RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 A2ML1A8K2U0 1454 aa32.87■■■□□ 2.85
COL6A1-203ENST00000466285 RNF17Q9BXT8 1623 aaKnown RBP32.87■■■□□ 2.85
COL6A1-203ENST00000466285 PZPP20742 1482 aa32.86■■■□□ 2.85
COL6A1-203ENST00000466285 FBXO31Q5XUX0 539 aaPredicted RBP32.86■■■□□ 2.85
COL6A1-203ENST00000466285 POLR1AO95602 1720 aaPredicted RBP32.85■■■□□ 2.85
COL6A1-203ENST00000466285 NEURL4Q96JN8 1562 aa32.84■■■□□ 2.85
COL6A1-203ENST00000466285 ZNF335Q9H4Z2 1342 aaPredicted RBP32.84■■■□□ 2.85
COL6A1-203ENST00000466285 MAP3K1Q13233 1512 aa32.84■■■□□ 2.85
COL6A1-203ENST00000466285 FAM135AQ9P2D6 1515 aa32.84■■■□□ 2.85
COL6A1-203ENST00000466285 MROH1Q8NDA8 1641 aa32.84■■■□□ 2.85
COL6A1-203ENST00000466285 PPP6R1Q9UPN7 881 aa32.83■■■□□ 2.85
COL6A1-203ENST00000466285 MYOM3Q5VTT5 1437 aa32.8■■■□□ 2.84
COL6A1-203ENST00000466285 TNRQ92752 1358 aa32.8■■■□□ 2.84
COL6A1-203ENST00000466285 CROCC2H7BZ55 1655 aa32.78■■■□□ 2.84
COL6A1-203ENST00000466285 CEP152O94986 1710 aa32.78■■■□□ 2.84
COL6A1-203ENST00000466285 IQSEC2Q5JU85 1478 aa32.78■■■□□ 2.84
COL6A1-203ENST00000466285 ABCC3O15438 1527 aa32.77■■■□□ 2.84
COL6A1-203ENST00000466285 EIF2AK4Q9P2K8 1649 aaKnown RBP32.77■■■□□ 2.84
COL6A1-203ENST00000466285 ZC3H13Q5T200 1668 aaKnown RBP32.75■■■□□ 2.83
COL6A1-203ENST00000466285 RSPH4AQ5TD94 716 aa32.73■■■□□ 2.83
COL6A1-203ENST00000466285 PKD2Q13563 968 aa32.71■■■□□ 2.83
COL6A1-203ENST00000466285 WASHC2CQ9Y4E1 1318 aa32.71■■■□□ 2.83
COL6A1-203ENST00000466285 MIA2Q96PC5 1412 aa32.7■■■□□ 2.83
COL6A1-203ENST00000466285 TSPY4P0CV99 314 aa32.68■■■□□ 2.82
COL6A1-203ENST00000466285 TSPY10P0CW01 314 aa32.68■■■□□ 2.82
COL6A1-203ENST00000466285 PTPN23Q9H3S7 1636 aa32.68■■■□□ 2.82
COL6A1-203ENST00000466285 SPATA31D1Q6ZQQ2 1576 aa32.66■■■□□ 2.82
COL6A1-203ENST00000466285 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.64■■■□□ 2.82
COL6A1-203ENST00000466285 UGGT1Q9NYU2 1555 aa32.64■■■□□ 2.82
COL6A1-203ENST00000466285 CFAP65Q6ZU64 1925 aaKnown RBP32.63■■■□□ 2.81
COL6A1-203ENST00000466285 ERVK-7P63135 1459 aa32.62■■■□□ 2.81
COL6A1-203ENST00000466285 NLRP1Q9C000 1473 aa32.62■■■□□ 2.81
COL6A1-203ENST00000466285 DUOX2Q9NRD8 1548 aa32.61■■■□□ 2.81
COL6A1-203ENST00000466285 ABCC5O15440 1437 aa32.6■■■□□ 2.81
COL6A1-203ENST00000466285 VWDEQ8N2E2 1590 aa32.6■■■□□ 2.81
COL6A1-203ENST00000466285 PRDM15P57071 1507 aaPredicted RBP32.59■■■□□ 2.81
COL6A1-203ENST00000466285 SHANK2Q9UPX8 1470 aa32.59■■■□□ 2.81
COL6A1-203ENST00000466285 DEPDC5O75140 1603 aa32.57■■■□□ 2.8
COL6A1-203ENST00000466285 DISP3Q9P2K9 1392 aa32.56■■■□□ 2.8
COL6A1-203ENST00000466285 UBR1Q8IWV7 1749 aa32.55■■■□□ 2.8
COL6A1-203ENST00000466285 IQGAP1P46940 1657 aa32.55■■■□□ 2.8
COL6A1-203ENST00000466285 STRCP1A6NGW2 1772 aa32.55■■■□□ 2.8
COL6A1-203ENST00000466285 KIF15Q9NS87 1388 aa32.54■■■□□ 2.8
COL6A1-203ENST00000466285 DAPK1P53355 1430 aa32.52■■■□□ 2.8
COL6A1-203ENST00000466285 FGD6Q6ZV73 1430 aa32.52■■■□□ 2.8
COL6A1-203ENST00000466285 ILDR2Q71H61 639 aa32.52■■■□□ 2.8
COL6A1-203ENST00000466285 MED14O60244 1454 aa32.5■■■□□ 2.79
COL6A1-203ENST00000466285 UBAP1LF5GYI3 381 aa32.5■■■□□ 2.79
COL6A1-203ENST00000466285 NPHP4O75161 1426 aaPredicted RBP32.5■■■□□ 2.79
COL6A1-203ENST00000466285 CPS1P31327 1500 aa32.47■■■□□ 2.79
COL6A1-203ENST00000466285 ERBINQ96RT1 1412 aa32.47■■■□□ 2.79
COL6A1-203ENST00000466285 ALKQ9UM73 1620 aa32.47■■■□□ 2.79
COL6A1-203ENST00000466285 RRP7BPQ9NSQ0 103 aa32.44■■■□□ 2.78
COL6A1-203ENST00000466285 ANKLE2Q86XL3 938 aa32.43■■■□□ 2.78
COL6A1-203ENST00000466285 THEMISQ8N1K5 641 aaPredicted RBP32.42■■■□□ 2.78
COL6A1-203ENST00000466285 PIK3C2BO00750 1634 aa32.41■■■□□ 2.78
COL6A1-203ENST00000466285 ARHGAP31Q2M1Z3 1444 aa32.37■■■□□ 2.77
COL6A1-203ENST00000466285 ARHGAP23Q9P227 1491 aa32.35■■■□□ 2.77
COL6A1-203ENST00000466285 SYNMO15061 1565 aa32.34■■■□□ 2.77
COL6A1-203ENST00000466285 CHIC2Q9UKJ5 165 aa32.34■■■□□ 2.77
COL6A1-203ENST00000466285 APLP2Q06481 763 aa32.33■■■□□ 2.77
COL6A1-203ENST00000466285 SLIT1O75093 1534 aa32.32■■■□□ 2.76
COL6A1-203ENST00000466285 SCAF11Q99590 1463 aaKnown RBP32.32■■■□□ 2.76
COL6A1-203ENST00000466285 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.32■■■□□ 2.76
COL6A1-203ENST00000466285 LMTK2Q8IWU2 1503 aa32.31■■■□□ 2.76
COL6A1-203ENST00000466285 LRRC7Q96NW7 1537 aa32.3■■■□□ 2.76
COL6A1-203ENST00000466285 ADGRL2O95490 1459 aa32.29■■■□□ 2.76
COL6A1-203ENST00000466285 XIRP1Q702N8 1843 aaKnown RBP32.28■■■□□ 2.76
COL6A1-203ENST00000466285 EFCAB6Q5THR3 1501 aa32.28■■■□□ 2.76
COL6A1-203ENST00000466285 PIP4K2BP78356 416 aa32.28■■■□□ 2.76
COL6A1-203ENST00000466285 SCAF1Q9H7N4 1312 aaKnown RBP32.26■■■□□ 2.76
COL6A1-203ENST00000466285 LTKP29376 864 aa32.26■■■□□ 2.75
COL6A1-203ENST00000466285 ANKRD30AQ9BXX3 1397 aa32.26■■■□□ 2.75
COL6A1-203ENST00000466285 HSPA1LP34931 641 aa32.25■■■□□ 2.75
COL6A1-203ENST00000466285 MED1Q15648 1581 aaPredicted RBP32.21■■■□□ 2.75
COL6A1-203ENST00000466285 KDM5AP29375 1690 aaKnown RBP32.2■■■□□ 2.74
COL6A1-203ENST00000466285 KANK1Q14678 1352 aa32.18■■■□□ 2.74
COL6A1-203ENST00000466285 NOS1P29475 1434 aa32.17■■■□□ 2.74
COL6A1-203ENST00000466285 MYO5BQ9ULV0 1848 aa32.16■■■□□ 2.74
COL6A1-203ENST00000466285 ADGRB3O60242 1522 aa32.16■■■□□ 2.74
COL6A1-203ENST00000466285 FAM50AQ14320 339 aaKnown RBP32.15■■■□□ 2.74
COL6A1-203ENST00000466285 TMEM2Q9UHN6 1383 aa32.15■■■□□ 2.74
COL6A1-203ENST00000466285 TOM1O60784 492 aa32.14■■■□□ 2.74
COL6A1-203ENST00000466285 TXNDC2Q86VQ3 553 aa32.13■■■□□ 2.73
COL6A1-203ENST00000466285 SOCS7O14512 581 aa32.12■■■□□ 2.73
COL6A1-203ENST00000466285 TET3O43151 1660 aa32.11■■■□□ 2.73
COL6A1-203ENST00000466285 UNC13BO14795 1591 aa32.11■■■□□ 2.73
COL6A1-203ENST00000466285 IDI1Q13907 227 aa32.1■■■□□ 2.73
COL6A1-203ENST00000466285 ANKRD50Q9ULJ7 1429 aa32.09■■■□□ 2.73
COL6A1-203ENST00000466285 GCC2Q8IWJ2 1684 aa32.09■■■□□ 2.73
COL6A1-203ENST00000466285 SENP3Q9H4L4 574 aaPredicted RBP32.07■■■□□ 2.72
COL6A1-203ENST00000466285 E9PCH4 1651 aa32.03■■■□□ 2.72
COL6A1-203ENST00000466285 EID1Q9Y6B2 187 aa32■■■□□ 2.71
COL6A1-203ENST00000466285 NWD1Q149M9 1564 aa31.99■■■□□ 2.71
COL6A1-203ENST00000466285 RPRD2Q5VT52 1461 aaKnown RBP31.99■■■□□ 2.71
COL6A1-203ENST00000466285 STAG3Q9UJ98 1225 aa31.99■■■□□ 2.71
COL6A1-203ENST00000466285 TMEM131LA2VDJ0 1609 aa31.98■■■□□ 2.71
COL6A1-203ENST00000466285 IQGAP3Q86VI3 1631 aa31.96■■■□□ 2.71
COL6A1-203ENST00000466285 ZFYVE9O95405 1425 aa31.95■■■□□ 2.71
COL6A1-203ENST00000466285 SLC26A8Q96RN1 970 aa31.95■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms