RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 CCDC191Q8NCU4 936 aa6.42□□□□□ -1.38
CSMD3-204ENST00000455883 AK7Q96M32 723 aa6.42□□□□□ -1.38
CSMD3-204ENST00000455883 HSP90B2PQ58FF3 399 aa6.42□□□□□ -1.38
CSMD3-204ENST00000455883 U2SURPO15042 1029 aaKnown RBP6.42□□□□□ -1.38
CSMD3-204ENST00000455883 NLRP13Q86W25 1043 aa6.42□□□□□ -1.38
CSMD3-204ENST00000455883 PLEKHD1A6NEE1 506 aa6.41□□□□□ -1.38
CSMD3-204ENST00000455883 TUBB4BP68371 445 aa6.41□□□□□ -1.38
CSMD3-204ENST00000455883 NEXNQ0ZGT2 675 aa6.41□□□□□ -1.38
CSMD3-204ENST00000455883 SPAG9O60271 1321 aaKnown RBP6.41□□□□□ -1.38
CSMD3-204ENST00000455883 MBD3O95983 291 aa6.41□□□□□ -1.38
CSMD3-204ENST00000455883 IQCEQ6IPM2 695 aa6.41□□□□□ -1.38
CSMD3-204ENST00000455883 ZRSR2Q15696 482 aaKnown RBP6.41□□□□□ -1.38
CSMD3-204ENST00000455883 MYH9P35579 1960 aaKnown RBP6.41□□□□□ -1.38
CSMD3-204ENST00000455883 FAM184AQ8NB25 1140 aa6.41□□□□□ -1.38
CSMD3-204ENST00000455883 RRP9O43818 475 aaKnown RBP6.41□□□□□ -1.38
CSMD3-204ENST00000455883 DEKP35659 375 aaKnown RBP6.41□□□□□ -1.38
CSMD3-204ENST00000455883 PIP4K2AP48426 406 aaPredicted RBP6.41□□□□□ -1.38
CSMD3-204ENST00000455883 GNL2Q13823 731 aaKnown RBP6.41□□□□□ -1.38
CSMD3-204ENST00000455883 CAVIN2O95810 425 aa6.41□□□□□ -1.38
CSMD3-204ENST00000455883 CCDC144AA2RUR9 1427 aa6.4□□□□□ -1.38
CSMD3-204ENST00000455883 NUCB2P80303 420 aa6.4□□□□□ -1.38
CSMD3-204ENST00000455883 PDCP20941 246 aa6.4□□□□□ -1.38
CSMD3-204ENST00000455883 RNF20Q5VTR2 975 aa6.4□□□□□ -1.38
CSMD3-204ENST00000455883 CEP89Q96ST8 783 aa6.4□□□□□ -1.39
CSMD3-204ENST00000455883 LUC7LQ9NQ29 371 aaKnown RBP6.4□□□□□ -1.39
CSMD3-204ENST00000455883 SUPT16HQ9Y5B9 1047 aaKnown RBP6.39□□□□□ -1.39
CSMD3-204ENST00000455883 FEZ1Q99689 392 aa6.39□□□□□ -1.39
CSMD3-204ENST00000455883 RRP12Q5JTH9 1297 aaKnown RBP6.39□□□□□ -1.39
CSMD3-204ENST00000455883 CT47B1P0C2W7 299 aaPredicted RBP6.39□□□□□ -1.39
CSMD3-204ENST00000455883 GSE1Q14687 1217 aa6.39□□□□□ -1.39
CSMD3-204ENST00000455883 GOLGA2Q08379 1002 aa6.39□□□□□ -1.39
CSMD3-204ENST00000455883 GOLGA6L19H0YKK7 550 aa6.38□□□□□ -1.39
CSMD3-204ENST00000455883 CPLX2Q6PUV4 134 aaKnown RBP6.38□□□□□ -1.39
CSMD3-204ENST00000455883 SMARCA4P51532 1647 aa6.38□□□□□ -1.39
CSMD3-204ENST00000455883 ATAD2Q6PL18 1390 aa6.38□□□□□ -1.39
CSMD3-204ENST00000455883 DHX29Q7Z478 1369 aaKnown RBP6.38□□□□□ -1.39
CSMD3-204ENST00000455883 MIER1Q8N108 512 aa6.38□□□□□ -1.39
CSMD3-204ENST00000455883 ANKRD12Q6UB98 2062 aa6.38□□□□□ -1.39
CSMD3-204ENST00000455883 KNL1Q8NG31 2342 aa6.38□□□□□ -1.39
CSMD3-204ENST00000455883 MCM3P25205 808 aa6.38□□□□□ -1.39
CSMD3-204ENST00000455883 CARD11Q9BXL7 1154 aa6.38□□□□□ -1.39
CSMD3-204ENST00000455883 ITSN2Q9NZM3 1697 aa6.38□□□□□ -1.39
CSMD3-204ENST00000455883 POLA1P09884 1462 aaPredicted RBP6.38□□□□□ -1.39
CSMD3-204ENST00000455883 MNS1Q8NEH6 495 aa6.37□□□□□ -1.39
CSMD3-204ENST00000455883 CUL7Q14999 1698 aa6.37□□□□□ -1.39
CSMD3-204ENST00000455883 AEBP1Q8IUX7 1158 aa6.37□□□□□ -1.39
CSMD3-204ENST00000455883 CCDC173Q0VFZ6 552 aa6.37□□□□□ -1.39
CSMD3-204ENST00000455883 RBM19Q9Y4C8 960 aaKnown RBP6.37□□□□□ -1.39
CSMD3-204ENST00000455883 RABEP1Q15276 862 aa6.37□□□□□ -1.39
CSMD3-204ENST00000455883 TUBB4AP04350 444 aa6.37□□□□□ -1.39
CSMD3-204ENST00000455883 RUFY2Q8WXA3 655 aa6.37□□□□□ -1.39
CSMD3-204ENST00000455883 RCAN3Q9UKA8 241 aa6.36□□□□□ -1.39
CSMD3-204ENST00000455883 DAPK1P53355 1430 aa6.36□□□□□ -1.39
CSMD3-204ENST00000455883 MICAL3Q7RTP6 2002 aa6.36□□□□□ -1.39
CSMD3-204ENST00000455883 ZNF428Q96B54 188 aa6.36□□□□□ -1.39
CSMD3-204ENST00000455883 CFDP1Q9UEE9 299 aaPredicted RBP6.36□□□□□ -1.39
CSMD3-204ENST00000455883 SH3BGRP55822 239 aaPredicted RBP6.36□□□□□ -1.39
CSMD3-204ENST00000455883 CCDC47Q96A33 483 aaKnown RBP6.36□□□□□ -1.39
CSMD3-204ENST00000455883 DEF6Q9H4E7 631 aa6.36□□□□□ -1.39
CSMD3-204ENST00000455883 SMC4Q9NTJ3 1288 aa6.36□□□□□ -1.39
CSMD3-204ENST00000455883 MRE11P49959 708 aa6.36□□□□□ -1.39
CSMD3-204ENST00000455883 IRX6P78412 446 aaPredicted RBP6.35□□□□□ -1.39
CSMD3-204ENST00000455883 E9PSI1 815 aa6.35□□□□□ -1.39
CSMD3-204ENST00000455883 RUFY1Q96T51 708 aa6.35□□□□□ -1.39
CSMD3-204ENST00000455883 CENPJQ9HC77 1338 aaPredicted RBP6.35□□□□□ -1.39
CSMD3-204ENST00000455883 FAM161AQ3B820 660 aa6.35□□□□□ -1.39
CSMD3-204ENST00000455883 EIF3JO75822 258 aaKnown RBP6.35□□□□□ -1.39
CSMD3-204ENST00000455883 BAZ2BQ9UIF8 2168 aaKnown RBP6.35□□□□□ -1.39
CSMD3-204ENST00000455883 BCL11BQ9C0K0 894 aaPredicted RBP6.35□□□□□ -1.39
CSMD3-204ENST00000455883 GOLGA6L10A0A0M3HER8 536 aa6.35□□□□□ -1.39
CSMD3-204ENST00000455883 OS9Q13438 667 aaPredicted RBP6.35□□□□□ -1.39
CSMD3-204ENST00000455883 CCDC88BA6NC98 1476 aa6.35□□□□□ -1.39
CSMD3-204ENST00000455883 PLEKHG5O94827 1062 aa6.35□□□□□ -1.39
CSMD3-204ENST00000455883 FAM43AQ8N2R8 423 aa6.35□□□□□ -1.39
CSMD3-204ENST00000455883 CCDC39Q9UFE4 941 aa6.35□□□□□ -1.39
CSMD3-204ENST00000455883 MCM5P33992 734 aa6.34□□□□□ -1.39
CSMD3-204ENST00000455883 TERF2IPQ9NYB0 399 aa6.34□□□□□ -1.39
CSMD3-204ENST00000455883 CIZ1Q9ULV3 898 aaPredicted RBP6.34□□□□□ -1.39
CSMD3-204ENST00000455883 GBP2P32456 591 aaPredicted RBP6.34□□□□□ -1.39
CSMD3-204ENST00000455883 RRBP1Q9P2E9 1410 aaKnown RBP6.34□□□□□ -1.39
CSMD3-204ENST00000455883 NF2P35240 595 aa6.34□□□□□ -1.39
CSMD3-204ENST00000455883 CTR9Q6PD62 1173 aa6.34□□□□□ -1.39
CSMD3-204ENST00000455883 PPP1R15AO75807 674 aaPredicted RBP6.34□□□□□ -1.39
CSMD3-204ENST00000455883 ANKRD18AQ8IVF6 992 aa6.34□□□□□ -1.39
CSMD3-204ENST00000455883 MYH11P35749 1972 aa6.34□□□□□ -1.4
CSMD3-204ENST00000455883 PLEKHH1Q9ULM0 1364 aa6.33□□□□□ -1.4
CSMD3-204ENST00000455883 HECW1Q76N89 1606 aa6.33□□□□□ -1.4
CSMD3-204ENST00000455883 MYO9BQ13459 2157 aa6.33□□□□□ -1.4
CSMD3-204ENST00000455883 MAP3K1Q13233 1512 aa6.33□□□□□ -1.4
CSMD3-204ENST00000455883 ZKSCAN1P17029 563 aaPredicted RBP6.33□□□□□ -1.4
CSMD3-204ENST00000455883 PDS5BQ9NTI5 1447 aa6.33□□□□□ -1.4
CSMD3-204ENST00000455883 NOL10Q9BSC4 688 aaKnown RBP6.33□□□□□ -1.4
CSMD3-204ENST00000455883 STK31Q9BXU1 1019 aa6.33□□□□□ -1.4
CSMD3-204ENST00000455883 TUBBP07437 444 aa6.32□□□□□ -1.4
CSMD3-204ENST00000455883 HSP90AB4PQ58FF6 505 aa6.32□□□□□ -1.4
CSMD3-204ENST00000455883 ZNF777Q9ULD5 760 aaPredicted RBP6.32□□□□□ -1.4
CSMD3-204ENST00000455883 A6NNZ2 444 aa6.32□□□□□ -1.4
CSMD3-204ENST00000455883 BECN2A8MW95 431 aa6.32□□□□□ -1.4
CSMD3-204ENST00000455883 TUBB8Q3ZCM7 444 aa6.32□□□□□ -1.4
CSMD3-204ENST00000455883 KLHL34Q8N239 644 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms