RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ZCCHC11Q5TAX3 1644 aaKnown RBP12.28□□□□□ -0.44
SYNE1-217ENST00000466159 RGL3Q3MIN7 710 aa12.27□□□□□ -0.44
SYNE1-217ENST00000466159 ARID4BQ4LE39 1312 aaPredicted RBP12.27□□□□□ -0.44
SYNE1-217ENST00000466159 CCDC144AA2RUR9 1427 aa12.27□□□□□ -0.45
SYNE1-217ENST00000466159 CLASP1Q7Z460 1538 aa12.27□□□□□ -0.45
SYNE1-217ENST00000466159 UNC13BO14795 1591 aa12.27□□□□□ -0.45
SYNE1-217ENST00000466159 IRX6P78412 446 aaPredicted RBP12.26□□□□□ -0.45
SYNE1-217ENST00000466159 PLA2R1Q13018 1463 aa12.26□□□□□ -0.45
SYNE1-217ENST00000466159 PLCH2O75038 1416 aa12.26□□□□□ -0.45
SYNE1-217ENST00000466159 PLXNC1O60486 1568 aa12.26□□□□□ -0.45
SYNE1-217ENST00000466159 ROCK2O75116 1388 aaKnown RBP12.26□□□□□ -0.45
SYNE1-217ENST00000466159 EFCAB2Q5VUJ9 269 aa12.24□□□□□ -0.45
SYNE1-217ENST00000466159 ZBED9Q6R2W3 1325 aa12.24□□□□□ -0.45
SYNE1-217ENST00000466159 UHRF1BP1LA0JNW5 1464 aa12.23□□□□□ -0.45
SYNE1-217ENST00000466159 IQGAP3Q86VI3 1631 aa12.23□□□□□ -0.45
SYNE1-217ENST00000466159 DUOX2Q9NRD8 1548 aa12.23□□□□□ -0.45
SYNE1-217ENST00000466159 DNAJC5Q9H3Z4 198 aa12.23□□□□□ -0.45
SYNE1-217ENST00000466159 PRAG1Q86YV5 1406 aa12.23□□□□□ -0.45
SYNE1-217ENST00000466159 NBPF1Q3BBV0 1214 aa12.23□□□□□ -0.45
SYNE1-217ENST00000466159 TRAPPC8Q9Y2L5 1435 aa12.22□□□□□ -0.45
SYNE1-217ENST00000466159 TRPM1Q7Z4N2 1603 aa12.22□□□□□ -0.45
SYNE1-217ENST00000466159 A2MP01023 1474 aa12.21□□□□□ -0.45
SYNE1-217ENST00000466159 ABCC1P33527 1531 aa12.21□□□□□ -0.46
SYNE1-217ENST00000466159 ERBINQ96RT1 1412 aa12.2□□□□□ -0.46
SYNE1-217ENST00000466159 MAGI2Q86UL8 1455 aa12.19□□□□□ -0.46
SYNE1-217ENST00000466159 AFAP1Q8N556 730 aa12.19□□□□□ -0.46
SYNE1-217ENST00000466159 SENP3-EIF4A1A0A087X0R7 540 aa12.17□□□□□ -0.46
SYNE1-217ENST00000466159 TMC1Q8TDI8 760 aa12.17□□□□□ -0.46
SYNE1-217ENST00000466159 SPAG9O60271 1321 aaKnown RBP12.17□□□□□ -0.46
SYNE1-217ENST00000466159 ATP10AO60312 1499 aa12.17□□□□□ -0.46
SYNE1-217ENST00000466159 PNISRQ8TF01 805 aaKnown RBP12.17□□□□□ -0.46
SYNE1-217ENST00000466159 GPRASP1Q5JY77 1395 aa12.16□□□□□ -0.46
SYNE1-217ENST00000466159 E9PCH4 1651 aa12.16□□□□□ -0.46
SYNE1-217ENST00000466159 PRDM15P57071 1507 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-217ENST00000466159 MYBBP1AQ9BQG0 1328 aaKnown RBP12.13□□□□□ -0.47
SYNE1-217ENST00000466159 TESK2Q96S53 571 aa12.13□□□□□ -0.47
SYNE1-217ENST00000466159 ZFYVE16Q7Z3T8 1539 aa12.13□□□□□ -0.47
SYNE1-217ENST00000466159 WDR7Q9Y4E6 1490 aa12.13□□□□□ -0.47
SYNE1-217ENST00000466159 RTEL1-TNFRSF6BF6WH68 1400 aa12.13□□□□□ -0.47
SYNE1-217ENST00000466159 RALBP1Q15311 655 aa12.13□□□□□ -0.47
SYNE1-217ENST00000466159 ERICH6BQ5W0A0 696 aa12.13□□□□□ -0.47
SYNE1-217ENST00000466159 ARAP3Q8WWN8 1544 aa12.13□□□□□ -0.47
SYNE1-217ENST00000466159 DISP3Q9P2K9 1392 aa12.12□□□□□ -0.47
SYNE1-217ENST00000466159 RBM19Q9Y4C8 960 aaKnown RBP12.12□□□□□ -0.47
SYNE1-217ENST00000466159 LAMC1P11047 1609 aa12.12□□□□□ -0.47
SYNE1-217ENST00000466159 PPP4R2Q9NY27 417 aa12.12□□□□□ -0.47
SYNE1-217ENST00000466159 PER1O15534 1290 aaPredicted RBP12.11□□□□□ -0.47
SYNE1-217ENST00000466159 SMG6Q86US8 1419 aaKnown RBP12.11□□□□□ -0.47
SYNE1-217ENST00000466159 EIF2AK4Q9P2K8 1649 aaKnown RBP12.11□□□□□ -0.47
SYNE1-217ENST00000466159 BRD4O60885 1362 aaPredicted RBP12.11□□□□□ -0.47
SYNE1-217ENST00000466159 KTN1Q86UP2 1357 aaKnown RBP12.11□□□□□ -0.47
SYNE1-217ENST00000466159 FANCAO15360 1455 aa12.11□□□□□ -0.47
SYNE1-217ENST00000466159 COL17A1Q9UMD9 1497 aaPredicted RBP12.11□□□□□ -0.47
SYNE1-217ENST00000466159 NUDCQ9Y266 331 aa12.1□□□□□ -0.47
SYNE1-217ENST00000466159 LRPPRCP42704 1394 aaKnown RBP12.1□□□□□ -0.47
SYNE1-217ENST00000466159 MYT1LQ9UL68 1186 aa12.09□□□□□ -0.47
SYNE1-217ENST00000466159 ABCA9Q8IUA7 1624 aa12.09□□□□□ -0.47
SYNE1-217ENST00000466159 PARD3Q8TEW0 1356 aa12.08□□□□□ -0.47
SYNE1-217ENST00000466159 SCAPERQ9BY12 1400 aa12.08□□□□□ -0.48
SYNE1-217ENST00000466159 ATP7AQ04656 1500 aa12.08□□□□□ -0.48
SYNE1-217ENST00000466159 KIF3BO15066 747 aa12.08□□□□□ -0.48
SYNE1-217ENST00000466159 B4GALNT3Q6L9W6 998 aa12.08□□□□□ -0.48
SYNE1-217ENST00000466159 TMF1P82094 1093 aa12.07□□□□□ -0.48
SYNE1-217ENST00000466159 PANK3Q9H999 370 aa12.07□□□□□ -0.48
SYNE1-217ENST00000466159 DEPDC5O75140 1603 aa12.07□□□□□ -0.48
SYNE1-217ENST00000466159 TRPM2O94759 1503 aa12.07□□□□□ -0.48
SYNE1-217ENST00000466159 CC2D1BQ5T0F9 858 aaKnown RBP12.07□□□□□ -0.48
SYNE1-217ENST00000466159 NLRP13Q86W25 1043 aa12.07□□□□□ -0.48
SYNE1-217ENST00000466159 SPHKAPQ2M3C7 1700 aa12.07□□□□□ -0.48
SYNE1-217ENST00000466159 RNF17Q9BXT8 1623 aaKnown RBP12.07□□□□□ -0.48
SYNE1-217ENST00000466159 INO80Q9ULG1 1556 aaPredicted RBP12.07□□□□□ -0.48
SYNE1-217ENST00000466159 ADGRL1O94910 1474 aa12.07□□□□□ -0.48
SYNE1-217ENST00000466159 PTPRTO14522 1441 aa12.06□□□□□ -0.48
SYNE1-217ENST00000466159 ASXL2Q76L83 1435 aa12.06□□□□□ -0.48
SYNE1-217ENST00000466159 CLTCL1P53675 1640 aa12.06□□□□□ -0.48
SYNE1-217ENST00000466159 MADDQ8WXG6 1647 aa12.06□□□□□ -0.48
SYNE1-217ENST00000466159 CEP152O94986 1710 aa12.06□□□□□ -0.48
SYNE1-217ENST00000466159 TET3O43151 1660 aa12.05□□□□□ -0.48
SYNE1-217ENST00000466159 KANK1Q14678 1352 aa12.05□□□□□ -0.48
SYNE1-217ENST00000466159 SALL2Q9Y467 1007 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-217ENST00000466159 RNF123Q5XPI4 1314 aa12.04□□□□□ -0.48
SYNE1-217ENST00000466159 VWDEQ8N2E2 1590 aa12.03□□□□□ -0.48
SYNE1-217ENST00000466159 WASHC2CQ9Y4E1 1318 aa12.03□□□□□ -0.48
SYNE1-217ENST00000466159 IQGAP1P46940 1657 aa12.02□□□□□ -0.49
SYNE1-217ENST00000466159 MROH1Q8NDA8 1641 aa12.01□□□□□ -0.49
SYNE1-217ENST00000466159 UGGT1Q9NYU2 1555 aa12□□□□□ -0.49
SYNE1-217ENST00000466159 STAC3Q96MF2 364 aa12□□□□□ -0.49
SYNE1-217ENST00000466159 KIDINS220Q9ULH0 1771 aa12□□□□□ -0.49
SYNE1-217ENST00000466159 SCAF11Q99590 1463 aaKnown RBP12□□□□□ -0.49
SYNE1-217ENST00000466159 NPM1P06748 294 aaKnown RBP eCLIP11.99□□□□□ -0.49
SYNE1-217ENST00000466159 OSCARQ8IYS5 282 aa11.98□□□□□ -0.49
SYNE1-217ENST00000466159 CFAP70Q5T0N1 1121 aa11.97□□□□□ -0.49
SYNE1-217ENST00000466159 ADGRF5Q8IZF2 1346 aa11.97□□□□□ -0.49
SYNE1-217ENST00000466159 KNSTRNQ9Y448 316 aa11.97□□□□□ -0.49
SYNE1-217ENST00000466159 ZNF518AQ6AHZ1 1483 aa11.97□□□□□ -0.49
SYNE1-217ENST00000466159 EFCAB6Q5THR3 1501 aa11.96□□□□□ -0.49
SYNE1-217ENST00000466159 CDCA7LQ96GN5 454 aa11.96□□□□□ -0.5
SYNE1-217ENST00000466159 ANP32EQ9BTT0 268 aa11.96□□□□□ -0.5
SYNE1-217ENST00000466159 CDCA8Q53HL2 280 aa11.95□□□□□ -0.5
SYNE1-217ENST00000466159 CCDC136Q96JN2 1154 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms