RNA–Protein interactions for RNA: ENST00000465143.1

ITSN1-223, Transcript of intersectin 1, human

TSL 3

Gene ITSN1, Length 614 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-223	ENST00000465143	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.8	□□□□□ -0.52
ITSN1-223	ENST00000465143	KDM5C	P41229	1560 aa		11.79	□□□□□ -0.52
ITSN1-223	ENST00000465143	SAMD9L	Q8IVG5	1584 aa		11.79	□□□□□ -0.52
ITSN1-223	ENST00000465143	CDC42BPB	Q9Y5S2	1711 aa		11.78	□□□□□ -0.52
ITSN1-223	ENST00000465143	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.77	□□□□□ -0.52
ITSN1-223	ENST00000465143	HECW2	Q9P2P5	1572 aa		11.77	□□□□□ -0.53
ITSN1-223	ENST00000465143	SSUH2	Q9Y2M2	353 aa		11.77	□□□□□ -0.53
ITSN1-223	ENST00000465143	MYOM3	Q5VTT5	1437 aa		11.77	□□□□□ -0.53
ITSN1-223	ENST00000465143	PTPRM	P28827	1452 aa		11.76	□□□□□ -0.53
ITSN1-223	ENST00000465143	CAMSAP2	Q08AD1	1489 aa		11.76	□□□□□ -0.53
ITSN1-223	ENST00000465143	MBD5	Q9P267	1494 aa		11.76	□□□□□ -0.53
ITSN1-223	ENST00000465143	CDC42BPA	Q5VT25	1732 aa		11.76	□□□□□ -0.53
ITSN1-223	ENST00000465143	MIA2	Q96PC5	1412 aa		11.76	□□□□□ -0.53
ITSN1-223	ENST00000465143	CCDC141	Q6ZP82	1450 aa		11.75	□□□□□ -0.53
ITSN1-223	ENST00000465143	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.73	□□□□□ -0.53
ITSN1-223	ENST00000465143	GGT6	Q6P531	493 aa		11.73	□□□□□ -0.53
ITSN1-223	ENST00000465143	ITSN2	Q9NZM3	1697 aa		11.73	□□□□□ -0.53
ITSN1-223	ENST00000465143	DIP2C	Q9Y2E4	1556 aa		11.73	□□□□□ -0.53
ITSN1-223	ENST00000465143	ATP7A	Q04656	1500 aa		11.72	□□□□□ -0.53
ITSN1-223	ENST00000465143	A2M	P01023	1474 aa		11.72	□□□□□ -0.53
ITSN1-223	ENST00000465143	FAM50A	Q14320	339 aa	Known RBP	11.72	□□□□□ -0.53
ITSN1-223	ENST00000465143	CHADL	Q6NUI6	762 aa		11.72	□□□□□ -0.53
ITSN1-223	ENST00000465143	C19orf67	A6NJJ6	358 aa		11.71	□□□□□ -0.53
ITSN1-223	ENST00000465143	CEBPA	P49715	358 aa	Predicted RBP	11.71	□□□□□ -0.53
ITSN1-223	ENST00000465143	DHX29	Q7Z478	1369 aa	Known RBP	11.7	□□□□□ -0.54
ITSN1-223	ENST00000465143	BCORL1	Q5H9F3	1711 aa		11.7	□□□□□ -0.54
ITSN1-223	ENST00000465143	KIF3B	O15066	747 aa		11.7	□□□□□ -0.54
ITSN1-223	ENST00000465143	ADAMTSL3	P82987	1691 aa		11.7	□□□□□ -0.54
ITSN1-223	ENST00000465143	ABCA6	Q8N139	1617 aa		11.7	□□□□□ -0.54
ITSN1-223	ENST00000465143	MADD	Q8WXG6	1647 aa		11.7	□□□□□ -0.54
ITSN1-223	ENST00000465143	AGL	P35573	1532 aa		11.7	□□□□□ -0.54
ITSN1-223	ENST00000465143	FGD6	Q6ZV73	1430 aa		11.69	□□□□□ -0.54
ITSN1-223	ENST00000465143	RERE	Q9P2R6	1566 aa		11.69	□□□□□ -0.54
ITSN1-223	ENST00000465143	CNTLN	Q9NXG0	1405 aa		11.68	□□□□□ -0.54
ITSN1-223	ENST00000465143	TRIM26	Q12899	539 aa	Predicted RBP	11.67	□□□□□ -0.54
ITSN1-223	ENST00000465143	RRP7BP	Q9NSQ0	103 aa		11.66	□□□□□ -0.54
ITSN1-223	ENST00000465143	CHIC2	Q9UKJ5	165 aa		11.66	□□□□□ -0.54
ITSN1-223	ENST00000465143	KIDINS220	Q9ULH0	1771 aa		11.66	□□□□□ -0.54
ITSN1-223	ENST00000465143	ARHGEF5	Q12774	1597 aa		11.66	□□□□□ -0.54
ITSN1-223	ENST00000465143	INO80	Q9ULG1	1556 aa	Predicted RBP	11.66	□□□□□ -0.54
ITSN1-223	ENST00000465143	ABCC5	O15440	1437 aa		11.65	□□□□□ -0.54
ITSN1-223	ENST00000465143	WASHC2C	Q9Y4E1	1318 aa		11.64	□□□□□ -0.55
ITSN1-223	ENST00000465143	SIGLEC1	Q9BZZ2	1709 aa		11.64	□□□□□ -0.55
ITSN1-223	ENST00000465143	ZMYM3	Q14202	1370 aa		11.64	□□□□□ -0.55
ITSN1-223	ENST00000465143	TCOF1	Q13428	1488 aa	Known RBP	11.63	□□□□□ -0.55
ITSN1-223	ENST00000465143	DAPK1	P53355	1430 aa		11.63	□□□□□ -0.55
ITSN1-223	ENST00000465143	RIMS1	Q86UR5	1692 aa	Known RBP	11.63	□□□□□ -0.55
ITSN1-223	ENST00000465143	GABBR2	O75899	941 aa		11.63	□□□□□ -0.55
ITSN1-223	ENST00000465143	HSPA2	P54652	639 aa		11.63	□□□□□ -0.55
ITSN1-223	ENST00000465143	ANKRD30A	Q9BXX3	1397 aa		11.63	□□□□□ -0.55
ITSN1-223	ENST00000465143	KIF15	Q9NS87	1388 aa		11.63	□□□□□ -0.55
ITSN1-223	ENST00000465143	PCGF6	Q9BYE7	350 aa		11.62	□□□□□ -0.55
ITSN1-223	ENST00000465143	PTPN23	Q9H3S7	1636 aa		11.61	□□□□□ -0.55
ITSN1-223	ENST00000465143	ITGAE	P38570	1179 aa		11.61	□□□□□ -0.55
ITSN1-223	ENST00000465143	SHANK2	Q9UPX8	1470 aa		11.61	□□□□□ -0.55
ITSN1-223	ENST00000465143	PLXNC1	O60486	1568 aa		11.61	□□□□□ -0.55
ITSN1-223	ENST00000465143	PRR29	P0C7W0	189 aa		11.6	□□□□□ -0.55
ITSN1-223	ENST00000465143	UHRF1BP1	Q6BDS2	1440 aa		11.6	□□□□□ -0.55
ITSN1-223	ENST00000465143	LMTK3	Q96Q04	1460 aa		11.59	□□□□□ -0.55
ITSN1-223	ENST00000465143	FER1L4	A9Z1Z3	1794 aa		11.58	□□□□□ -0.56
ITSN1-223	ENST00000465143	MAST1	Q9Y2H9	1570 aa		11.58	□□□□□ -0.56
ITSN1-223	ENST00000465143	DUOX2	Q9NRD8	1548 aa		11.56	□□□□□ -0.56
ITSN1-223	ENST00000465143	ADGB	Q8N7X0	1667 aa		11.56	□□□□□ -0.56
ITSN1-223	ENST00000465143	NPAT	Q14207	1427 aa		11.56	□□□□□ -0.56
ITSN1-223	ENST00000465143	NCOA1	Q15788	1441 aa		11.56	□□□□□ -0.56
ITSN1-223	ENST00000465143	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.56	□□□□□ -0.56
ITSN1-223	ENST00000465143	ERBIN	Q96RT1	1412 aa		11.56	□□□□□ -0.56
ITSN1-223	ENST00000465143	KANK1	Q14678	1352 aa		11.55	□□□□□ -0.56
ITSN1-223	ENST00000465143	PTPRK	Q15262	1439 aa		11.54	□□□□□ -0.56
ITSN1-223	ENST00000465143	RRBP1	Q9P2E9	1410 aa	Known RBP	11.54	□□□□□ -0.56
ITSN1-223	ENST00000465143	KDM5D	Q9BY66	1539 aa		11.54	□□□□□ -0.56
ITSN1-223	ENST00000465143	DNMT1	P26358	1616 aa	Known RBP	11.53	□□□□□ -0.56
ITSN1-223	ENST00000465143	TNR	Q92752	1358 aa		11.53	□□□□□ -0.56
ITSN1-223	ENST00000465143	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.53	□□□□□ -0.56
ITSN1-223	ENST00000465143	ANKRD50	Q9ULJ7	1429 aa		11.52	□□□□□ -0.56
ITSN1-223	ENST00000465143	ROCK1	Q13464	1354 aa		11.51	□□□□□ -0.57
ITSN1-223	ENST00000465143	ADGRL2	O95490	1459 aa		11.51	□□□□□ -0.57
ITSN1-223	ENST00000465143	PZP	P20742	1482 aa		11.51	□□□□□ -0.57
ITSN1-223	ENST00000465143	FAM135A	Q9P2D6	1515 aa		11.5	□□□□□ -0.57
ITSN1-223	ENST00000465143	ABCC3	O15438	1527 aa		11.49	□□□□□ -0.57
ITSN1-223	ENST00000465143	LHX8	Q68G74	356 aa		11.48	□□□□□ -0.57
ITSN1-223	ENST00000465143	CLTC	Q00610	1675 aa	Known RBP	11.48	□□□□□ -0.57
ITSN1-223	ENST00000465143	C3	P01024	1663 aa		11.47	□□□□□ -0.57
ITSN1-223	ENST00000465143	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.46	□□□□□ -0.57
ITSN1-223	ENST00000465143	NCKAP5L	Q9HCH0	1330 aa		11.46	□□□□□ -0.57
ITSN1-223	ENST00000465143	PKD2	Q13563	968 aa		11.46	□□□□□ -0.57
ITSN1-223	ENST00000465143	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.46	□□□□□ -0.57
ITSN1-223	ENST00000465143	STAG3	Q9UJ98	1225 aa		11.46	□□□□□ -0.57
ITSN1-223	ENST00000465143	MROH2A	A6NES4	1674 aa		11.46	□□□□□ -0.58
ITSN1-223	ENST00000465143	CROCC2	H7BZ55	1655 aa		11.46	□□□□□ -0.58
ITSN1-223	ENST00000465143	RNF17	Q9BXT8	1623 aa	Known RBP	11.46	□□□□□ -0.58
ITSN1-223	ENST00000465143	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.45	□□□□□ -0.58
ITSN1-223	ENST00000465143	A2ML1	A8K2U0	1454 aa		11.44	□□□□□ -0.58
ITSN1-223	ENST00000465143	PREX1	Q8TCU6	1659 aa		11.44	□□□□□ -0.58
ITSN1-223	ENST00000465143	CD44	P16070	742 aa	Known RBP	11.44	□□□□□ -0.58
ITSN1-223	ENST00000465143	PRDM15	P57071	1507 aa	Predicted RBP	11.44	□□□□□ -0.58
ITSN1-223	ENST00000465143	ERVK-7	P63135	1459 aa		11.44	□□□□□ -0.58
ITSN1-223	ENST00000465143	NLRP1	Q9C000	1473 aa		11.44	□□□□□ -0.58
ITSN1-223	ENST00000465143	ARHGAP31	Q2M1Z3	1444 aa		11.43	□□□□□ -0.58
ITSN1-223	ENST00000465143	NUP155	O75694	1391 aa		11.43	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms