RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 PLEKHG5O94827 1062 aa10.93□□□□□ -0.66
NIPBL-202ENST00000448238 NEUROD2Q15784 382 aa10.93□□□□□ -0.66
NIPBL-202ENST00000448238 G3V3G9 751 aa10.93□□□□□ -0.66
NIPBL-202ENST00000448238 RABEP1Q15276 862 aa10.93□□□□□ -0.66
NIPBL-202ENST00000448238 DCAF8Q5TAQ9 597 aa10.93□□□□□ -0.66
NIPBL-202ENST00000448238 NAP1L1P55209 391 aaKnown RBP10.93□□□□□ -0.66
NIPBL-202ENST00000448238 CCDC175P0C221 793 aa10.93□□□□□ -0.66
NIPBL-202ENST00000448238 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.92□□□□□ -0.662e-7■■■□□ 18.8
NIPBL-202ENST00000448238 PMFBP1Q8TBY8 1022 aa10.92□□□□□ -0.66
NIPBL-202ENST00000448238 FAM184AQ8NB25 1140 aa10.92□□□□□ -0.66
NIPBL-202ENST00000448238 CT47B1P0C2W7 299 aaPredicted RBP10.91□□□□□ -0.66
NIPBL-202ENST00000448238 CCP110O43303 1012 aa10.91□□□□□ -0.66
NIPBL-202ENST00000448238 MIER1Q8N108 512 aa10.91□□□□□ -0.66
NIPBL-202ENST00000448238 CCDC43Q96MW1 224 aaKnown RBP10.91□□□□□ -0.66
NIPBL-202ENST00000448238 EPS15P42566 896 aa10.91□□□□□ -0.66
NIPBL-202ENST00000448238 DHX8Q14562 1220 aaKnown RBP10.9□□□□□ -0.66
NIPBL-202ENST00000448238 PKNOX2Q96KN3 472 aa10.9□□□□□ -0.66
NIPBL-202ENST00000448238 OFD1O75665 1012 aa10.9□□□□□ -0.66
NIPBL-202ENST00000448238 PAF1Q8N7H5 531 aa10.9□□□□□ -0.66
NIPBL-202ENST00000448238 FAM43AQ8N2R8 423 aa10.9□□□□□ -0.67
NIPBL-202ENST00000448238 TRIM6-TRIM34B2RNG4 842 aa10.89□□□□□ -0.67
NIPBL-202ENST00000448238 HMGN5P82970 282 aaKnown RBP10.89□□□□□ -0.67
NIPBL-202ENST00000448238 SYNE3Q6ZMZ3 975 aa10.89□□□□□ -0.67
NIPBL-202ENST00000448238 NAT10Q9H0A0 1025 aaKnown RBP10.89□□□□□ -0.67
NIPBL-202ENST00000448238 ZFYVE27Q5T4F4 411 aa10.89□□□□□ -0.67
NIPBL-202ENST00000448238 ENOX2Q16206 610 aaKnown RBP10.89□□□□□ -0.67
NIPBL-202ENST00000448238 TRIM29Q14134 588 aa10.88□□□□□ -0.67
NIPBL-202ENST00000448238 DDX49Q9Y6V7 483 aaKnown RBP10.88□□□□□ -0.67
NIPBL-202ENST00000448238 AXDND1Q5T1B0 1012 aaPredicted RBP10.88□□□□□ -0.67
NIPBL-202ENST00000448238 B4GALNT3Q6L9W6 998 aa10.88□□□□□ -0.67
NIPBL-202ENST00000448238 STAMBPO95630 424 aa10.88□□□□□ -0.67
NIPBL-202ENST00000448238 AMOTL1Q8IY63 956 aa10.88□□□□□ -0.67
NIPBL-202ENST00000448238 GBP2P32456 591 aaPredicted RBP10.88□□□□□ -0.67
NIPBL-202ENST00000448238 TXLNBQ8N3L3 684 aa10.88□□□□□ -0.67
NIPBL-202ENST00000448238 KIF3BO15066 747 aa10.88□□□□□ -0.67
NIPBL-202ENST00000448238 LUC7LQ9NQ29 371 aaKnown RBP10.88□□□□□ -0.67
NIPBL-202ENST00000448238 U2SURPO15042 1029 aaKnown RBP10.87□□□□□ -0.67
NIPBL-202ENST00000448238 IPO9Q96P70 1041 aaKnown RBP10.87□□□□□ -0.67
NIPBL-202ENST00000448238 RBM19Q9Y4C8 960 aaKnown RBP10.87□□□□□ -0.67
NIPBL-202ENST00000448238 EIF3JO75822 258 aaKnown RBP10.87□□□□□ -0.67
NIPBL-202ENST00000448238 LMOD2Q6P5Q4 547 aa10.87□□□□□ -0.67
NIPBL-202ENST00000448238 ARID3CA6NKF2 412 aa10.86□□□□□ -0.67
NIPBL-202ENST00000448238 CCAR1Q8IX12 1150 aaKnown RBP10.86□□□□□ -0.67
NIPBL-202ENST00000448238 CTDP1Q9Y5B0 961 aaPredicted RBP10.86□□□□□ -0.67
NIPBL-202ENST00000448238 SLC26A8Q96RN1 970 aa10.85□□□□□ -0.67
NIPBL-202ENST00000448238 GSE1Q14687 1217 aa10.85□□□□□ -0.67
NIPBL-202ENST00000448238 WWC2Q6AWC2 1192 aa10.85□□□□□ -0.67
NIPBL-202ENST00000448238 P3H3Q8IVL6 736 aa10.85□□□□□ -0.67
NIPBL-202ENST00000448238 ANKRD62A6NC57 917 aa10.85□□□□□ -0.67
NIPBL-202ENST00000448238 CEP63Q96MT8 703 aa10.85□□□□□ -0.67
NIPBL-202ENST00000448238 CCDC112Q8NEF3 446 aa10.85□□□□□ -0.67
NIPBL-202ENST00000448238 IFT57Q9NWB7 429 aa10.85□□□□□ -0.67
NIPBL-202ENST00000448238 CCDC91Q7Z6B0 441 aa10.85□□□□□ -0.67
NIPBL-202ENST00000448238 HMGB1P1B2RPK0 211 aaPredicted RBP10.84□□□□□ -0.67
NIPBL-202ENST00000448238 CAVIN1Q6NZI2 390 aaKnown RBP10.84□□□□□ -0.67
NIPBL-202ENST00000448238 POGKQ9P215 609 aa10.84□□□□□ -0.67
NIPBL-202ENST00000448238 CHMP3Q9Y3E7 222 aa10.84□□□□□ -0.67
NIPBL-202ENST00000448238 CHMP5Q9NZZ3 219 aa10.84□□□□□ -0.67
NIPBL-202ENST00000448238 DDX23Q9BUQ8 820 aaKnown RBP10.84□□□□□ -0.67
NIPBL-202ENST00000448238 SASS6Q6UVJ0 657 aa10.83□□□□□ -0.68
NIPBL-202ENST00000448238 KAT6BQ8WYB5 2073 aa10.83□□□□□ -0.68
NIPBL-202ENST00000448238 SPAG9O60271 1321 aaKnown RBP10.83□□□□□ -0.68
NIPBL-202ENST00000448238 FRAT2O75474 233 aaPredicted RBP10.83□□□□□ -0.68
NIPBL-202ENST00000448238 GRIPAP1Q4V328 841 aa10.83□□□□□ -0.68
NIPBL-202ENST00000448238 SMARCE1Q969G3 411 aa10.83□□□□□ -0.68
NIPBL-202ENST00000448238 DDX11Q96FC9 970 aa10.83□□□□□ -0.68
NIPBL-202ENST00000448238 TOMM22Q9NS69 142 aa10.83□□□□□ -0.68
NIPBL-202ENST00000448238 IQCEQ6IPM2 695 aa10.82□□□□□ -0.68
NIPBL-202ENST00000448238 FYB1O15117 783 aa10.82□□□□□ -0.68
NIPBL-202ENST00000448238 VGFO15240 615 aaPredicted RBP10.82□□□□□ -0.68
NIPBL-202ENST00000448238 TRIM34Q9BYJ4 488 aa10.82□□□□□ -0.68
NIPBL-202ENST00000448238 GOLGA6L10A0A0M3HER8 536 aa10.82□□□□□ -0.68
NIPBL-202ENST00000448238 STK31Q9BXU1 1019 aa10.82□□□□□ -0.68
NIPBL-202ENST00000448238 SYCP1Q15431 976 aa10.81□□□□□ -0.68
NIPBL-202ENST00000448238 SHTN1A0MZ66 631 aa10.81□□□□□ -0.68
NIPBL-202ENST00000448238 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.81□□□□□ -0.68
NIPBL-202ENST00000448238 V9GYY5 206 aaPredicted RBP10.81□□□□□ -0.68
NIPBL-202ENST00000448238 MFAP1P55081 439 aaKnown RBP10.81□□□□□ -0.68
NIPBL-202ENST00000448238 NOL10Q9BSC4 688 aaKnown RBP10.81□□□□□ -0.68
NIPBL-202ENST00000448238 FAM107BQ9H098 131 aa10.81□□□□□ -0.68
NIPBL-202ENST00000448238 CSRNP3Q8WYN3 585 aa10.81□□□□□ -0.68
NIPBL-202ENST00000448238 CCDC97Q96F63 343 aaPredicted RBP10.81□□□□□ -0.68
NIPBL-202ENST00000448238 RSPH4AQ5TD94 716 aa10.81□□□□□ -0.68
NIPBL-202ENST00000448238 RNF20Q5VTR2 975 aa10.8□□□□□ -0.68
NIPBL-202ENST00000448238 OLFM4Q6UX06 510 aa10.8□□□□□ -0.68
NIPBL-202ENST00000448238 DESP17661 470 aa10.8□□□□□ -0.68
NIPBL-202ENST00000448238 ERLIN1O75477 346 aa10.8□□□□□ -0.68
NIPBL-202ENST00000448238 HDGFP51858 240 aaKnown RBP10.8□□□□□ -0.68
NIPBL-202ENST00000448238 APBB1O00213 710 aa10.8□□□□□ -0.68
NIPBL-202ENST00000448238 HMGB1P09429 215 aaKnown RBP10.79□□□□□ -0.68
NIPBL-202ENST00000448238 MCTP1Q6DN14 999 aa10.79□□□□□ -0.68
NIPBL-202ENST00000448238 MTUS2Q5JR59 1369 aa10.79□□□□□ -0.68
NIPBL-202ENST00000448238 ANKRD18BA2A2Z9 1011 aa10.79□□□□□ -0.68
NIPBL-202ENST00000448238 CCDC39Q9UFE4 941 aa10.79□□□□□ -0.68
NIPBL-202ENST00000448238 SEPT6Q14141 434 aa10.79□□□□□ -0.68
NIPBL-202ENST00000448238 ITPRIPQ8IWB1 547 aa10.79□□□□□ -0.68
NIPBL-202ENST00000448238 CARD11Q9BXL7 1154 aa10.79□□□□□ -0.68
NIPBL-202ENST00000448238 GON4LQ3T8J9 2241 aa10.78□□□□□ -0.68
NIPBL-202ENST00000448238 EIF3AQ14152 1382 aaKnown RBP10.78□□□□□ -0.68
NIPBL-202ENST00000448238 TXLNAP40222 546 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms