RNA–Protein interactions for RNA: ENST00000450000.5

CPSF7-208, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 4

Gene CPSF7, Length 574 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-208	ENST00000450000	CAMSAP1	Q5T5Y3	1602 aa		34.1	■■■■□ 3.05
CPSF7-208	ENST00000450000	FAM135A	Q9P2D6	1515 aa		34.09	■■■■□ 3.05
CPSF7-208	ENST00000450000	FBXO31	Q5XUX0	539 aa	Predicted RBP	34.08	■■■■□ 3.05
CPSF7-208	ENST00000450000	NCKAP5L	Q9HCH0	1330 aa		34.07	■■■■□ 3.05
CPSF7-208	ENST00000450000	TNR	Q92752	1358 aa		34.07	■■■■□ 3.04
CPSF7-208	ENST00000450000	MYO3A	Q8NEV4	1616 aa		34.06	■■■■□ 3.04
CPSF7-208	ENST00000450000	PKD2	Q13563	968 aa		34.06	■■■■□ 3.04
CPSF7-208	ENST00000450000	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	34.04	■■■■□ 3.04
CPSF7-208	ENST00000450000	PTPN23	Q9H3S7	1636 aa		34.04	■■■■□ 3.04
CPSF7-208	ENST00000450000	PZP	P20742	1482 aa		34.03	■■■■□ 3.04
CPSF7-208	ENST00000450000	RRP7BP	Q9NSQ0	103 aa		34.03	■■■■□ 3.04
CPSF7-208	ENST00000450000	FGD6	Q6ZV73	1430 aa		34.03	■■■■□ 3.04
CPSF7-208	ENST00000450000	KIF15	Q9NS87	1388 aa		34	■■■■□ 3.03
CPSF7-208	ENST00000450000	ABCC5	O15440	1437 aa		34	■■■■□ 3.03
CPSF7-208	ENST00000450000	A2ML1	A8K2U0	1454 aa		34	■■■■□ 3.03
CPSF7-208	ENST00000450000	DUOX2	Q9NRD8	1548 aa		33.99	■■■■□ 3.03
CPSF7-208	ENST00000450000	PLA2R1	Q13018	1463 aa		33.98	■■■■□ 3.03
CPSF7-208	ENST00000450000	ZNF142	P52746	1687 aa	Predicted RBP	33.97	■■■■□ 3.03
CPSF7-208	ENST00000450000	SHANK2	Q9UPX8	1470 aa		33.97	■■■■□ 3.03
CPSF7-208	ENST00000450000	DAPK1	P53355	1430 aa		33.96	■■■■□ 3.03
CPSF7-208	ENST00000450000	FAM50A	Q14320	339 aa	Known RBP	33.96	■■■■□ 3.03
CPSF7-208	ENST00000450000	CHIC2	Q9UKJ5	165 aa		33.96	■■■■□ 3.03
CPSF7-208	ENST00000450000	EIF2AK4	Q9P2K8	1649 aa	Known RBP	33.94	■■■■□ 3.02
CPSF7-208	ENST00000450000	THEMIS	Q8N1K5	641 aa	Predicted RBP	33.93	■■■■□ 3.02
CPSF7-208	ENST00000450000	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	33.93	■■■■□ 3.02	2e-8	■■□□□ 13
CPSF7-208	ENST00000450000	TCOF1	Q13428	1488 aa	Known RBP	33.93	■■■■□ 3.02
CPSF7-208	ENST00000450000	ANKRD30A	Q9BXX3	1397 aa		33.92	■■■■□ 3.02
CPSF7-208	ENST00000450000	RNF17	Q9BXT8	1623 aa	Known RBP	33.92	■■■■□ 3.02
CPSF7-208	ENST00000450000	ABCC3	O15438	1527 aa		33.89	■■■■□ 3.02
CPSF7-208	ENST00000450000	ERBIN	Q96RT1	1412 aa		33.89	■■■■□ 3.02
CPSF7-208	ENST00000450000	NLRP1	Q9C000	1473 aa		33.88	■■■■□ 3.01
CPSF7-208	ENST00000450000	KANK1	Q14678	1352 aa		33.87	■■■■□ 3.01
CPSF7-208	ENST00000450000	DNMT1	P26358	1616 aa	Known RBP	33.86	■■■■□ 3.01
CPSF7-208	ENST00000450000	ANKLE2	Q86XL3	938 aa		33.86	■■■■□ 3.01
CPSF7-208	ENST00000450000	ZC3H13	Q5T200	1668 aa	Known RBP	33.86	■■■■□ 3.01
CPSF7-208	ENST00000450000	CROCC2	H7BZ55	1655 aa		33.84	■■■■□ 3.01
CPSF7-208	ENST00000450000	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	33.82	■■■■□ 3.01
CPSF7-208	ENST00000450000	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	33.81	■■■■□ 3	1e-11	■■□□□ 12.1
CPSF7-208	ENST00000450000	UGGT1	Q9NYU2	1555 aa		33.8	■■■■□ 3
CPSF7-208	ENST00000450000	LTBP4	Q8N2S1	1624 aa		33.77	■■■■□ 3
CPSF7-208	ENST00000450000	ERVK-7	P63135	1459 aa		33.76	■■■■□ 3
CPSF7-208	ENST00000450000	MROH1	Q8NDA8	1641 aa		33.75	■■■□□ 2.99
CPSF7-208	ENST00000450000	SPATA31D1	Q6ZQQ2	1576 aa		33.73	■■■□□ 2.99
CPSF7-208	ENST00000450000	CEP152	O94986	1710 aa		33.72	■■■□□ 2.99
CPSF7-208	ENST00000450000	PRDM15	P57071	1507 aa	Predicted RBP	33.72	■■■□□ 2.99
CPSF7-208	ENST00000450000	IQSEC2	Q5JU85	1478 aa		33.71	■■■□□ 2.99
CPSF7-208	ENST00000450000	STAG3	Q9UJ98	1225 aa		33.69	■■■□□ 2.98
CPSF7-208	ENST00000450000	ARHGAP31	Q2M1Z3	1444 aa		33.68	■■■□□ 2.98
CPSF7-208	ENST00000450000	ADGRL2	O95490	1459 aa		33.65	■■■□□ 2.98
CPSF7-208	ENST00000450000	PPARGC1B	Q86YN6	1023 aa	Known RBP	33.65	■■■□□ 2.98
CPSF7-208	ENST00000450000	NPHP4	O75161	1426 aa	Predicted RBP	33.64	■■■□□ 2.98
CPSF7-208	ENST00000450000	UBAP1L	F5GYI3	381 aa		33.64	■■■□□ 2.98
CPSF7-208	ENST00000450000	POLR1A	O95602	1720 aa	Predicted RBP	33.64	■■■□□ 2.98
CPSF7-208	ENST00000450000	ANKRD50	Q9ULJ7	1429 aa		33.62	■■■□□ 2.97
CPSF7-208	ENST00000450000	DEPDC5	O75140	1603 aa		33.6	■■■□□ 2.97
CPSF7-208	ENST00000450000	ITGAE	P38570	1179 aa		33.59	■■■□□ 2.97
CPSF7-208	ENST00000450000	EID1	Q9Y6B2	187 aa		33.59	■■■□□ 2.97
CPSF7-208	ENST00000450000	CFAP65	Q6ZU64	1925 aa	Known RBP	33.59	■■■□□ 2.97
CPSF7-208	ENST00000450000	NEURL4	Q96JN8	1562 aa		33.59	■■■□□ 2.97
CPSF7-208	ENST00000450000	TXNDC2	Q86VQ3	553 aa		33.56	■■■□□ 2.96
CPSF7-208	ENST00000450000	MED14	O60244	1454 aa		33.56	■■■□□ 2.96
CPSF7-208	ENST00000450000	LMTK2	Q8IWU2	1503 aa		33.53	■■■□□ 2.96
CPSF7-208	ENST00000450000	CPS1	P31327	1500 aa		33.52	■■■□□ 2.96
CPSF7-208	ENST00000450000	SCAF11	Q99590	1463 aa	Known RBP	33.49	■■■□□ 2.95
CPSF7-208	ENST00000450000	SCAF1	Q9H7N4	1312 aa	Known RBP	33.49	■■■□□ 2.95
CPSF7-208	ENST00000450000	IDI1	Q13907	227 aa		33.48	■■■□□ 2.95
CPSF7-208	ENST00000450000	VWDE	Q8N2E2	1590 aa		33.47	■■■□□ 2.95
CPSF7-208	ENST00000450000	TOM1	O60784	492 aa		33.47	■■■□□ 2.95
CPSF7-208	ENST00000450000	UBR1	Q8IWV7	1749 aa		33.47	■■■□□ 2.95
CPSF7-208	ENST00000450000	ROCK1	Q13464	1354 aa		33.47	■■■□□ 2.95
CPSF7-208	ENST00000450000	IQGAP1	P46940	1657 aa		33.46	■■■□□ 2.95
CPSF7-208	ENST00000450000	SLC52A1	Q9NWF4	448 aa		33.46	■■■□□ 2.95
CPSF7-208	ENST00000450000	LTK	P29376	864 aa		33.44	■■■□□ 2.94
CPSF7-208	ENST00000450000	EFCAB6	Q5THR3	1501 aa		33.43	■■■□□ 2.94
CPSF7-208	ENST00000450000	TMEM2	Q9UHN6	1383 aa		33.42	■■■□□ 2.94
CPSF7-208	ENST00000450000	PIP4K2B	P78356	416 aa		33.41	■■■□□ 2.94
CPSF7-208	ENST00000450000	SLIT1	O75093	1534 aa		33.4	■■■□□ 2.94
CPSF7-208	ENST00000450000	PIK3C2B	O00750	1634 aa		33.39	■■■□□ 2.94
CPSF7-208	ENST00000450000	ARHGAP23	Q9P227	1491 aa		33.39	■■■□□ 2.94
CPSF7-208	ENST00000450000	RPRD2	Q5VT52	1461 aa	Known RBP	33.38	■■■□□ 2.93
CPSF7-208	ENST00000450000	NOS1	P29475	1434 aa		33.38	■■■□□ 2.93
CPSF7-208	ENST00000450000	BCAN	Q96GW7	911 aa		33.38	■■■□□ 2.93
CPSF7-208	ENST00000450000	DISP3	Q9P2K9	1392 aa		33.34	■■■□□ 2.93
CPSF7-208	ENST00000450000	HDGF	P51858	240 aa	Known RBP	33.33	■■■□□ 2.93
CPSF7-208	ENST00000450000	NUP155	O75694	1391 aa		33.33	■■■□□ 2.93
CPSF7-208	ENST00000450000	SYNM	O15061	1565 aa		33.32	■■■□□ 2.92
CPSF7-208	ENST00000450000	CHGA	P10645	457 aa	Known RBP	33.32	■■■□□ 2.92
CPSF7-208	ENST00000450000	TET3	O43151	1660 aa		33.29	■■■□□ 2.92
CPSF7-208	ENST00000450000	PPP1R15A	O75807	674 aa	Predicted RBP	33.29	■■■□□ 2.92
CPSF7-208	ENST00000450000	UNC13B	O14795	1591 aa		33.28	■■■□□ 2.92
CPSF7-208	ENST00000450000	ADGRB3	O60242	1522 aa		33.27	■■■□□ 2.92
CPSF7-208	ENST00000450000	KDM5A	P29375	1690 aa	Known RBP	33.26	■■■□□ 2.92
CPSF7-208	ENST00000450000	SLC26A8	Q96RN1	970 aa		33.24	■■■□□ 2.91
CPSF7-208	ENST00000450000	LRRC7	Q96NW7	1537 aa		33.23	■■■□□ 2.91
CPSF7-208	ENST00000450000	GCC2	Q8IWJ2	1684 aa		33.2	■■■□□ 2.91
CPSF7-208	ENST00000450000	RRBP1	Q9P2E9	1410 aa	Known RBP	33.19	■■■□□ 2.9
CPSF7-208	ENST00000450000	SENP3	Q9H4L4	574 aa	Predicted RBP	33.19	■■■□□ 2.9
CPSF7-208	ENST00000450000	HSPA1L	P34931	641 aa		33.18	■■■□□ 2.9
CPSF7-208	ENST00000450000	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	33.18	■■■□□ 2.9
CPSF7-208	ENST00000450000	KCNA6	P17658	529 aa		33.17	■■■□□ 2.9

Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms