RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 PPP4R2Q9NY27 417 aa20.54■□□□□ 0.88
LMNB1-203ENST00000460265 KNSTRNQ9Y448 316 aa20.54■□□□□ 0.88
LMNB1-203ENST00000460265 CCDC141Q6ZP82 1450 aa20.53■□□□□ 0.88
LMNB1-203ENST00000460265 IL27Q8NEV9 243 aa20.53■□□□□ 0.88
LMNB1-203ENST00000460265 NUTM2DQ5VT03 806 aaPredicted RBP20.52■□□□□ 0.88
LMNB1-203ENST00000460265 PLEKHH2Q8IVE3 1493 aa20.51■□□□□ 0.87
LMNB1-203ENST00000460265 ZBED9Q6R2W3 1325 aa20.51■□□□□ 0.87
LMNB1-203ENST00000460265 TEX14Q8IWB6 1497 aa20.51■□□□□ 0.87
LMNB1-203ENST00000460265 ITSN2Q9NZM3 1697 aa20.5■□□□□ 0.87
LMNB1-203ENST00000460265 TNNT2P45379 298 aaPredicted RBP20.48■□□□□ 0.87
LMNB1-203ENST00000460265 KDM5BQ9UGL1 1544 aa20.48■□□□□ 0.87
LMNB1-203ENST00000460265 EIF5BO60841 1220 aaKnown RBP20.48■□□□□ 0.87
LMNB1-203ENST00000460265 WDR43Q15061 677 aaKnown RBP eCLIP20.47■□□□□ 0.876e-11■■■□□ 18.3
LMNB1-203ENST00000460265 UBE2Q2Q8WVN8 375 aa20.47■□□□□ 0.87
LMNB1-203ENST00000460265 KTN1Q86UP2 1357 aaKnown RBP20.47■□□□□ 0.87
LMNB1-203ENST00000460265 RALBP1Q15311 655 aa20.46■□□□□ 0.87
LMNB1-203ENST00000460265 SYCP2Q9BX26 1530 aa20.46■□□□□ 0.87
LMNB1-203ENST00000460265 PAK3O75914 559 aaPredicted RBP20.45■□□□□ 0.86
LMNB1-203ENST00000460265 KANK1Q14678 1352 aa20.44■□□□□ 0.86
LMNB1-203ENST00000460265 ABCC10Q5T3U5 1492 aa20.44■□□□□ 0.86
LMNB1-203ENST00000460265 SAFB2Q14151 953 aaKnown RBP eCLIP20.44■□□□□ 0.86
LMNB1-203ENST00000460265 NUDCQ9Y266 331 aa20.44■□□□□ 0.86
LMNB1-203ENST00000460265 MYBBP1AQ9BQG0 1328 aaKnown RBP20.44■□□□□ 0.86
LMNB1-203ENST00000460265 PNISRQ8TF01 805 aaKnown RBP20.43■□□□□ 0.86
LMNB1-203ENST00000460265 NLRP13Q86W25 1043 aa20.43■□□□□ 0.86
LMNB1-203ENST00000460265 SCAPERQ9BY12 1400 aa20.43■□□□□ 0.86
LMNB1-203ENST00000460265 ABCA8O94911 1581 aa20.43■□□□□ 0.86
LMNB1-203ENST00000460265 OSCARQ8IYS5 282 aa20.42■□□□□ 0.86
LMNB1-203ENST00000460265 ERCC6L2Q5T890 1561 aa20.4■□□□□ 0.86
LMNB1-203ENST00000460265 ADGRL2O95490 1459 aa20.4■□□□□ 0.86
LMNB1-203ENST00000460265 MBD5Q9P267 1494 aa20.39■□□□□ 0.85
LMNB1-203ENST00000460265 SPATA31E1Q6ZUB1 1445 aa20.39■□□□□ 0.85
LMNB1-203ENST00000460265 CFAP70Q5T0N1 1121 aa20.39■□□□□ 0.85
LMNB1-203ENST00000460265 NPM2Q86SE8 214 aaKnown RBP20.37■□□□□ 0.85
LMNB1-203ENST00000460265 STAG3Q9UJ98 1225 aa20.37■□□□□ 0.85
LMNB1-203ENST00000460265 TRAK1Q9UPV9 953 aa20.37■□□□□ 0.85
LMNB1-203ENST00000460265 TRAPPC8Q9Y2L5 1435 aa20.37■□□□□ 0.85
LMNB1-203ENST00000460265 NEUROD2Q15784 382 aa20.37■□□□□ 0.85
LMNB1-203ENST00000460265 ARID4BQ4LE39 1312 aaPredicted RBP20.36■□□□□ 0.85
LMNB1-203ENST00000460265 ANP32AP39687 249 aaKnown RBP20.36■□□□□ 0.85
LMNB1-203ENST00000460265 CYB5RLQ6IPT4 315 aa20.36■□□□□ 0.85
LMNB1-203ENST00000460265 ZBTB47Q9UFB7 747 aaPredicted RBP20.36■□□□□ 0.85
LMNB1-203ENST00000460265 CDCA8Q53HL2 280 aa20.35■□□□□ 0.85
LMNB1-203ENST00000460265 CDCA7LQ96GN5 454 aa20.35■□□□□ 0.85
LMNB1-203ENST00000460265 FAM135AQ9P2D6 1515 aa20.34■□□□□ 0.85
LMNB1-203ENST00000460265 WASHC2CQ9Y4E1 1318 aa20.34■□□□□ 0.85
LMNB1-203ENST00000460265 PLPPR3Q6T4P5 718 aa20.34■□□□□ 0.85
LMNB1-203ENST00000460265 PLIN1O60240 522 aa20.33■□□□□ 0.85
LMNB1-203ENST00000460265 CDC42BPAQ5VT25 1732 aa20.33■□□□□ 0.84
LMNB1-203ENST00000460265 CCDC146Q8IYE0 955 aa20.32■□□□□ 0.84
LMNB1-203ENST00000460265 STK26Q9P289 416 aa20.32■□□□□ 0.84
LMNB1-203ENST00000460265 RAPGEF3O95398 923 aa20.32■□□□□ 0.84
LMNB1-203ENST00000460265 RCAN3Q9UKA8 241 aa20.32■□□□□ 0.84
LMNB1-203ENST00000460265 DHX29Q7Z478 1369 aaKnown RBP20.31■□□□□ 0.84
LMNB1-203ENST00000460265 TMEM132EQ6IEE7 984 aa20.3■□□□□ 0.84
LMNB1-203ENST00000460265 PLCH2O75038 1416 aa20.3■□□□□ 0.84
LMNB1-203ENST00000460265 MLECQ14165 292 aa20.3■□□□□ 0.84
LMNB1-203ENST00000460265 CHD1O14646 1710 aa20.3■□□□□ 0.84
LMNB1-203ENST00000460265 SHANK2Q9UPX8 1470 aa20.29■□□□□ 0.84
LMNB1-203ENST00000460265 DISP3Q9P2K9 1392 aa20.28■□□□□ 0.84
LMNB1-203ENST00000460265 SAMD9LQ8IVG5 1584 aa20.27■□□□□ 0.84
LMNB1-203ENST00000460265 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.27■□□□□ 0.841e-6■□□□□ 10.8
LMNB1-203ENST00000460265 ADGBQ8N7X0 1667 aa20.27■□□□□ 0.84
LMNB1-203ENST00000460265 RALGAPBQ86X10 1494 aa20.26■□□□□ 0.83
LMNB1-203ENST00000460265 ADAMTS8Q9UP79 889 aa20.26■□□□□ 0.83
LMNB1-203ENST00000460265 ABCC2Q92887 1545 aa20.25■□□□□ 0.83
LMNB1-203ENST00000460265 EXOC6Q8TAG9 804 aa20.25■□□□□ 0.83
LMNB1-203ENST00000460265 TTC37Q6PGP7 1564 aa20.24■□□□□ 0.83
LMNB1-203ENST00000460265 TESK2Q96S53 571 aa20.24■□□□□ 0.83
LMNB1-203ENST00000460265 PRAG1Q86YV5 1406 aa20.24■□□□□ 0.83
LMNB1-203ENST00000460265 CANXP27824 592 aaKnown RBP20.24■□□□□ 0.83
LMNB1-203ENST00000460265 IPO9Q96P70 1041 aaKnown RBP20.23■□□□□ 0.83
LMNB1-203ENST00000460265 BRD4O60885 1362 aaPredicted RBP20.23■□□□□ 0.83
LMNB1-203ENST00000460265 ERBINQ96RT1 1412 aa20.22■□□□□ 0.83
LMNB1-203ENST00000460265 FANCAO15360 1455 aa20.21■□□□□ 0.83
LMNB1-203ENST00000460265 ADGRF5Q8IZF2 1346 aa20.21■□□□□ 0.83
LMNB1-203ENST00000460265 ARHGEF12Q9NZN5 1544 aa20.2■□□□□ 0.82
LMNB1-203ENST00000460265 UHRF1BP1Q6BDS2 1440 aa20.19■□□□□ 0.82
LMNB1-203ENST00000460265 ADCY10Q96PN6 1610 aa20.19■□□□□ 0.82
LMNB1-203ENST00000460265 A2MP01023 1474 aa20.18■□□□□ 0.82
LMNB1-203ENST00000460265 ADGRL1O94910 1474 aa20.18■□□□□ 0.82
LMNB1-203ENST00000460265 MORC1Q86VD1 984 aa20.18■□□□□ 0.82
LMNB1-203ENST00000460265 PER1O15534 1290 aaPredicted RBP20.17■□□□□ 0.82
LMNB1-203ENST00000460265 RRP1P56182 461 aaKnown RBP20.17■□□□□ 0.82
LMNB1-203ENST00000460265 PLA2R1Q13018 1463 aa20.16■□□□□ 0.82
LMNB1-203ENST00000460265 NEFMP07197 916 aa20.16■□□□□ 0.82
LMNB1-203ENST00000460265 PPP2R1AP30153 589 aa20.16■□□□□ 0.82
LMNB1-203ENST00000460265 BCORL1Q5H9F3 1711 aa20.16■□□□□ 0.82
LMNB1-203ENST00000460265 SRPK2P78362 688 aaKnown RBP20.15■□□□□ 0.82
LMNB1-203ENST00000460265 ESF1Q9H501 851 aaKnown RBP20.15■□□□□ 0.82
LMNB1-203ENST00000460265 LAS1LQ9Y4W2 734 aaKnown RBP20.15■□□□□ 0.82
LMNB1-203ENST00000460265 APAF1O14727 1248 aa20.15■□□□□ 0.82
LMNB1-203ENST00000460265 CDC42BPBQ9Y5S2 1711 aa20.15■□□□□ 0.82
LMNB1-203ENST00000460265 DUOX2Q9NRD8 1548 aa20.14■□□□□ 0.81
LMNB1-203ENST00000460265 POGKQ9P215 609 aa20.14■□□□□ 0.81
LMNB1-203ENST00000460265 PPM1GO15355 546 aaPredicted RBP20.14■□□□□ 0.81
LMNB1-203ENST00000460265 SLC12A5Q9H2X9 1139 aa20.14■□□□□ 0.81
LMNB1-203ENST00000460265 RRP7AQ9Y3A4 280 aaKnown RBP20.14■□□□□ 0.81
LMNB1-203ENST00000460265 ARHGEF5Q12774 1597 aa20.14■□□□□ 0.81
LMNB1-203ENST00000460265 EIF3AQ14152 1382 aaKnown RBP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms