RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 MAP3K7O43318 606 aa8.18□□□□□ -1.1
VPS13A-209ENST00000467124 AMHR2Q16671 573 aa8.18□□□□□ -1.1
VPS13A-209ENST00000467124 CCDC102AQ96A19 550 aa8.18□□□□□ -1.1
VPS13A-209ENST00000467124 SNPHO15079 494 aa8.17□□□□□ -1.1
VPS13A-209ENST00000467124 POTEJP0CG39 1038 aa8.17□□□□□ -1.1
VPS13A-209ENST00000467124 HOXB3P14651 431 aaPredicted RBP8.17□□□□□ -1.1
VPS13A-209ENST00000467124 FOSBP53539 338 aa8.17□□□□□ -1.1
VPS13A-209ENST00000467124 FAM117AQ9C073 453 aa8.16□□□□□ -1.1
VPS13A-209ENST00000467124 RBM27Q9P2N5 1060 aaKnown RBP8.16□□□□□ -1.1
VPS13A-209ENST00000467124 ZNF710Q8N1W2 664 aa8.15□□□□□ -1.1
VPS13A-209ENST00000467124 POTEB2H3BUK9 544 aa8.14□□□□□ -1.11
VPS13A-209ENST00000467124 ZDHHC16Q969W1 377 aa8.14□□□□□ -1.11
VPS13A-209ENST00000467124 GPR153Q6NV75 609 aa8.13□□□□□ -1.11
VPS13A-209ENST00000467124 CDHR5Q9HBB8 845 aa8.13□□□□□ -1.11
VPS13A-209ENST00000467124 ZNF454Q8N9F8 522 aa8.12□□□□□ -1.11
VPS13A-209ENST00000467124 RBM33Q96EV2 1170 aaKnown RBP8.12□□□□□ -1.11
VPS13A-209ENST00000467124 NPDC1Q9NQX5 325 aaPredicted RBP8.12□□□□□ -1.11
VPS13A-209ENST00000467124 NUDT7P0C024 238 aa8.11□□□□□ -1.11
VPS13A-209ENST00000467124 PARP9Q8IXQ6 854 aa8.11□□□□□ -1.11
VPS13A-209ENST00000467124 TSR1Q2NL82 804 aaKnown RBP8.1□□□□□ -1.11
VPS13A-209ENST00000467124 ARSIQ5FYB1 569 aa8.1□□□□□ -1.11
VPS13A-209ENST00000467124 PPP4R3BQ5MIZ7 849 aa8.1□□□□□ -1.11
VPS13A-209ENST00000467124 C6orf132Q5T0Z8 1188 aa8.1□□□□□ -1.11
VPS13A-209ENST00000467124 DDRGK1Q96HY6 314 aa8.1□□□□□ -1.11
VPS13A-209ENST00000467124 TTLL12Q14166 644 aaPredicted RBP8.09□□□□□ -1.11
VPS13A-209ENST00000467124 PLEKHG3A1L390 1219 aa8.08□□□□□ -1.12
VPS13A-209ENST00000467124 OATP04181 439 aa8.07□□□□□ -1.12
VPS13A-209ENST00000467124 HOXB1P14653 301 aaPredicted RBP8.07□□□□□ -1.12
VPS13A-209ENST00000467124 CLCN1P35523 988 aa8.07□□□□□ -1.12
VPS13A-209ENST00000467124 BCL2L12Q9HB09 334 aa8.07□□□□□ -1.12
VPS13A-209ENST00000467124 PCDH10Q9P2E7 1040 aa8.07□□□□□ -1.12
VPS13A-209ENST00000467124 TTC13Q8NBP0 860 aa8.06□□□□□ -1.12
VPS13A-209ENST00000467124 ADAM33Q9BZ11 813 aa8.06□□□□□ -1.12
VPS13A-209ENST00000467124 FAM161AQ3B820 660 aa8.05□□□□□ -1.12
VPS13A-209ENST00000467124 LHX6Q9UPM6 363 aa8.05□□□□□ -1.12
VPS13A-209ENST00000467124 PPP1R3GB7ZBB8 358 aa8.04□□□□□ -1.12
VPS13A-209ENST00000467124 NLRP7Q8WX94 980 aa8.04□□□□□ -1.12
VPS13A-209ENST00000467124 KHSRPQ92945 711 aaKnown RBP eCLIP8.04□□□□□ -1.12
VPS13A-209ENST00000467124 REPIN1Q9BWE0 567 aaKnown RBP8.04□□□□□ -1.12
VPS13A-209ENST00000467124 GPCPD1Q9NPB8 672 aa8.04□□□□□ -1.12
VPS13A-209ENST00000467124 PRSS12P56730 875 aa8.03□□□□□ -1.12
VPS13A-209ENST00000467124 PADI6Q6TGC4 694 aa8.03□□□□□ -1.12
VPS13A-209ENST00000467124 GIGYF2Q6Y7W6 1299 aaKnown RBP8.03□□□□□ -1.12
VPS13A-209ENST00000467124 METTL3Q86U44 580 aaKnown RBP8.03□□□□□ -1.12
VPS13A-209ENST00000467124 GOPCQ9HD26 462 aa8.03□□□□□ -1.12
VPS13A-209ENST00000467124 POTEMA6NI47 508 aa8.02□□□□□ -1.13
VPS13A-209ENST00000467124 MS4A1P11836 297 aa8.02□□□□□ -1.13
VPS13A-209ENST00000467124 PTPREP23469 700 aa8.02□□□□□ -1.13
VPS13A-209ENST00000467124 KCNH8Q96L42 1107 aa8.02□□□□□ -1.13
VPS13A-209ENST00000467124 TMUB1Q9BVT8 246 aa8.02□□□□□ -1.13
VPS13A-209ENST00000467124 ADGRG1Q9Y653 693 aa8.02□□□□□ -1.13
VPS13A-209ENST00000467124 MDM2Q00987 491 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-209ENST00000467124 RBM46Q8TBY0 533 aaKnown RBP8.01□□□□□ -1.13
VPS13A-209ENST00000467124 CDCA7LQ96GN5 454 aa8.01□□□□□ -1.13
VPS13A-209ENST00000467124 PXYLP1Q8TE99 480 aa8□□□□□ -1.13
VPS13A-209ENST00000467124 ARXQ96QS3 562 aa8□□□□□ -1.13
VPS13A-209ENST00000467124 PHOX2BQ99453 314 aa8□□□□□ -1.13
VPS13A-209ENST00000467124 ONECUT3O60422 494 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-209ENST00000467124 OTUD5Q96G74 571 aa7.99□□□□□ -1.13
VPS13A-209ENST00000467124 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.98□□□□□ -1.13
VPS13A-209ENST00000467124 NBPF26B4DH59 902 aa7.98□□□□□ -1.13
VPS13A-209ENST00000467124 ZMYND15Q9H091 742 aa7.97□□□□□ -1.13
VPS13A-209ENST00000467124 ATP1B4Q9UN42 357 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-209ENST00000467124 TRIM6-TRIM34B2RNG4 842 aa7.95□□□□□ -1.14
VPS13A-209ENST00000467124 COL9A1P20849 921 aa7.95□□□□□ -1.14
VPS13A-209ENST00000467124 POTEGQ6S5H5 508 aa7.95□□□□□ -1.14
VPS13A-209ENST00000467124 HOMEZQ8IX15 550 aa7.95□□□□□ -1.14
VPS13A-209ENST00000467124 FAM217BQ9NTX9 383 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-209ENST00000467124 PBX2P40425 430 aa7.94□□□□□ -1.14
VPS13A-209ENST00000467124 PACS2Q86VP3 889 aa7.94□□□□□ -1.14
VPS13A-209ENST00000467124 ARID3AQ99856 593 aa7.94□□□□□ -1.14
VPS13A-209ENST00000467124 RSPH6AQ9H0K4 717 aa7.94□□□□□ -1.14
VPS13A-209ENST00000467124 DIXDC1Q155Q3 683 aa7.93□□□□□ -1.14
VPS13A-209ENST00000467124 SH3D19Q5HYK7 790 aa7.93□□□□□ -1.14
VPS13A-209ENST00000467124 DNAJB2P25686 324 aa7.92□□□□□ -1.14
VPS13A-209ENST00000467124 SSTR3P32745 418 aaPredicted RBP7.92□□□□□ -1.14
VPS13A-209ENST00000467124 SULF1Q8IWU6 871 aa7.92□□□□□ -1.14
VPS13A-209ENST00000467124 PCMTD1Q96MG8 357 aaPredicted RBP7.92□□□□□ -1.14
VPS13A-209ENST00000467124 KCNK17Q96T54 332 aa7.92□□□□□ -1.14
VPS13A-209ENST00000467124 EYA1Q99502 592 aa7.92□□□□□ -1.14
VPS13A-209ENST00000467124 SLC4A5Q9BY07 1137 aa7.92□□□□□ -1.14
VPS13A-209ENST00000467124 TSKSQ9UJT2 592 aa7.92□□□□□ -1.14
VPS13A-209ENST00000467124 ARID3CA6NKF2 412 aa7.91□□□□□ -1.14
VPS13A-209ENST00000467124 BEGAINQ9BUH8 593 aa7.91□□□□□ -1.14
VPS13A-209ENST00000467124 FAM198AQ9UFP1 575 aa7.91□□□□□ -1.14
VPS13A-209ENST00000467124 ERBB3P21860 1342 aa7.9□□□□□ -1.14
VPS13A-209ENST00000467124 RCCD1A6NED2 376 aa7.9□□□□□ -1.14
VPS13A-209ENST00000467124 POLR3EQ9NVU0 708 aa7.9□□□□□ -1.14
VPS13A-209ENST00000467124 ARHGAP33O14559 1287 aa7.89□□□□□ -1.15
VPS13A-209ENST00000467124 PROCA1Q8NCQ7 364 aaPredicted RBP7.89□□□□□ -1.15
VPS13A-209ENST00000467124 TATDN2Q93075 761 aa7.89□□□□□ -1.15
VPS13A-209ENST00000467124 ZBED2Q9BTP6 218 aa7.89□□□□□ -1.15
VPS13A-209ENST00000467124 TMEM134Q9H6X4 195 aa7.89□□□□□ -1.15
VPS13A-209ENST00000467124 VARS2Q5ST30 1063 aaKnown RBP7.88□□□□□ -1.15
VPS13A-209ENST00000467124 NUDT18Q6ZVK8 323 aa7.88□□□□□ -1.15
VPS13A-209ENST00000467124 PNMA3Q9UL41 463 aa7.88□□□□□ -1.15
VPS13A-209ENST00000467124 EMP3P54852 163 aa7.87□□□□□ -1.15
VPS13A-209ENST00000467124 SKIV2LQ15477 1246 aaKnown RBP7.87□□□□□ -1.15
VPS13A-209ENST00000467124 CLUAP1Q96AJ1 413 aa7.87□□□□□ -1.15
VPS13A-209ENST00000467124 C1orf115Q9H7X2 142 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms