RNA–Protein interactions for RNA: ENST00000460064.1

CCDC50-203, Transcript of coiled-coil domain containing 50, humanhuman

TSL 2

Gene CCDC50, Length 420 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-203ENST00000460064 JPH4Q96JJ6 628 aa11.22□□□□□ -0.61
CCDC50-203ENST00000460064 NUDT7P0C024 238 aa11.21□□□□□ -0.61
CCDC50-203ENST00000460064 AMHR2Q16671 573 aa11.21□□□□□ -0.61
CCDC50-203ENST00000460064 KHSRPQ92945 711 aaKnown RBP eCLIP11.21□□□□□ -0.61
CCDC50-203ENST00000460064 HOXB3P14651 431 aaPredicted RBP11.2□□□□□ -0.62
CCDC50-203ENST00000460064 MAMSTRQ6ZN01 415 aa11.2□□□□□ -0.62
CCDC50-203ENST00000460064 FOSBP53539 338 aa11.19□□□□□ -0.62
CCDC50-203ENST00000460064 ZNF710Q8N1W2 664 aa11.19□□□□□ -0.62
CCDC50-203ENST00000460064 ZNF454Q8N9F8 522 aa11.19□□□□□ -0.62
CCDC50-203ENST00000460064 ZDHHC16Q969W1 377 aa11.18□□□□□ -0.62
CCDC50-203ENST00000460064 ZSWIM6Q9HCJ5 1215 aa11.18□□□□□ -0.62
CCDC50-203ENST00000460064 TTLL12Q14166 644 aaPredicted RBP11.17□□□□□ -0.62
CCDC50-203ENST00000460064 C6orf132Q5T0Z8 1188 aa11.17□□□□□ -0.62
CCDC50-203ENST00000460064 FAM117AQ9C073 453 aa11.17□□□□□ -0.62
CCDC50-203ENST00000460064 GPR153Q6NV75 609 aa11.16□□□□□ -0.62
CCDC50-203ENST00000460064 PARP9Q8IXQ6 854 aa11.16□□□□□ -0.62
CCDC50-203ENST00000460064 C14orf37Q86TY3 774 aa11.14□□□□□ -0.63
CCDC50-203ENST00000460064 CERKQ8TCT0 537 aa11.14□□□□□ -0.63
CCDC50-203ENST00000460064 DDRGK1Q96HY6 314 aa11.13□□□□□ -0.63
CCDC50-203ENST00000460064 ADAM33Q9BZ11 813 aa11.11□□□□□ -0.63
CCDC50-203ENST00000460064 LHX6Q9UPM6 363 aa11.1□□□□□ -0.63
CCDC50-203ENST00000460064 FAM161AQ3B820 660 aa11.09□□□□□ -0.63
CCDC50-203ENST00000460064 GIGYF2Q6Y7W6 1299 aaKnown RBP11.09□□□□□ -0.63
CCDC50-203ENST00000460064 SNPHO15079 494 aa11.08□□□□□ -0.64
CCDC50-203ENST00000460064 OATP04181 439 aa11.08□□□□□ -0.64
CCDC50-203ENST00000460064 PADI6Q6TGC4 694 aa11.08□□□□□ -0.64
CCDC50-203ENST00000460064 REPIN1Q9BWE0 567 aaKnown RBP11.08□□□□□ -0.64
CCDC50-203ENST00000460064 PLEKHG3A1L390 1219 aa11.07□□□□□ -0.64
CCDC50-203ENST00000460064 CLCN1P35523 988 aa11.07□□□□□ -0.64
CCDC50-203ENST00000460064 MDM2Q00987 491 aaPredicted RBP11.07□□□□□ -0.64
CCDC50-203ENST00000460064 PPP4R3BQ5MIZ7 849 aa11.07□□□□□ -0.64
CCDC50-203ENST00000460064 PHOX2BQ99453 314 aa11.07□□□□□ -0.64
CCDC50-203ENST00000460064 PSDA5PKW4 1024 aaPredicted RBP11.05□□□□□ -0.64
CCDC50-203ENST00000460064 MS4A1P11836 297 aa11.05□□□□□ -0.64
CCDC50-203ENST00000460064 PRSS12P56730 875 aa11.05□□□□□ -0.64
CCDC50-203ENST00000460064 GPCPD1Q9NPB8 672 aa11.05□□□□□ -0.64
CCDC50-203ENST00000460064 METTL3Q86U44 580 aaKnown RBP11.04□□□□□ -0.64
CCDC50-203ENST00000460064 CDCA7LQ96GN5 454 aa11.04□□□□□ -0.64
CCDC50-203ENST00000460064 RBM27Q9P2N5 1060 aaKnown RBP11.03□□□□□ -0.64
CCDC50-203ENST00000460064 ADGRG1Q9Y653 693 aa11.03□□□□□ -0.64
CCDC50-203ENST00000460064 SSTR3P32745 418 aaPredicted RBP11.02□□□□□ -0.65
CCDC50-203ENST00000460064 TTC13Q8NBP0 860 aa11.02□□□□□ -0.65
CCDC50-203ENST00000460064 TMUB1Q9BVT8 246 aa11.02□□□□□ -0.65
CCDC50-203ENST00000460064 HOXB1P14653 301 aaPredicted RBP11.01□□□□□ -0.65
CCDC50-203ENST00000460064 PXYLP1Q8TE99 480 aa11.01□□□□□ -0.65
CCDC50-203ENST00000460064 BCL2L12Q9HB09 334 aa11.01□□□□□ -0.65
CCDC50-203ENST00000460064 COL9A1P20849 921 aa11□□□□□ -0.65
CCDC50-203ENST00000460064 PTPREP23469 700 aa11□□□□□ -0.65
CCDC50-203ENST00000460064 RBM46Q8TBY0 533 aaKnown RBP11□□□□□ -0.65
CCDC50-203ENST00000460064 NLRP7Q8WX94 980 aa11□□□□□ -0.65
CCDC50-203ENST00000460064 GOPCQ9HD26 462 aa10.97□□□□□ -0.65
CCDC50-203ENST00000460064 OTUD5Q96G74 571 aa10.96□□□□□ -0.65
CCDC50-203ENST00000460064 PPP1R3GB7ZBB8 358 aa10.95□□□□□ -0.66
CCDC50-203ENST00000460064 BEGAINQ9BUH8 593 aa10.95□□□□□ -0.66
CCDC50-203ENST00000460064 FAM217BQ9NTX9 383 aaPredicted RBP10.95□□□□□ -0.66
CCDC50-203ENST00000460064 FAM198AQ9UFP1 575 aa10.95□□□□□ -0.66
CCDC50-203ENST00000460064 PCMTD1Q96MG8 357 aaPredicted RBP10.94□□□□□ -0.66
CCDC50-203ENST00000460064 TSKSQ9UJT2 592 aa10.94□□□□□ -0.66
CCDC50-203ENST00000460064 RSPH6AQ9H0K4 717 aa10.93□□□□□ -0.66
CCDC50-203ENST00000460064 NUDT18Q6ZVK8 323 aa10.92□□□□□ -0.66
CCDC50-203ENST00000460064 ATP1B4Q9UN42 357 aaPredicted RBP10.92□□□□□ -0.66
CCDC50-203ENST00000460064 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.91□□□□□ -0.66
CCDC50-203ENST00000460064 RCCD1A6NED2 376 aa10.91□□□□□ -0.66
CCDC50-203ENST00000460064 PACS2Q86VP3 889 aa10.91□□□□□ -0.66
CCDC50-203ENST00000460064 KCNH8Q96L42 1107 aa10.91□□□□□ -0.66
CCDC50-203ENST00000460064 EYA1Q99502 592 aa10.91□□□□□ -0.66
CCDC50-203ENST00000460064 TRIM6-TRIM34B2RNG4 842 aa10.9□□□□□ -0.66
CCDC50-203ENST00000460064 SH3D19Q5HYK7 790 aa10.9□□□□□ -0.66
CCDC50-203ENST00000460064 TATDN2Q93075 761 aa10.9□□□□□ -0.66
CCDC50-203ENST00000460064 KCNK17Q96T54 332 aa10.9□□□□□ -0.66
CCDC50-203ENST00000460064 PNMA3Q9UL41 463 aa10.9□□□□□ -0.66
CCDC50-203ENST00000460064 NBPF26B4DH59 902 aa10.88□□□□□ -0.67
CCDC50-203ENST00000460064 SKIV2LQ15477 1246 aaKnown RBP10.88□□□□□ -0.67
CCDC50-203ENST00000460064 PROX2Q3B8N5 592 aa10.87□□□□□ -0.67
CCDC50-203ENST00000460064 LHX8Q68G74 356 aa10.87□□□□□ -0.67
CCDC50-203ENST00000460064 ERBB3P21860 1342 aa10.86□□□□□ -0.67
CCDC50-203ENST00000460064 C3orf80F5H4A9 247 aa10.86□□□□□ -0.67
CCDC50-203ENST00000460064 POLR3EQ9NVU0 708 aa10.86□□□□□ -0.67
CCDC50-203ENST00000460064 ONECUT3O60422 494 aaPredicted RBP10.85□□□□□ -0.67
CCDC50-203ENST00000460064 DNAJB2P25686 324 aa10.85□□□□□ -0.67
CCDC50-203ENST00000460064 SMAPO00193 183 aa10.84□□□□□ -0.67
CCDC50-203ENST00000460064 SUPT5HO00267 1087 aaKnown RBP10.84□□□□□ -0.67
CCDC50-203ENST00000460064 ZMYND15Q9H091 742 aa10.84□□□□□ -0.67
CCDC50-203ENST00000460064 PSEN2P49810 448 aa10.83□□□□□ -0.68
CCDC50-203ENST00000460064 DIXDC1Q155Q3 683 aa10.83□□□□□ -0.68
CCDC50-203ENST00000460064 PROCA1Q8NCQ7 364 aaPredicted RBP10.83□□□□□ -0.68
CCDC50-203ENST00000460064 KIAA1468Q9P260 1216 aa10.83□□□□□ -0.68
CCDC50-203ENST00000460064 DDX11L8A8MPP1 907 aa10.82□□□□□ -0.68
CCDC50-203ENST00000460064 FLIIQ13045 1269 aa10.82□□□□□ -0.68
CCDC50-203ENST00000460064 VARS2Q5ST30 1063 aaKnown RBP10.82□□□□□ -0.68
CCDC50-203ENST00000460064 MYSM1Q5VVJ2 828 aa10.82□□□□□ -0.68
CCDC50-203ENST00000460064 SULF1Q8IWU6 871 aa10.82□□□□□ -0.68
CCDC50-203ENST00000460064 TBC1D2Q9BYX2 928 aa10.82□□□□□ -0.68
CCDC50-203ENST00000460064 ARHGAP33O14559 1287 aa10.81□□□□□ -0.68
CCDC50-203ENST00000460064 ZBED2Q9BTP6 218 aa10.81□□□□□ -0.68
CCDC50-203ENST00000460064 CD46P15529 392 aa10.8□□□□□ -0.68
CCDC50-203ENST00000460064 TMEM134Q9H6X4 195 aa10.8□□□□□ -0.68
CCDC50-203ENST00000460064 ST18O60284 1047 aa10.78□□□□□ -0.68
CCDC50-203ENST00000460064 NUTM1Q86Y26 1132 aa10.78□□□□□ -0.68
CCDC50-203ENST00000460064 SPIRE2Q8WWL2 714 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms