RNA–Protein interactions for RNA: ENST00000466411.1

CLDN4-204, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-204ENST00000466411 CLTCQ00610 1675 aaKnown RBP11.15□□□□□ -0.62
CLDN4-204ENST00000466411 CDK13Q14004 1512 aaKnown RBP11.14□□□□□ -0.63
CLDN4-204ENST00000466411 FAM135BQ49AJ0 1406 aa11.14□□□□□ -0.63
CLDN4-204ENST00000466411 MYT1LQ9UL68 1186 aa11.13□□□□□ -0.63
CLDN4-204ENST00000466411 XIRP1Q702N8 1843 aaKnown RBP11.12□□□□□ -0.63
CLDN4-204ENST00000466411 FMN1Q68DA7 1419 aa11.11□□□□□ -0.63
CLDN4-204ENST00000466411 KIF14Q15058 1648 aa11.11□□□□□ -0.63
CLDN4-204ENST00000466411 CDC42BPBQ9Y5S2 1711 aa11.11□□□□□ -0.63
CLDN4-204ENST00000466411 DEPDC5O75140 1603 aa11.1□□□□□ -0.63
CLDN4-204ENST00000466411 ANKLE2Q86XL3 938 aa11.1□□□□□ -0.63
CLDN4-204ENST00000466411 NPHP4O75161 1426 aaPredicted RBP11.09□□□□□ -0.63
CLDN4-204ENST00000466411 ARHGAP5Q13017 1502 aa11.09□□□□□ -0.63
CLDN4-204ENST00000466411 SYNMO15061 1565 aa11.09□□□□□ -0.63
CLDN4-204ENST00000466411 ABCC1P33527 1531 aa11.09□□□□□ -0.63
CLDN4-204ENST00000466411 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.08□□□□□ -0.64
CLDN4-204ENST00000466411 ITSN2Q9NZM3 1697 aa11.08□□□□□ -0.64
CLDN4-204ENST00000466411 PLXNC1O60486 1568 aa11.07□□□□□ -0.64
CLDN4-204ENST00000466411 CLIP1P30622 1438 aa11.07□□□□□ -0.64
CLDN4-204ENST00000466411 IQGAP1P46940 1657 aa11.06□□□□□ -0.64
CLDN4-204ENST00000466411 ARHGAP35Q9NRY4 1499 aa11.06□□□□□ -0.64
CLDN4-204ENST00000466411 FBXO31Q5XUX0 539 aaPredicted RBP11.05□□□□□ -0.64
CLDN4-204ENST00000466411 SAMD9LQ8IVG5 1584 aa11.04□□□□□ -0.64
CLDN4-204ENST00000466411 CEP162Q5TB80 1403 aa11.04□□□□□ -0.64
CLDN4-204ENST00000466411 TRIM52Q96A61 297 aa11.04□□□□□ -0.64
CLDN4-204ENST00000466411 THEMISQ8N1K5 641 aaPredicted RBP11.03□□□□□ -0.64
CLDN4-204ENST00000466411 ZC3H13Q5T200 1668 aaKnown RBP11.03□□□□□ -0.64
CLDN4-204ENST00000466411 TNRQ92752 1358 aa11.03□□□□□ -0.64
CLDN4-204ENST00000466411 FYCO1Q9BQS8 1478 aa11.02□□□□□ -0.65
CLDN4-204ENST00000466411 CDK12Q9NYV4 1490 aaPredicted RBP11.02□□□□□ -0.65
CLDN4-204ENST00000466411 GGT6Q6P531 493 aa11.02□□□□□ -0.65
CLDN4-204ENST00000466411 ROBO1Q9Y6N7 1651 aa11.01□□□□□ -0.65
CLDN4-204ENST00000466411 TROQ12816 1431 aaPredicted RBP11.01□□□□□ -0.65
CLDN4-204ENST00000466411 CCDC18Q5T9S5 1454 aa11.01□□□□□ -0.65
CLDN4-204ENST00000466411 RNF39Q9H2S5 420 aa11.01□□□□□ -0.65
CLDN4-204ENST00000466411 LRP6O75581 1613 aa11.01□□□□□ -0.65
CLDN4-204ENST00000466411 SETBP1Q9Y6X0 1596 aa11□□□□□ -0.65
CLDN4-204ENST00000466411 PREX2Q70Z35 1606 aa11□□□□□ -0.65
CLDN4-204ENST00000466411 A2MP01023 1474 aa11□□□□□ -0.65
CLDN4-204ENST00000466411 ZNF772Q68DY9 489 aaPredicted RBP10.99□□□□□ -0.65
CLDN4-204ENST00000466411 JCADQ9P266 1359 aa10.99□□□□□ -0.65
CLDN4-204ENST00000466411 CASKIN1Q8WXD9 1431 aa10.99□□□□□ -0.65
CLDN4-204ENST00000466411 MIA2Q96PC5 1412 aa10.99□□□□□ -0.65
CLDN4-204ENST00000466411 UGGT1Q9NYU2 1555 aa10.99□□□□□ -0.65
CLDN4-204ENST00000466411 RXRBP28702 533 aa10.98□□□□□ -0.65
CLDN4-204ENST00000466411 PZPP20742 1482 aa10.98□□□□□ -0.65
CLDN4-204ENST00000466411 RANGAP1P46060 587 aaPredicted RBP10.97□□□□□ -0.65
CLDN4-204ENST00000466411 CDK11AQ9UQ88 783 aaPredicted RBP10.97□□□□□ -0.65
CLDN4-204ENST00000466411 SPAG9O60271 1321 aaKnown RBP10.97□□□□□ -0.65
CLDN4-204ENST00000466411 NLRP1Q9C000 1473 aa10.97□□□□□ -0.65
CLDN4-204ENST00000466411 ATP7AQ04656 1500 aa10.96□□□□□ -0.65
CLDN4-204ENST00000466411 KDM5DQ9BY66 1539 aa10.96□□□□□ -0.65
CLDN4-204ENST00000466411 FAM135AQ9P2D6 1515 aa10.96□□□□□ -0.65
CLDN4-204ENST00000466411 APLP2Q06481 763 aa10.96□□□□□ -0.65
CLDN4-204ENST00000466411 INO80Q9ULG1 1556 aaPredicted RBP10.95□□□□□ -0.66
CLDN4-204ENST00000466411 PHLPP1O60346 1717 aa10.94□□□□□ -0.66
CLDN4-204ENST00000466411 CDC42BPAQ5VT25 1732 aa10.94□□□□□ -0.66
CLDN4-204ENST00000466411 COL16A1Q07092 1604 aaPredicted RBP10.94□□□□□ -0.66
CLDN4-204ENST00000466411 MAP3K1Q13233 1512 aa10.94□□□□□ -0.66
CLDN4-204ENST00000466411 VPS8Q8N3P4 1428 aa10.93□□□□□ -0.66
CLDN4-204ENST00000466411 LRRIQ1Q96JM4 1722 aa10.93□□□□□ -0.66
CLDN4-204ENST00000466411 HNRNPMP52272 730 aaKnown RBP eCLIP10.93□□□□□ -0.66
CLDN4-204ENST00000466411 ZRANB1Q9UGI0 708 aa10.93□□□□□ -0.66
CLDN4-204ENST00000466411 TMEM94Q12767 1356 aa10.92□□□□□ -0.66
CLDN4-204ENST00000466411 SPATA31A6Q5VVP1 1343 aa10.92□□□□□ -0.66
CLDN4-204ENST00000466411 LTKP29376 864 aa10.92□□□□□ -0.66
CLDN4-204ENST00000466411 SYCP2Q9BX26 1530 aa10.92□□□□□ -0.66
CLDN4-204ENST00000466411 LOC105371045A0A1W2PR82 267 aa10.91□□□□□ -0.66
CLDN4-204ENST00000466411 ZNF219Q9P2Y4 722 aaPredicted RBP10.91□□□□□ -0.66
CLDN4-204ENST00000466411 RGS12O14924 1447 aa10.91□□□□□ -0.66
CLDN4-204ENST00000466411 FGD6Q6ZV73 1430 aa10.91□□□□□ -0.66
CLDN4-204ENST00000466411 SPINK5Q9NQ38 1064 aaPredicted RBP10.9□□□□□ -0.66
CLDN4-204ENST00000466411 ADGBQ8N7X0 1667 aa10.89□□□□□ -0.67
CLDN4-204ENST00000466411 KIAA1107Q9UPP5 1409 aa10.89□□□□□ -0.67
CLDN4-204ENST00000466411 LRRC9Q6ZRR7 1453 aa10.88□□□□□ -0.67
CLDN4-204ENST00000466411 ARHGAP23Q9P227 1491 aa10.88□□□□□ -0.67
CLDN4-204ENST00000466411 EP400Q96L91 3159 aa10.88□□□□□ -0.67
CLDN4-204ENST00000466411 SLAIN2Q9P270 581 aa10.88□□□□□ -0.67
CLDN4-204ENST00000466411 NCOA2Q15596 1464 aa10.87□□□□□ -0.67
CLDN4-204ENST00000466411 SCAF11Q99590 1463 aaKnown RBP10.87□□□□□ -0.67
CLDN4-204ENST00000466411 RBM33Q96EV2 1170 aaKnown RBP10.87□□□□□ -0.67
CLDN4-204ENST00000466411 EHBP1L1Q8N3D4 1523 aa10.87□□□□□ -0.67
CLDN4-204ENST00000466411 DHX29Q7Z478 1369 aaKnown RBP10.87□□□□□ -0.67
CLDN4-204ENST00000466411 SHPRHQ149N8 1683 aa10.86□□□□□ -0.67
CLDN4-204ENST00000466411 C1QBPQ07021 282 aaKnown RBP10.86□□□□□ -0.67
CLDN4-204ENST00000466411 IFFO2Q5TF58 517 aa10.86□□□□□ -0.67
CLDN4-204ENST00000466411 ATP1B4Q9UN42 357 aaPredicted RBP10.86□□□□□ -0.67
CLDN4-204ENST00000466411 UBR1Q8IWV7 1749 aa10.86□□□□□ -0.67
CLDN4-204ENST00000466411 TIAM1Q13009 1591 aa10.86□□□□□ -0.67
CLDN4-204ENST00000466411 SLIT1O75093 1534 aa10.85□□□□□ -0.67
CLDN4-204ENST00000466411 GPATCH8Q9UKJ3 1502 aaKnown RBP10.85□□□□□ -0.67
CLDN4-204ENST00000466411 KCNA6P17658 529 aa10.85□□□□□ -0.67
CLDN4-204ENST00000466411 MEX3CQ5U5Q3 659 aaKnown RBP10.85□□□□□ -0.67
CLDN4-204ENST00000466411 AFF2P51816 1311 aa10.84□□□□□ -0.67
CLDN4-204ENST00000466411 LRP5O75197 1615 aa10.84□□□□□ -0.67
CLDN4-204ENST00000466411 RBM6P78332 1123 aaKnown RBP10.84□□□□□ -0.67
CLDN4-204ENST00000466411 FKBP8Q14318 412 aa10.84□□□□□ -0.67
CLDN4-204ENST00000466411 ZNF777Q9ULD5 760 aaPredicted RBP10.84□□□□□ -0.67
CLDN4-204ENST00000466411 PRDM15P57071 1507 aaPredicted RBP10.84□□□□□ -0.67
CLDN4-204ENST00000466411 TXNDC2Q86VQ3 553 aa10.83□□□□□ -0.68
CLDN4-204ENST00000466411 WASHC2CQ9Y4E1 1318 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms