RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 TSPY10P0CW01 314 aa35.93■■■■□ 3.34
PTPN4-207ENST00000460162 CERKQ8TCT0 537 aa35.92■■■■□ 3.34
PTPN4-207ENST00000460162 KIF3BO15066 747 aa35.9■■■■□ 3.34
PTPN4-207ENST00000460162 RNF17Q9BXT8 1623 aaKnown RBP35.88■■■■□ 3.33
PTPN4-207ENST00000460162 EIF2AK4Q9P2K8 1649 aaKnown RBP35.88■■■■□ 3.33
PTPN4-207ENST00000460162 PLA2R1Q13018 1463 aa35.87■■■■□ 3.33
PTPN4-207ENST00000460162 PZPP20742 1482 aa35.86■■■■□ 3.33
PTPN4-207ENST00000460162 CROCC2H7BZ55 1655 aa35.84■■■■□ 3.33
PTPN4-207ENST00000460162 APLP2Q06481 763 aa35.83■■■■□ 3.33
PTPN4-207ENST00000460162 ZC3H13Q5T200 1668 aaKnown RBP35.83■■■■□ 3.33
PTPN4-207ENST00000460162 PTPN23Q9H3S7 1636 aa35.81■■■■□ 3.32
PTPN4-207ENST00000460162 A2ML1A8K2U0 1454 aa35.8■■■■□ 3.32
PTPN4-207ENST00000460162 SHANK2Q9UPX8 1470 aa35.79■■■■□ 3.32
PTPN4-207ENST00000460162 TCOF1Q13428 1488 aaKnown RBP35.78■■■■□ 3.32
PTPN4-207ENST00000460162 DNMT1P26358 1616 aaKnown RBP35.77■■■■□ 3.32
PTPN4-207ENST00000460162 WASHC2CQ9Y4E1 1318 aa35.76■■■■□ 3.31
PTPN4-207ENST00000460162 LTBP4Q8N2S1 1624 aa35.75■■■■□ 3.31
PTPN4-207ENST00000460162 DUOX2Q9NRD8 1548 aa35.74■■■■□ 3.31
PTPN4-207ENST00000460162 TNRQ92752 1358 aa35.74■■■■□ 3.31
PTPN4-207ENST00000460162 MROH1Q8NDA8 1641 aa35.73■■■■□ 3.31
PTPN4-207ENST00000460162 ABCC3O15438 1527 aa35.73■■■■□ 3.31
PTPN4-207ENST00000460162 PKD2Q13563 968 aa35.7■■■■□ 3.31
PTPN4-207ENST00000460162 FGD6Q6ZV73 1430 aa35.7■■■■□ 3.31
PTPN4-207ENST00000460162 POLR1AO95602 1720 aaPredicted RBP35.68■■■■□ 3.3
PTPN4-207ENST00000460162 ABCC5O15440 1437 aa35.67■■■■□ 3.3
PTPN4-207ENST00000460162 IQSEC2Q5JU85 1478 aa35.67■■■■□ 3.3
PTPN4-207ENST00000460162 NCKAP5LQ9HCH0 1330 aa35.66■■■■□ 3.3
PTPN4-207ENST00000460162 NLRP1Q9C000 1473 aa35.66■■■■□ 3.3
PTPN4-207ENST00000460162 FBXO31Q5XUX0 539 aaPredicted RBP35.65■■■■□ 3.3
PTPN4-207ENST00000460162 DAPK1P53355 1430 aa35.65■■■■□ 3.3
PTPN4-207ENST00000460162 CEP152O94986 1710 aa35.64■■■■□ 3.3
PTPN4-207ENST00000460162 ERBINQ96RT1 1412 aa35.64■■■■□ 3.3
PTPN4-207ENST00000460162 PRDM15P57071 1507 aaPredicted RBP35.63■■■■□ 3.29
PTPN4-207ENST00000460162 SPATA31D1Q6ZQQ2 1576 aa35.63■■■■□ 3.29
PTPN4-207ENST00000460162 KIF15Q9NS87 1388 aa35.63■■■■□ 3.29
PTPN4-207ENST00000460162 NEURL4Q96JN8 1562 aa35.57■■■■□ 3.28
PTPN4-207ENST00000460162 DEPDC5O75140 1603 aa35.57■■■■□ 3.28
PTPN4-207ENST00000460162 UGGT1Q9NYU2 1555 aa35.56■■■■□ 3.28
PTPN4-207ENST00000460162 ERVK-7P63135 1459 aa35.55■■■■□ 3.28
PTPN4-207ENST00000460162 ZNF335Q9H4Z2 1342 aaPredicted RBP35.5■■■■□ 3.27
PTPN4-207ENST00000460162 RRP7BPQ9NSQ0 103 aa35.47■■■■□ 3.27
PTPN4-207ENST00000460162 ANKRD30AQ9BXX3 1397 aa35.47■■■■□ 3.27
PTPN4-207ENST00000460162 THEMISQ8N1K5 641 aaPredicted RBP35.45■■■■□ 3.27
PTPN4-207ENST00000460162 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.45■■■■□ 3.27
PTPN4-207ENST00000460162 ARHGAP31Q2M1Z3 1444 aa35.45■■■■□ 3.27
PTPN4-207ENST00000460162 ADGRL2O95490 1459 aa35.44■■■■□ 3.26
PTPN4-207ENST00000460162 MED14O60244 1454 aa35.41■■■■□ 3.26
PTPN4-207ENST00000460162 UBR1Q8IWV7 1749 aa35.4■■■■□ 3.26
PTPN4-207ENST00000460162 CFAP65Q6ZU64 1925 aaKnown RBP35.4■■■■□ 3.26
PTPN4-207ENST00000460162 ANKLE2Q86XL3 938 aa35.39■■■■□ 3.26
PTPN4-207ENST00000460162 VWDEQ8N2E2 1590 aa35.38■■■■□ 3.25
PTPN4-207ENST00000460162 KANK1Q14678 1352 aa35.38■■■■□ 3.25
PTPN4-207ENST00000460162 LMTK2Q8IWU2 1503 aa35.37■■■■□ 3.25
PTPN4-207ENST00000460162 IQGAP1P46940 1657 aa35.37■■■■□ 3.25
PTPN4-207ENST00000460162 CPS1P31327 1500 aa35.36■■■■□ 3.25
PTPN4-207ENST00000460162 NPHP4O75161 1426 aaPredicted RBP35.35■■■■□ 3.25
PTPN4-207ENST00000460162 CHIC2Q9UKJ5 165 aa35.34■■■■□ 3.25
PTPN4-207ENST00000460162 FAM50AQ14320 339 aaKnown RBP35.28■■■■□ 3.24
PTPN4-207ENST00000460162 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.28■■■■□ 3.242e-6■□□□□ 8.8
PTPN4-207ENST00000460162 EFCAB6Q5THR3 1501 aa35.27■■■■□ 3.24
PTPN4-207ENST00000460162 PIK3C2BO00750 1634 aa35.25■■■■□ 3.23
PTPN4-207ENST00000460162 KDM5AP29375 1690 aaKnown RBP35.25■■■■□ 3.23
PTPN4-207ENST00000460162 SLIT1O75093 1534 aa35.25■■■■□ 3.23
PTPN4-207ENST00000460162 ARHGAP23Q9P227 1491 aa35.23■■■■□ 3.23
PTPN4-207ENST00000460162 SCAF11Q99590 1463 aaKnown RBP35.22■■■■□ 3.23
PTPN4-207ENST00000460162 ANKRD50Q9ULJ7 1429 aa35.22■■■■□ 3.23
PTPN4-207ENST00000460162 UBAP1LF5GYI3 381 aa35.19■■■■□ 3.22
PTPN4-207ENST00000460162 SYNMO15061 1565 aa35.18■■■■□ 3.22
PTPN4-207ENST00000460162 UNC13BO14795 1591 aa35.15■■■■□ 3.22
PTPN4-207ENST00000460162 RPRD2Q5VT52 1461 aaKnown RBP35.14■■■■□ 3.22
PTPN4-207ENST00000460162 TET3O43151 1660 aa35.14■■■■□ 3.22
PTPN4-207ENST00000460162 NOS1P29475 1434 aa35.14■■■■□ 3.22
PTPN4-207ENST00000460162 STRCP1A6NGW2 1772 aa35.13■■■■□ 3.21
PTPN4-207ENST00000460162 GCC2Q8IWJ2 1684 aa35.1■■■■□ 3.21
PTPN4-207ENST00000460162 ROCK1Q13464 1354 aa35.1■■■■□ 3.21
PTPN4-207ENST00000460162 ADGRB3O60242 1522 aa35.09■■■■□ 3.21
PTPN4-207ENST00000460162 TMEM2Q9UHN6 1383 aa35.08■■■■□ 3.21
PTPN4-207ENST00000460162 LTKP29376 864 aa35.04■■■■□ 3.2
PTPN4-207ENST00000460162 TXNDC2Q86VQ3 553 aa35.04■■■■□ 3.2
PTPN4-207ENST00000460162 STAG3Q9UJ98 1225 aa35.03■■■■□ 3.2
PTPN4-207ENST00000460162 EID1Q9Y6B2 187 aa35.03■■■■□ 3.2
PTPN4-207ENST00000460162 LRRC7Q96NW7 1537 aa35.02■■■■□ 3.2
PTPN4-207ENST00000460162 IDI1Q13907 227 aa35.01■■■■□ 3.2
PTPN4-207ENST00000460162 IQGAP3Q86VI3 1631 aa35■■■■□ 3.19
PTPN4-207ENST00000460162 TOM1O60784 492 aa35■■■■□ 3.19
PTPN4-207ENST00000460162 DISP3Q9P2K9 1392 aa35■■■■□ 3.19
PTPN4-207ENST00000460162 ALKQ9UM73 1620 aa34.97■■■■□ 3.19
PTPN4-207ENST00000460162 SLC52A1Q9NWF4 448 aa34.97■■■■□ 3.19
PTPN4-207ENST00000460162 E9PCH4 1651 aa34.95■■■■□ 3.18
PTPN4-207ENST00000460162 MYO5BQ9ULV0 1848 aa34.91■■■■□ 3.18
PTPN4-207ENST00000460162 SCAF1Q9H7N4 1312 aaKnown RBP34.9■■■■□ 3.18
PTPN4-207ENST00000460162 PIP4K2BP78356 416 aa34.88■■■■□ 3.17
PTPN4-207ENST00000460162 TMEM131LA2VDJ0 1609 aa34.88■■■■□ 3.17
PTPN4-207ENST00000460162 XIRP1Q702N8 1843 aaKnown RBP34.88■■■■□ 3.17
PTPN4-207ENST00000460162 PPARGC1BQ86YN6 1023 aaKnown RBP34.85■■■■□ 3.17
PTPN4-207ENST00000460162 ZFYVE9O95405 1425 aa34.83■■■■□ 3.17
PTPN4-207ENST00000460162 RRBP1Q9P2E9 1410 aaKnown RBP34.82■■■■□ 3.17
PTPN4-207ENST00000460162 ITGAEP38570 1179 aa34.82■■■■□ 3.16
PTPN4-207ENST00000460162 NWD1Q149M9 1564 aa34.81■■■■□ 3.16
PTPN4-207ENST00000460162 HSPA1LP34931 641 aa34.8■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms