RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 EIF2AK4Q9P2K8 1649 aaKnown RBP20.5■□□□□ 0.87
USP39-207ENST00000450066 DEPDC5O75140 1603 aa20.49■□□□□ 0.87
USP39-207ENST00000450066 TEX14Q8IWB6 1497 aa20.49■□□□□ 0.87
USP39-207ENST00000450066 RAPGEF3O95398 923 aa20.48■□□□□ 0.87
USP39-207ENST00000450066 RICTORQ6R327 1708 aa20.47■□□□□ 0.87
USP39-207ENST00000450066 PPRC1Q5VV67 1664 aaKnown RBP20.47■□□□□ 0.87
USP39-207ENST00000450066 A2MP01023 1474 aa20.46■□□□□ 0.87
USP39-207ENST00000450066 KIF13AQ9H1H9 1805 aa20.45■□□□□ 0.86
USP39-207ENST00000450066 KIF3BO15066 747 aa20.44■□□□□ 0.86
USP39-207ENST00000450066 L3MBTL2Q969R5 705 aa20.44■□□□□ 0.86
USP39-207ENST00000450066 TSPOAP1O95153 1857 aa20.43■□□□□ 0.86
USP39-207ENST00000450066 ABCA6Q8N139 1617 aa20.42■□□□□ 0.86
USP39-207ENST00000450066 VWDEQ8N2E2 1590 aa20.42■□□□□ 0.86
USP39-207ENST00000450066 PRDM15P57071 1507 aaPredicted RBP20.42■□□□□ 0.86
USP39-207ENST00000450066 KANK1Q14678 1352 aa20.41■□□□□ 0.86
USP39-207ENST00000450066 FRMPD1Q5SYB0 1578 aa20.41■□□□□ 0.86
USP39-207ENST00000450066 MROH1Q8NDA8 1641 aa20.39■□□□□ 0.86
USP39-207ENST00000450066 ATP10AO60312 1499 aa20.39■□□□□ 0.85
USP39-207ENST00000450066 ZMYM4Q5VZL5 1548 aa20.39■□□□□ 0.85
USP39-207ENST00000450066 PLA2R1Q13018 1463 aa20.38■□□□□ 0.85
USP39-207ENST00000450066 DIP2CQ9Y2E4 1556 aa20.38■□□□□ 0.85
USP39-207ENST00000450066 RNF17Q9BXT8 1623 aaKnown RBP20.38■□□□□ 0.85
USP39-207ENST00000450066 BCORL1Q5H9F3 1711 aa20.38■□□□□ 0.85
USP39-207ENST00000450066 DIEXFQ68CQ4 756 aaKnown RBP20.37■□□□□ 0.85
USP39-207ENST00000450066 TET3O43151 1660 aa20.36■□□□□ 0.85
USP39-207ENST00000450066 CCDC144AA2RUR9 1427 aa20.36■□□□□ 0.85
USP39-207ENST00000450066 E9PCH4 1651 aa20.34■□□□□ 0.85
USP39-207ENST00000450066 YEATS2Q9ULM3 1422 aa20.33■□□□□ 0.85
USP39-207ENST00000450066 LMTK2Q8IWU2 1503 aa20.32■□□□□ 0.84
USP39-207ENST00000450066 PTPRTO14522 1441 aa20.3■□□□□ 0.84
USP39-207ENST00000450066 EFCAB6Q5THR3 1501 aa20.28■□□□□ 0.84
USP39-207ENST00000450066 TRPM2O94759 1503 aa20.28■□□□□ 0.84
USP39-207ENST00000450066 NBPF8Q3BBV2 869 aa20.27■□□□□ 0.84
USP39-207ENST00000450066 GGT6Q6P531 493 aa20.26■□□□□ 0.83
USP39-207ENST00000450066 SPHKAPQ2M3C7 1700 aa20.26■□□□□ 0.83
USP39-207ENST00000450066 COL17A1Q9UMD9 1497 aaPredicted RBP20.26■□□□□ 0.83
USP39-207ENST00000450066 UHRF1BP1Q6BDS2 1440 aa20.25■□□□□ 0.83
USP39-207ENST00000450066 REREQ9P2R6 1566 aa20.24■□□□□ 0.83
USP39-207ENST00000450066 CEP152O94986 1710 aa20.24■□□□□ 0.83
USP39-207ENST00000450066 DNAJC5Q9H3Z4 198 aa20.22■□□□□ 0.83
USP39-207ENST00000450066 ABCC3O15438 1527 aa20.22■□□□□ 0.83
USP39-207ENST00000450066 WASHC2CQ9Y4E1 1318 aa20.22■□□□□ 0.83
USP39-207ENST00000450066 DCAF11Q8TEB1 546 aa20.21■□□□□ 0.83
USP39-207ENST00000450066 AGLP35573 1532 aa20.19■□□□□ 0.82
USP39-207ENST00000450066 SPATA31E1Q6ZUB1 1445 aa20.19■□□□□ 0.82
USP39-207ENST00000450066 EIF4G2P78344 907 aaKnown RBP eCLIP20.18■□□□□ 0.82
USP39-207ENST00000450066 ZC3H13Q5T200 1668 aaKnown RBP20.18■□□□□ 0.82
USP39-207ENST00000450066 CLTCL1P53675 1640 aa20.18■□□□□ 0.82
USP39-207ENST00000450066 ARHGEF40Q8TER5 1519 aa20.17■□□□□ 0.82
USP39-207ENST00000450066 RGL3Q3MIN7 710 aa20.17■□□□□ 0.82
USP39-207ENST00000450066 NPATQ14207 1427 aa20.17■□□□□ 0.82
USP39-207ENST00000450066 ZNF326Q5BKZ1 582 aaKnown RBP20.16■□□□□ 0.82
USP39-207ENST00000450066 HIRIP3Q9BW71 556 aaPredicted RBP20.16■□□□□ 0.82
USP39-207ENST00000450066 KDM2AQ9Y2K7 1162 aa20.16■□□□□ 0.82
USP39-207ENST00000450066 CAMSAP1Q5T5Y3 1602 aa20.16■□□□□ 0.82
USP39-207ENST00000450066 RALGAPBQ86X10 1494 aa20.15■□□□□ 0.82
USP39-207ENST00000450066 NEURL4Q96JN8 1562 aa20.15■□□□□ 0.82
USP39-207ENST00000450066 HSPA5P11021 654 aaKnown RBP20.15■□□□□ 0.82
USP39-207ENST00000450066 ARHGAP31Q2M1Z3 1444 aa20.14■□□□□ 0.81
USP39-207ENST00000450066 PRAG1Q86YV5 1406 aa20.13■□□□□ 0.81
USP39-207ENST00000450066 PPP6R1Q9UPN7 881 aa20.12■□□□□ 0.81
USP39-207ENST00000450066 CNTLNQ9NXG0 1405 aa20.12■□□□□ 0.81
USP39-207ENST00000450066 TRHP20396 242 aaPredicted RBP20.11■□□□□ 0.81
USP39-207ENST00000450066 STAC3Q96MF2 364 aa20.11■□□□□ 0.81
USP39-207ENST00000450066 UGGT1Q9NYU2 1555 aa20.09■□□□□ 0.81
USP39-207ENST00000450066 NOS1P29475 1434 aa20.09■□□□□ 0.81
USP39-207ENST00000450066 SIGLEC1Q9BZZ2 1709 aa20.08■□□□□ 0.8
USP39-207ENST00000450066 TRPM1Q7Z4N2 1603 aa20.07■□□□□ 0.8
USP39-207ENST00000450066 KIF1BO60333 1816 aa20.06■□□□□ 0.8
USP39-207ENST00000450066 USP47Q96K76 1375 aa20.05■□□□□ 0.8
USP39-207ENST00000450066 CARD11Q9BXL7 1154 aa20.04■□□□□ 0.8
USP39-207ENST00000450066 ROCK2O75116 1388 aaKnown RBP20.04■□□□□ 0.8
USP39-207ENST00000450066 CFAP65Q6ZU64 1925 aaKnown RBP20.03■□□□□ 0.8
USP39-207ENST00000450066 MIER1Q8N108 512 aa20.03■□□□□ 0.8
USP39-207ENST00000450066 DDX10Q13206 875 aaKnown RBP20.03■□□□□ 0.8
USP39-207ENST00000450066 ADGRB3O60242 1522 aa20.03■□□□□ 0.8
USP39-207ENST00000450066 GPRASP1Q5JY77 1395 aa20.02■□□□□ 0.8
USP39-207ENST00000450066 SYNMO15061 1565 aa20.02■□□□□ 0.8
USP39-207ENST00000450066 PIK3C2BO00750 1634 aa20.02■□□□□ 0.79
USP39-207ENST00000450066 MADDQ8WXG6 1647 aa20.01■□□□□ 0.79
USP39-207ENST00000450066 LAMC1P11047 1609 aa19.99■□□□□ 0.79
USP39-207ENST00000450066 WASHC2AQ641Q2 1341 aa19.99■□□□□ 0.79
USP39-207ENST00000450066 MROH2AA6NES4 1674 aa19.99■□□□□ 0.79
USP39-207ENST00000450066 PREX1Q8TCU6 1659 aa19.99■□□□□ 0.79
USP39-207ENST00000450066 MYOM2P54296 1465 aa19.99■□□□□ 0.79
USP39-207ENST00000450066 SLC52A1Q9NWF4 448 aa19.98■□□□□ 0.79
USP39-207ENST00000450066 CLTCQ00610 1675 aaKnown RBP19.98■□□□□ 0.79
USP39-207ENST00000450066 NBPF1Q3BBV0 1214 aa19.97■□□□□ 0.79
USP39-207ENST00000450066 IFT172Q9UG01 1749 aa19.97■□□□□ 0.79
USP39-207ENST00000450066 MLECQ14165 292 aa19.96■□□□□ 0.79
USP39-207ENST00000450066 ERVK-7P63135 1459 aa19.95■□□□□ 0.78
USP39-207ENST00000450066 RPGRIP1LQ68CZ1 1315 aa19.95■□□□□ 0.78
USP39-207ENST00000450066 CCDC7Q96M83 1385 aa19.95■□□□□ 0.78
USP39-207ENST00000450066 C11orf95C9JLR9 678 aaPredicted RBP19.95■□□□□ 0.78
USP39-207ENST00000450066 CHGAP10645 457 aaKnown RBP19.95■□□□□ 0.78
USP39-207ENST00000450066 POLR1AO95602 1720 aaPredicted RBP19.94■□□□□ 0.78
USP39-207ENST00000450066 ARID4BQ4LE39 1312 aaPredicted RBP19.94■□□□□ 0.78
USP39-207ENST00000450066 IDI1Q13907 227 aa19.93■□□□□ 0.78
USP39-207ENST00000450066 NRXN1Q9ULB1 1477 aa19.93■□□□□ 0.78
USP39-207ENST00000450066 FBXO31Q5XUX0 539 aaPredicted RBP19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms