RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 AFAP1Q8N556 730 aa4.8□□□□□ -1.64
USP40-211ENST00000464956 C8orf37Q96NL8 207 aa4.8□□□□□ -1.64
USP40-211ENST00000464956 KDM5DQ9BY66 1539 aa4.8□□□□□ -1.64
USP40-211ENST00000464956 MYO3AQ8NEV4 1616 aa4.79□□□□□ -1.64
USP40-211ENST00000464956 NWD1Q149M9 1564 aa4.79□□□□□ -1.64
USP40-211ENST00000464956 REREQ9P2R6 1566 aa4.79□□□□□ -1.64
USP40-211ENST00000464956 DEFB132Q7Z7B7 95 aa4.79□□□□□ -1.64
USP40-211ENST00000464956 SLAIN2Q9P270 581 aa4.79□□□□□ -1.64
USP40-211ENST00000464956 MED14O60244 1454 aa4.79□□□□□ -1.64
USP40-211ENST00000464956 TMEM94Q12767 1356 aa4.78□□□□□ -1.64
USP40-211ENST00000464956 PPP1R1BQ9UD71 204 aaPredicted RBP4.77□□□□□ -1.65
USP40-211ENST00000464956 TRPC5Q9UL62 973 aaPredicted RBP4.77□□□□□ -1.65
USP40-211ENST00000464956 PLCH2O75038 1416 aa4.77□□□□□ -1.65
USP40-211ENST00000464956 TNRQ92752 1358 aa4.77□□□□□ -1.65
USP40-211ENST00000464956 FAM135AQ9P2D6 1515 aa4.77□□□□□ -1.65
USP40-211ENST00000464956 DNMT1P26358 1616 aaKnown RBP4.76□□□□□ -1.65
USP40-211ENST00000464956 ROBO1Q9Y6N7 1651 aa4.76□□□□□ -1.65
USP40-211ENST00000464956 ABCC1P33527 1531 aa4.76□□□□□ -1.65
USP40-211ENST00000464956 MSH6P52701 1360 aa4.76□□□□□ -1.65
USP40-211ENST00000464956 BCL9LQ86UU0 1499 aa4.75□□□□□ -1.65
USP40-211ENST00000464956 DIP2CQ9Y2E4 1556 aa4.75□□□□□ -1.65
USP40-211ENST00000464956 BAG6P46379 1132 aa4.75□□□□□ -1.65
USP40-211ENST00000464956 R3HDM1Q15032 1099 aaKnown RBP4.75□□□□□ -1.65
USP40-211ENST00000464956 PROSER2Q86WR7 435 aaPredicted RBP4.75□□□□□ -1.65
USP40-211ENST00000464956 TNS4Q8IZW8 715 aa4.75□□□□□ -1.65
USP40-211ENST00000464956 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.75□□□□□ -1.65
USP40-211ENST00000464956 MLH3Q9UHC1 1453 aa4.75□□□□□ -1.65
USP40-211ENST00000464956 MROH2AA6NES4 1674 aa4.74□□□□□ -1.65
USP40-211ENST00000464956 GGT6Q6P531 493 aa4.74□□□□□ -1.65
USP40-211ENST00000464956 USP21Q9UK80 565 aa4.74□□□□□ -1.65
USP40-211ENST00000464956 NINLQ9Y2I6 1382 aa4.74□□□□□ -1.65
USP40-211ENST00000464956 KDM5CP41229 1560 aa4.74□□□□□ -1.65
USP40-211ENST00000464956 DEPDC5O75140 1603 aa4.73□□□□□ -1.65
USP40-211ENST00000464956 PHLPP1O60346 1717 aa4.73□□□□□ -1.65
USP40-211ENST00000464956 SUPT6HQ7KZ85 1726 aaKnown RBP4.73□□□□□ -1.65
USP40-211ENST00000464956 P3H3Q8IVL6 736 aa4.73□□□□□ -1.65
USP40-211ENST00000464956 POLR1AO95602 1720 aaPredicted RBP4.72□□□□□ -1.65
USP40-211ENST00000464956 COL13A1Q5TAT6 717 aaPredicted RBP4.72□□□□□ -1.65
USP40-211ENST00000464956 ATP7AQ04656 1500 aa4.72□□□□□ -1.65
USP40-211ENST00000464956 IQGAP1P46940 1657 aa4.71□□□□□ -1.66
USP40-211ENST00000464956 UGGT1Q9NYU2 1555 aa4.71□□□□□ -1.66
USP40-211ENST00000464956 SCAF11Q99590 1463 aaKnown RBP4.71□□□□□ -1.66
USP40-211ENST00000464956 NLRP1Q9C000 1473 aa4.71□□□□□ -1.66
USP40-211ENST00000464956 ADAMTS2O95450 1211 aa4.71□□□□□ -1.66
USP40-211ENST00000464956 HSPA6P17066 643 aa4.71□□□□□ -1.66
USP40-211ENST00000464956 KCNA6P17658 529 aa4.71□□□□□ -1.66
USP40-211ENST00000464956 FBXO31Q5XUX0 539 aaPredicted RBP4.71□□□□□ -1.66
USP40-211ENST00000464956 COL16A1Q07092 1604 aaPredicted RBP4.71□□□□□ -1.66
USP40-211ENST00000464956 RTEL1-TNFRSF6BF6WH68 1400 aa4.71□□□□□ -1.66
USP40-211ENST00000464956 LRRC59Q96AG4 307 aaKnown RBP4.7□□□□□ -1.66
USP40-211ENST00000464956 SPON1Q9HCB6 807 aa4.7□□□□□ -1.66
USP40-211ENST00000464956 EID1Q9Y6B2 187 aa4.7□□□□□ -1.66
USP40-211ENST00000464956 MIA2Q96PC5 1412 aa4.7□□□□□ -1.66
USP40-211ENST00000464956 NUP153P49790 1475 aaKnown RBP4.69□□□□□ -1.66
USP40-211ENST00000464956 ABCA6Q8N139 1617 aa4.69□□□□□ -1.66
USP40-211ENST00000464956 ABCC3O15438 1527 aa4.69□□□□□ -1.66
USP40-211ENST00000464956 TXNDC2Q86VQ3 553 aa4.69□□□□□ -1.66
USP40-211ENST00000464956 STRCP1A6NGW2 1772 aa4.68□□□□□ -1.66
USP40-211ENST00000464956 MAP3K1Q13233 1512 aa4.68□□□□□ -1.66
USP40-211ENST00000464956 C14orf37Q86TY3 774 aa4.68□□□□□ -1.66
USP40-211ENST00000464956 CADPS2Q86UW7 1296 aa4.68□□□□□ -1.66
USP40-211ENST00000464956 FNBP4Q8N3X1 1017 aaPredicted RBP4.68□□□□□ -1.66
USP40-211ENST00000464956 GJD4Q96KN9 370 aaPredicted RBP4.68□□□□□ -1.66
USP40-211ENST00000464956 ATRNO75882 1429 aa4.68□□□□□ -1.66
USP40-211ENST00000464956 SETD5Q9C0A6 1442 aa4.67□□□□□ -1.66
USP40-211ENST00000464956 FAM83GA6ND36 823 aa4.67□□□□□ -1.66
USP40-211ENST00000464956 KCNQ2O43526 872 aa4.67□□□□□ -1.66
USP40-211ENST00000464956 ATF3P18847 181 aa4.67□□□□□ -1.66
USP40-211ENST00000464956 EN1Q05925 392 aaPredicted RBP4.67□□□□□ -1.66
USP40-211ENST00000464956 WWC3Q9ULE0 1092 aa4.67□□□□□ -1.66
USP40-211ENST00000464956 KIF14Q15058 1648 aa4.67□□□□□ -1.66
USP40-211ENST00000464956 AHDC1Q5TGY3 1603 aaPredicted RBP4.67□□□□□ -1.66
USP40-211ENST00000464956 RALGAPBQ86X10 1494 aa4.67□□□□□ -1.66
USP40-211ENST00000464956 SPAG9O60271 1321 aaKnown RBP4.67□□□□□ -1.66
USP40-211ENST00000464956 SHPRHQ149N8 1683 aa4.67□□□□□ -1.66
USP40-211ENST00000464956 PRDM15P57071 1507 aaPredicted RBP4.67□□□□□ -1.66
USP40-211ENST00000464956 ARHGAP5Q13017 1502 aa4.67□□□□□ -1.66
USP40-211ENST00000464956 LTKP29376 864 aa4.66□□□□□ -1.66
USP40-211ENST00000464956 PZPP20742 1482 aa4.66□□□□□ -1.66
USP40-211ENST00000464956 ARHGAP23Q9P227 1491 aa4.66□□□□□ -1.66
USP40-211ENST00000464956 CLTCQ00610 1675 aaKnown RBP4.66□□□□□ -1.66
USP40-211ENST00000464956 AATKQ6ZMQ8 1374 aa4.65□□□□□ -1.66
USP40-211ENST00000464956 PNPLA6Q8IY17 1366 aa4.65□□□□□ -1.66
USP40-211ENST00000464956 ITSN2Q9NZM3 1697 aa4.65□□□□□ -1.66
USP40-211ENST00000464956 NKTRP30414 1462 aaKnown RBP4.65□□□□□ -1.66
USP40-211ENST00000464956 CHIC1Q5VXU3 224 aa4.65□□□□□ -1.67
USP40-211ENST00000464956 BRINP3Q76B58 766 aa4.65□□□□□ -1.67
USP40-211ENST00000464956 KRT27Q7Z3Y8 459 aa4.65□□□□□ -1.67
USP40-211ENST00000464956 CDK11AQ9UQ88 783 aaPredicted RBP4.65□□□□□ -1.67
USP40-211ENST00000464956 WASHC2CQ9Y4E1 1318 aa4.65□□□□□ -1.67
USP40-211ENST00000464956 UNC13BO14795 1591 aa4.65□□□□□ -1.67
USP40-211ENST00000464956 TIAM1Q13009 1591 aa4.65□□□□□ -1.67
USP40-211ENST00000464956 A2MP01023 1474 aa4.64□□□□□ -1.67
USP40-211ENST00000464956 APLP1P51693 650 aa4.64□□□□□ -1.67
USP40-211ENST00000464956 NBPF8Q3BBV2 869 aa4.64□□□□□ -1.67
USP40-211ENST00000464956 NBPF14Q5TI25 921 aa4.64□□□□□ -1.67
USP40-211ENST00000464956 SEPT12Q8IYM1 358 aa4.64□□□□□ -1.67
USP40-211ENST00000464956 HNRNPMP52272 730 aaKnown RBP eCLIP4.63□□□□□ -1.67
USP40-211ENST00000464956 SLC26A8Q96RN1 970 aa4.63□□□□□ -1.67
USP40-211ENST00000464956 C19orf44Q9H6X5 657 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms