
SHANK1-206ENST00000468654 PPP6R1Q9UPN7 881 aa33.35■■■□□ 2.93
SHANK1-206ENST00000468654 CROCC2H7BZ55 1655 aa33.33■■■□□ 2.93
SHANK1-206ENST00000468654 ZC3H13Q5T200 1668 aaKnown RBP33.33■■■□□ 2.93
SHANK1-206ENST00000468654 EIF2AK4Q9P2K8 1649 aaKnown RBP33.31■■■□□ 2.92
SHANK1-206ENST00000468654 A2ML1A8K2U0 1454 aa33.31■■■□□ 2.92
SHANK1-206ENST00000468654 IQSEC2Q5JU85 1478 aa33.31■■■□□ 2.92
SHANK1-206ENST00000468654 PZPP20742 1482 aa33.31■■■□□ 2.92
SHANK1-206ENST00000468654 MYOM3Q5VTT5 1437 aa33.3■■■□□ 2.92
SHANK1-206ENST00000468654 MIA2Q96PC5 1412 aa33.29■■■□□ 2.92
SHANK1-206ENST00000468654 CEP152O94986 1710 aa33.27■■■□□ 2.92
SHANK1-206ENST00000468654 NEURL4Q96JN8 1562 aa33.26■■■□□ 2.92
SHANK1-206ENST00000468654 MROH1Q8NDA8 1641 aa33.25■■■□□ 2.91
SHANK1-206ENST00000468654 TSPY4P0CV99 314 aa33.24■■■□□ 2.91
SHANK1-206ENST00000468654 TSPY10P0CW01 314 aa33.24■■■□□ 2.91
SHANK1-206ENST00000468654 NCKAP5LQ9HCH0 1330 aa33.24■■■□□ 2.91
SHANK1-206ENST00000468654 KIF3BO15066 747 aa33.23■■■□□ 2.91
SHANK1-206ENST00000468654 TNRQ92752 1358 aa33.19■■■□□ 2.9
SHANK1-206ENST00000468654 ABCC3O15438 1527 aa33.18■■■□□ 2.9
SHANK1-206ENST00000468654 CFAP65Q6ZU64 1925 aaKnown RBP33.17■■■□□ 2.9
SHANK1-206ENST00000468654 PKD2Q13563 968 aa33.15■■■□□ 2.9
SHANK1-206ENST00000468654 ZNF335Q9H4Z2 1342 aaPredicted RBP33.15■■■□□ 2.9
SHANK1-206ENST00000468654 APLP2Q06481 763 aa33.14■■■□□ 2.9
SHANK1-206ENST00000468654 PTPN23Q9H3S7 1636 aa33.13■■■□□ 2.89
SHANK1-206ENST00000468654 SPATA31D1Q6ZQQ2 1576 aa33.12■■■□□ 2.89
SHANK1-206ENST00000468654 FBXO31Q5XUX0 539 aaPredicted RBP33.11■■■□□ 2.89
SHANK1-206ENST00000468654 NLRP1Q9C000 1473 aa33.1■■■□□ 2.89
SHANK1-206ENST00000468654 DEPDC5O75140 1603 aa33.1■■■□□ 2.89
SHANK1-206ENST00000468654 WASHC2CQ9Y4E1 1318 aa33.08■■■□□ 2.89
SHANK1-206ENST00000468654 SHANK2Q9UPX8 1470 aa33.08■■■□□ 2.89
SHANK1-206ENST00000468654 UGGT1Q9NYU2 1555 aa33.08■■■□□ 2.89
SHANK1-206ENST00000468654 DUOX2Q9NRD8 1548 aa33.07■■■□□ 2.89
SHANK1-206ENST00000468654 PRDM15P57071 1507 aaPredicted RBP33.07■■■□□ 2.88
SHANK1-206ENST00000468654 IQGAP1P46940 1657 aa33.05■■■□□ 2.88
SHANK1-206ENST00000468654 FGD6Q6ZV73 1430 aa33.04■■■□□ 2.88
SHANK1-206ENST00000468654 UBR1Q8IWV7 1749 aa33.04■■■□□ 2.88
SHANK1-206ENST00000468654 ABCC5O15440 1437 aa33.03■■■□□ 2.88
SHANK1-206ENST00000468654 ERVK-7P63135 1459 aa33.03■■■□□ 2.88
SHANK1-206ENST00000468654 VWDEQ8N2E2 1590 aa33.01■■■□□ 2.88
SHANK1-206ENST00000468654 STRCP1A6NGW2 1772 aa32.98■■■□□ 2.87
SHANK1-206ENST00000468654 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.97■■■□□ 2.87
SHANK1-206ENST00000468654 KIF15Q9NS87 1388 aa32.97■■■□□ 2.87
SHANK1-206ENST00000468654 DAPK1P53355 1430 aa32.97■■■□□ 2.87
SHANK1-206ENST00000468654 CPS1P31327 1500 aa32.97■■■□□ 2.87
SHANK1-206ENST00000468654 MED14O60244 1454 aa32.95■■■□□ 2.87
SHANK1-206ENST00000468654 ERBINQ96RT1 1412 aa32.94■■■□□ 2.86
SHANK1-206ENST00000468654 DISP3Q9P2K9 1392 aa32.9■■■□□ 2.86
SHANK1-206ENST00000468654 NPHP4O75161 1426 aaPredicted RBP32.88■■■□□ 2.85
SHANK1-206ENST00000468654 SYNMO15061 1565 aa32.86■■■□□ 2.85
SHANK1-206ENST00000468654 PIK3C2BO00750 1634 aa32.85■■■□□ 2.85
SHANK1-206ENST00000468654 RRP7BPQ9NSQ0 103 aa32.85■■■□□ 2.85
SHANK1-206ENST00000468654 UBAP1LF5GYI3 381 aa32.84■■■□□ 2.85
SHANK1-206ENST00000468654 ALKQ9UM73 1620 aa32.82■■■□□ 2.84
SHANK1-206ENST00000468654 THEMISQ8N1K5 641 aaPredicted RBP32.82■■■□□ 2.84
SHANK1-206ENST00000468654 ARHGAP31Q2M1Z3 1444 aa32.82■■■□□ 2.84
SHANK1-206ENST00000468654 ANKLE2Q86XL3 938 aa32.81■■■□□ 2.84
SHANK1-206ENST00000468654 ANKRD30AQ9BXX3 1397 aa32.81■■■□□ 2.84
SHANK1-206ENST00000468654 KDM5AP29375 1690 aaKnown RBP32.8■■■□□ 2.84
SHANK1-206ENST00000468654 ADGRL2O95490 1459 aa32.78■■■□□ 2.84
SHANK1-206ENST00000468654 SLIT1O75093 1534 aa32.77■■■□□ 2.84
SHANK1-206ENST00000468654 XIRP1Q702N8 1843 aaKnown RBP32.77■■■□□ 2.84
SHANK1-206ENST00000468654 LMTK2Q8IWU2 1503 aa32.77■■■□□ 2.84
SHANK1-206ENST00000468654 ARHGAP23Q9P227 1491 aa32.76■■■□□ 2.84
SHANK1-206ENST00000468654 ILDR2Q71H61 639 aa32.75■■■□□ 2.83
SHANK1-206ENST00000468654 CHIC2Q9UKJ5 165 aa32.75■■■□□ 2.83
SHANK1-206ENST00000468654 SCAF11Q99590 1463 aaKnown RBP32.74■■■□□ 2.83
SHANK1-206ENST00000468654 EFCAB6Q5THR3 1501 aa32.74■■■□□ 2.83
SHANK1-206ENST00000468654 KANK1Q14678 1352 aa32.7■■■□□ 2.82
SHANK1-206ENST00000468654 MYO5BQ9ULV0 1848 aa32.69■■■□□ 2.82
SHANK1-206ENST00000468654 FAM50AQ14320 339 aaKnown RBP32.68■■■□□ 2.82
SHANK1-206ENST00000468654 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.68■■■□□ 2.82
SHANK1-206ENST00000468654 LRRC7Q96NW7 1537 aa32.67■■■□□ 2.82
SHANK1-206ENST00000468654 MED1Q15648 1581 aaPredicted RBP32.63■■■□□ 2.81
SHANK1-206ENST00000468654 GCC2Q8IWJ2 1684 aa32.62■■■□□ 2.81
SHANK1-206ENST00000468654 TET3O43151 1660 aa32.62■■■□□ 2.81
SHANK1-206ENST00000468654 ADGRB3O60242 1522 aa32.61■■■□□ 2.81
SHANK1-206ENST00000468654 ANKRD50Q9ULJ7 1429 aa32.59■■■□□ 2.81
SHANK1-206ENST00000468654 UNC13BO14795 1591 aa32.58■■■□□ 2.81
SHANK1-206ENST00000468654 SCAF1Q9H7N4 1312 aaKnown RBP32.58■■■□□ 2.81
SHANK1-206ENST00000468654 PIP4K2BP78356 416 aa32.57■■■□□ 2.8
SHANK1-206ENST00000468654 NOS1P29475 1434 aa32.55■■■□□ 2.8
SHANK1-206ENST00000468654 TOM1O60784 492 aa32.55■■■□□ 2.8
SHANK1-206ENST00000468654 LTKP29376 864 aa32.55■■■□□ 2.8
SHANK1-206ENST00000468654 HSPA1LP34931 641 aa32.54■■■□□ 2.8
SHANK1-206ENST00000468654 TMEM2Q9UHN6 1383 aa32.53■■■□□ 2.8
SHANK1-206ENST00000468654 SOCS7O14512 581 aa32.49■■■□□ 2.79
SHANK1-206ENST00000468654 RPRD2Q5VT52 1461 aaKnown RBP32.48■■■□□ 2.79
SHANK1-206ENST00000468654 E9PCH4 1651 aa32.48■■■□□ 2.79
SHANK1-206ENST00000468654 ROCK1Q13464 1354 aa32.47■■■□□ 2.79
SHANK1-206ENST00000468654 NWD1Q149M9 1564 aa32.46■■■□□ 2.79
SHANK1-206ENST00000468654 TXNDC2Q86VQ3 553 aa32.46■■■□□ 2.79
SHANK1-206ENST00000468654 IQGAP3Q86VI3 1631 aa32.44■■■□□ 2.78
SHANK1-206ENST00000468654 TMEM131LA2VDJ0 1609 aa32.43■■■□□ 2.78
SHANK1-206ENST00000468654 IDI1Q13907 227 aa32.42■■■□□ 2.78
SHANK1-206ENST00000468654 EID1Q9Y6B2 187 aa32.4■■■□□ 2.78
SHANK1-206ENST00000468654 STAG3Q9UJ98 1225 aa32.39■■■□□ 2.78
SHANK1-206ENST00000468654 CHD2O14647 1828 aaKnown RBP32.37■■■□□ 2.77
SHANK1-206ENST00000468654 SLC52A1Q9NWF4 448 aa32.36■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms