RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 A2ML1A8K2U0 1454 aa25.57■■□□□ 1.68
COL7A1-204ENST00000462475 FAM135AQ9P2D6 1515 aa25.57■■□□□ 1.68
COL7A1-204ENST00000462475 PZPP20742 1482 aa25.55■■□□□ 1.68
COL7A1-204ENST00000462475 PKD2Q13563 968 aa25.55■■□□□ 1.68
COL7A1-204ENST00000462475 FBXO31Q5XUX0 539 aaPredicted RBP25.55■■□□□ 1.68
COL7A1-204ENST00000462475 IQSEC2Q5JU85 1478 aa25.54■■□□□ 1.68
COL7A1-204ENST00000462475 MAP3K1Q13233 1512 aa25.54■■□□□ 1.68
COL7A1-204ENST00000462475 TSPY4P0CV99 314 aa25.54■■□□□ 1.68
COL7A1-204ENST00000462475 TSPY10P0CW01 314 aa25.54■■□□□ 1.68
COL7A1-204ENST00000462475 ZNF335Q9H4Z2 1342 aaPredicted RBP25.54■■□□□ 1.68
COL7A1-204ENST00000462475 TNRQ92752 1358 aa25.54■■□□□ 1.68
COL7A1-204ENST00000462475 DNMT1P26358 1616 aaKnown RBP25.53■■□□□ 1.68
COL7A1-204ENST00000462475 WASHC2CQ9Y4E1 1318 aa25.52■■□□□ 1.68
COL7A1-204ENST00000462475 MAST1Q9Y2H9 1570 aa25.51■■□□□ 1.67
COL7A1-204ENST00000462475 MYOM3Q5VTT5 1437 aa25.5■■□□□ 1.67
COL7A1-204ENST00000462475 MIA2Q96PC5 1412 aa25.47■■□□□ 1.67
COL7A1-204ENST00000462475 RNF17Q9BXT8 1623 aaKnown RBP25.46■■□□□ 1.67
COL7A1-204ENST00000462475 ABCC3O15438 1527 aa25.43■■□□□ 1.66
COL7A1-204ENST00000462475 NEURL4Q96JN8 1562 aa25.43■■□□□ 1.66
COL7A1-204ENST00000462475 EIF2AK4Q9P2K8 1649 aaKnown RBP25.41■■□□□ 1.66
COL7A1-204ENST00000462475 NLRP1Q9C000 1473 aa25.4■■□□□ 1.66
COL7A1-204ENST00000462475 MROH1Q8NDA8 1641 aa25.4■■□□□ 1.66
COL7A1-204ENST00000462475 POLR1AO95602 1720 aaPredicted RBP25.4■■□□□ 1.66
COL7A1-204ENST00000462475 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.39■■□□□ 1.65
COL7A1-204ENST00000462475 ZC3H13Q5T200 1668 aaKnown RBP25.38■■□□□ 1.65
COL7A1-204ENST00000462475 UGGT1Q9NYU2 1555 aa25.37■■□□□ 1.65
COL7A1-204ENST00000462475 DISP3Q9P2K9 1392 aa25.37■■□□□ 1.65
COL7A1-204ENST00000462475 SPATA31D1Q6ZQQ2 1576 aa25.35■■□□□ 1.65
COL7A1-204ENST00000462475 UBAP1LF5GYI3 381 aa25.35■■□□□ 1.65
COL7A1-204ENST00000462475 DUOX2Q9NRD8 1548 aa25.35■■□□□ 1.65
COL7A1-204ENST00000462475 ERVK-7P63135 1459 aa25.34■■□□□ 1.65
COL7A1-204ENST00000462475 ABCC5O15440 1437 aa25.33■■□□□ 1.65
COL7A1-204ENST00000462475 THEMISQ8N1K5 641 aaPredicted RBP25.33■■□□□ 1.65
COL7A1-204ENST00000462475 SHANK2Q9UPX8 1470 aa25.33■■□□□ 1.65
COL7A1-204ENST00000462475 KIF15Q9NS87 1388 aa25.32■■□□□ 1.64
COL7A1-204ENST00000462475 ANKLE2Q86XL3 938 aa25.32■■□□□ 1.64
COL7A1-204ENST00000462475 PTPN23Q9H3S7 1636 aa25.32■■□□□ 1.64
COL7A1-204ENST00000462475 CROCC2H7BZ55 1655 aa25.31■■□□□ 1.64
COL7A1-204ENST00000462475 CEP152O94986 1710 aa25.3■■□□□ 1.64
COL7A1-204ENST00000462475 APLP2Q06481 763 aa25.3■■□□□ 1.64
COL7A1-204ENST00000462475 NPHP4O75161 1426 aaPredicted RBP25.29■■□□□ 1.64
COL7A1-204ENST00000462475 MED14O60244 1454 aa25.28■■□□□ 1.64
COL7A1-204ENST00000462475 CPS1P31327 1500 aa25.28■■□□□ 1.64
COL7A1-204ENST00000462475 DEPDC5O75140 1603 aa25.28■■□□□ 1.64
COL7A1-204ENST00000462475 FGD6Q6ZV73 1430 aa25.28■■□□□ 1.64
COL7A1-204ENST00000462475 PRDM15P57071 1507 aaPredicted RBP25.27■■□□□ 1.64
COL7A1-204ENST00000462475 VWDEQ8N2E2 1590 aa25.27■■□□□ 1.64
COL7A1-204ENST00000462475 DAPK1P53355 1430 aa25.27■■□□□ 1.64
COL7A1-204ENST00000462475 ERBINQ96RT1 1412 aa25.27■■□□□ 1.64
COL7A1-204ENST00000462475 ILDR2Q71H61 639 aa25.26■■□□□ 1.63
COL7A1-204ENST00000462475 RRP7BPQ9NSQ0 103 aa25.26■■□□□ 1.63
COL7A1-204ENST00000462475 IQGAP1P46940 1657 aa25.22■■□□□ 1.63
COL7A1-204ENST00000462475 ARHGAP31Q2M1Z3 1444 aa25.2■■□□□ 1.63
COL7A1-204ENST00000462475 UBR1Q8IWV7 1749 aa25.18■■□□□ 1.62
COL7A1-204ENST00000462475 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.17■■□□□ 1.62
COL7A1-204ENST00000462475 CHIC2Q9UKJ5 165 aa25.17■■□□□ 1.62
COL7A1-204ENST00000462475 SCAF1Q9H7N4 1312 aaKnown RBP25.15■■□□□ 1.62
COL7A1-204ENST00000462475 PIP4K2BP78356 416 aa25.15■■□□□ 1.62
COL7A1-204ENST00000462475 ANKRD30AQ9BXX3 1397 aa25.15■■□□□ 1.62
COL7A1-204ENST00000462475 SCAF11Q99590 1463 aaKnown RBP25.15■■□□□ 1.62
COL7A1-204ENST00000462475 CFAP65Q6ZU64 1925 aaKnown RBP25.14■■□□□ 1.62
COL7A1-204ENST00000462475 TOM1O60784 492 aa25.13■■□□□ 1.61
COL7A1-204ENST00000462475 ARHGAP23Q9P227 1491 aa25.13■■□□□ 1.61
COL7A1-204ENST00000462475 KANK1Q14678 1352 aa25.12■■□□□ 1.61
COL7A1-204ENST00000462475 SLIT1O75093 1534 aa25.12■■□□□ 1.61
COL7A1-204ENST00000462475 STRCP1A6NGW2 1772 aa25.11■■□□□ 1.61
COL7A1-204ENST00000462475 ALKQ9UM73 1620 aa25.11■■□□□ 1.61
COL7A1-204ENST00000462475 LMTK2Q8IWU2 1503 aa25.11■■□□□ 1.61
COL7A1-204ENST00000462475 LTKP29376 864 aa25.1■■□□□ 1.61
COL7A1-204ENST00000462475 HSPA1LP34931 641 aa25.1■■□□□ 1.61
COL7A1-204ENST00000462475 LRRC7Q96NW7 1537 aa25.09■■□□□ 1.61
COL7A1-204ENST00000462475 ADGRL2O95490 1459 aa25.09■■□□□ 1.61
COL7A1-204ENST00000462475 PIK3C2BO00750 1634 aa25.08■■□□□ 1.61
COL7A1-204ENST00000462475 SOCS7O14512 581 aa25.07■■□□□ 1.6
COL7A1-204ENST00000462475 TXNDC2Q86VQ3 553 aa25.07■■□□□ 1.6
COL7A1-204ENST00000462475 SYNMO15061 1565 aa25.06■■□□□ 1.6
COL7A1-204ENST00000462475 FAM50AQ14320 339 aaKnown RBP25.04■■□□□ 1.6
COL7A1-204ENST00000462475 EFCAB6Q5THR3 1501 aa25.03■■□□□ 1.6
COL7A1-204ENST00000462475 TMEM2Q9UHN6 1383 aa25.03■■□□□ 1.6
COL7A1-204ENST00000462475 EID1Q9Y6B2 187 aa25.01■■□□□ 1.59
COL7A1-204ENST00000462475 NOS1P29475 1434 aa25.01■■□□□ 1.59
COL7A1-204ENST00000462475 IDI1Q13907 227 aa25■■□□□ 1.59
COL7A1-204ENST00000462475 STAG3Q9UJ98 1225 aa25■■□□□ 1.59
COL7A1-204ENST00000462475 ANKRD50Q9ULJ7 1429 aa24.98■■□□□ 1.59
COL7A1-204ENST00000462475 KDM5AP29375 1690 aaKnown RBP24.97■■□□□ 1.59
COL7A1-204ENST00000462475 MED1Q15648 1581 aaPredicted RBP24.97■■□□□ 1.59
COL7A1-204ENST00000462475 ADGRB3O60242 1522 aa24.95■■□□□ 1.58
COL7A1-204ENST00000462475 RPRD2Q5VT52 1461 aaKnown RBP24.91■■□□□ 1.58
COL7A1-204ENST00000462475 SENP3Q9H4L4 574 aaPredicted RBP24.91■■□□□ 1.58
COL7A1-204ENST00000462475 SLC52A1Q9NWF4 448 aa24.89■■□□□ 1.58
COL7A1-204ENST00000462475 XIRP1Q702N8 1843 aaKnown RBP24.89■■□□□ 1.57
COL7A1-204ENST00000462475 TET3O43151 1660 aa24.88■■□□□ 1.57
COL7A1-204ENST00000462475 SLC26A8Q96RN1 970 aa24.87■■□□□ 1.57
COL7A1-204ENST00000462475 UNC13BO14795 1591 aa24.86■■□□□ 1.57
COL7A1-204ENST00000462475 TMEM94Q12767 1356 aa24.84■■□□□ 1.57
COL7A1-204ENST00000462475 KCNA6P17658 529 aa24.83■■□□□ 1.57
COL7A1-204ENST00000462475 ZFYVE9O95405 1425 aa24.82■■□□□ 1.56
COL7A1-204ENST00000462475 ROCK1Q13464 1354 aa24.81■■□□□ 1.56
COL7A1-204ENST00000462475 GCC2Q8IWJ2 1684 aa24.81■■□□□ 1.56
COL7A1-204ENST00000462475 NWD1Q149M9 1564 aa24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms