RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 PTPRTO14522 1441 aa30.69■■■□□ 2.5
COL9A3-202ENST00000452372 NCOA1Q15788 1441 aa30.68■■■□□ 2.5
COL9A3-202ENST00000452372 DNMT1P26358 1616 aaKnown RBP30.67■■■□□ 2.5
COL9A3-202ENST00000452372 FAM50AQ14320 339 aaKnown RBP30.67■■■□□ 2.5
COL9A3-202ENST00000452372 DAPK1P53355 1430 aa30.66■■■□□ 2.5
COL9A3-202ENST00000452372 KIF3BO15066 747 aa30.66■■■□□ 2.5
COL9A3-202ENST00000452372 SHANK2Q9UPX8 1470 aa30.63■■■□□ 2.49
COL9A3-202ENST00000452372 CROCC2H7BZ55 1655 aa30.63■■■□□ 2.49
COL9A3-202ENST00000452372 CAMSAP1Q5T5Y3 1602 aa30.62■■■□□ 2.49
COL9A3-202ENST00000452372 NCKAP5LQ9HCH0 1330 aa30.58■■■□□ 2.49
COL9A3-202ENST00000452372 MYO3AQ8NEV4 1616 aa30.58■■■□□ 2.49
COL9A3-202ENST00000452372 FBXO31Q5XUX0 539 aaPredicted RBP30.57■■■□□ 2.48
COL9A3-202ENST00000452372 ZNF142P52746 1687 aaPredicted RBP30.56■■■□□ 2.48
COL9A3-202ENST00000452372 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.55■■■□□ 2.482e-6■■□□□ 11.9
COL9A3-202ENST00000452372 CEP170BQ9Y4F5 1589 aaPredicted RBP30.54■■■□□ 2.48
COL9A3-202ENST00000452372 CHIC2Q9UKJ5 165 aa30.53■■■□□ 2.48
COL9A3-202ENST00000452372 LTBP4Q8N2S1 1624 aa30.53■■■□□ 2.48
COL9A3-202ENST00000452372 WASHC2CQ9Y4E1 1318 aa30.51■■■□□ 2.48
COL9A3-202ENST00000452372 RRP7BPQ9NSQ0 103 aa30.5■■■□□ 2.47
COL9A3-202ENST00000452372 ANKRD30AQ9BXX3 1397 aa30.5■■■□□ 2.47
COL9A3-202ENST00000452372 KIF15Q9NS87 1388 aa30.5■■■□□ 2.47
COL9A3-202ENST00000452372 PLA2R1Q13018 1463 aa30.5■■■□□ 2.47
COL9A3-202ENST00000452372 RRBP1Q9P2E9 1410 aaKnown RBP30.49■■■□□ 2.47
COL9A3-202ENST00000452372 KDM5DQ9BY66 1539 aa30.49■■■□□ 2.47
COL9A3-202ENST00000452372 DUOX2Q9NRD8 1548 aa30.49■■■□□ 2.47
COL9A3-202ENST00000452372 FAM135AQ9P2D6 1515 aa30.48■■■□□ 2.47
COL9A3-202ENST00000452372 A2ML1A8K2U0 1454 aa30.47■■■□□ 2.47
COL9A3-202ENST00000452372 PZPP20742 1482 aa30.47■■■□□ 2.47
COL9A3-202ENST00000452372 PKD2Q13563 968 aa30.47■■■□□ 2.47
COL9A3-202ENST00000452372 ADGRL2O95490 1459 aa30.46■■■□□ 2.47
COL9A3-202ENST00000452372 TNRQ92752 1358 aa30.45■■■□□ 2.47
COL9A3-202ENST00000452372 EIF2AK4Q9P2K8 1649 aaKnown RBP30.43■■■□□ 2.46
COL9A3-202ENST00000452372 RNF17Q9BXT8 1623 aaKnown RBP30.42■■■□□ 2.46
COL9A3-202ENST00000452372 ERBINQ96RT1 1412 aa30.4■■■□□ 2.46
COL9A3-202ENST00000452372 ZNF335Q9H4Z2 1342 aaPredicted RBP30.39■■■□□ 2.46
COL9A3-202ENST00000452372 ITGAEP38570 1179 aa30.38■■■□□ 2.45
COL9A3-202ENST00000452372 MROH1Q8NDA8 1641 aa30.36■■■□□ 2.45
COL9A3-202ENST00000452372 ABCC3O15438 1527 aa30.36■■■□□ 2.45
COL9A3-202ENST00000452372 ROCK1Q13464 1354 aa30.35■■■□□ 2.45
COL9A3-202ENST00000452372 IQSEC2Q5JU85 1478 aa30.31■■■□□ 2.44
COL9A3-202ENST00000452372 NLRP1Q9C000 1473 aa30.29■■■□□ 2.44
COL9A3-202ENST00000452372 CFAP65Q6ZU64 1925 aaKnown RBP30.28■■■□□ 2.44
COL9A3-202ENST00000452372 ZC3H13Q5T200 1668 aaKnown RBP30.28■■■□□ 2.44
COL9A3-202ENST00000452372 THEMISQ8N1K5 641 aaPredicted RBP30.28■■■□□ 2.44
COL9A3-202ENST00000452372 ANKRD50Q9ULJ7 1429 aa30.28■■■□□ 2.44
COL9A3-202ENST00000452372 NEURL4Q96JN8 1562 aa30.28■■■□□ 2.44
COL9A3-202ENST00000452372 SPATA31D1Q6ZQQ2 1576 aa30.26■■■□□ 2.43
COL9A3-202ENST00000452372 DEPDC5O75140 1603 aa30.25■■■□□ 2.43
COL9A3-202ENST00000452372 CEP152O94986 1710 aa30.25■■■□□ 2.43
COL9A3-202ENST00000452372 POLR1AO95602 1720 aaPredicted RBP30.24■■■□□ 2.43
COL9A3-202ENST00000452372 UGGT1Q9NYU2 1555 aa30.24■■■□□ 2.43
COL9A3-202ENST00000452372 ANKLE2Q86XL3 938 aa30.23■■■□□ 2.43
COL9A3-202ENST00000452372 ERVK-7P63135 1459 aa30.23■■■□□ 2.43
COL9A3-202ENST00000452372 PRDM15P57071 1507 aaPredicted RBP30.22■■■□□ 2.43
COL9A3-202ENST00000452372 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.21■■■□□ 2.432e-8■□□□□ 9.6
COL9A3-202ENST00000452372 KANK1Q14678 1352 aa30.18■■■□□ 2.42
COL9A3-202ENST00000452372 MED14O60244 1454 aa30.17■■■□□ 2.42
COL9A3-202ENST00000452372 ARHGAP31Q2M1Z3 1444 aa30.16■■■□□ 2.42
COL9A3-202ENST00000452372 VWDEQ8N2E2 1590 aa30.14■■■□□ 2.42
COL9A3-202ENST00000452372 NPHP4O75161 1426 aaPredicted RBP30.12■■■□□ 2.41
COL9A3-202ENST00000452372 UBAP1LF5GYI3 381 aa30.11■■■□□ 2.41
COL9A3-202ENST00000452372 NAIPQ13075 1403 aa30.09■■■□□ 2.41
COL9A3-202ENST00000452372 LMTK2Q8IWU2 1503 aa30.09■■■□□ 2.41
COL9A3-202ENST00000452372 UBR1Q8IWV7 1749 aa30.08■■■□□ 2.41
COL9A3-202ENST00000452372 UNC13BO14795 1591 aa30.07■■■□□ 2.4
COL9A3-202ENST00000452372 HFM1A2PYH4 1435 aa30.05■■■□□ 2.4
COL9A3-202ENST00000452372 CPS1P31327 1500 aa30.04■■■□□ 2.4
COL9A3-202ENST00000452372 IQGAP1P46940 1657 aa30.04■■■□□ 2.4
COL9A3-202ENST00000452372 GCC2Q8IWJ2 1684 aa30.04■■■□□ 2.4
COL9A3-202ENST00000452372 LTKP29376 864 aa30.03■■■□□ 2.4
COL9A3-202ENST00000452372 ARHGAP23Q9P227 1491 aa30.01■■■□□ 2.4
COL9A3-202ENST00000452372 NUP155O75694 1391 aa29.99■■■□□ 2.39
COL9A3-202ENST00000452372 STRCP1A6NGW2 1772 aa29.98■■■□□ 2.39
COL9A3-202ENST00000452372 SLIT1O75093 1534 aa29.98■■■□□ 2.39
COL9A3-202ENST00000452372 EFCAB6Q5THR3 1501 aa29.97■■■□□ 2.39
COL9A3-202ENST00000452372 IDI1Q13907 227 aa29.97■■■□□ 2.39
COL9A3-202ENST00000452372 DISP3Q9P2K9 1392 aa29.96■■■□□ 2.39
COL9A3-202ENST00000452372 TXNDC2Q86VQ3 553 aa29.96■■■□□ 2.39
COL9A3-202ENST00000452372 PIK3C2BO00750 1634 aa29.96■■■□□ 2.39
COL9A3-202ENST00000452372 IQGAP3Q86VI3 1631 aa29.96■■■□□ 2.39
COL9A3-202ENST00000452372 TET3O43151 1660 aa29.95■■■□□ 2.39
COL9A3-202ENST00000452372 SCAF11Q99590 1463 aaKnown RBP29.95■■■□□ 2.39
COL9A3-202ENST00000452372 NOS1P29475 1434 aa29.93■■■□□ 2.38
COL9A3-202ENST00000452372 SYNMO15061 1565 aa29.91■■■□□ 2.38
COL9A3-202ENST00000452372 ILDR2Q71H61 639 aa29.91■■■□□ 2.38
COL9A3-202ENST00000452372 RPRD2Q5VT52 1461 aaKnown RBP29.91■■■□□ 2.38
COL9A3-202ENST00000452372 TMEM2Q9UHN6 1383 aa29.9■■■□□ 2.38
COL9A3-202ENST00000452372 TOM1O60784 492 aa29.9■■■□□ 2.38
COL9A3-202ENST00000452372 ALKQ9UM73 1620 aa29.89■■■□□ 2.38
COL9A3-202ENST00000452372 LRRC7Q96NW7 1537 aa29.88■■■□□ 2.37
COL9A3-202ENST00000452372 PIP4K2BP78356 416 aa29.87■■■□□ 2.37
COL9A3-202ENST00000452372 KDM5AP29375 1690 aaKnown RBP29.86■■■□□ 2.37
COL9A3-202ENST00000452372 EID1Q9Y6B2 187 aa29.86■■■□□ 2.37
COL9A3-202ENST00000452372 HSPA1LP34931 641 aa29.84■■■□□ 2.37
COL9A3-202ENST00000452372 STAG3Q9UJ98 1225 aa29.84■■■□□ 2.37
COL9A3-202ENST00000452372 E9PCH4 1651 aa29.84■■■□□ 2.37
COL9A3-202ENST00000452372 TRIM52Q96A61 297 aa29.83■■■□□ 2.37
COL9A3-202ENST00000452372 SLC52A1Q9NWF4 448 aa29.82■■■□□ 2.36
COL9A3-202ENST00000452372 SETD5Q9C0A6 1442 aa29.81■■■□□ 2.36
COL9A3-202ENST00000452372 SCAF1Q9H7N4 1312 aaKnown RBP29.81■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms