RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 CLSTN1O94985 981 aa9.66□□□□□ -0.86
NEDD9-204ENST00000448183 ISY1Q9ULR0 285 aaKnown RBP9.66□□□□□ -0.86
NEDD9-204ENST00000448183 NOL8Q76FK4 1167 aaKnown RBP9.66□□□□□ -0.86
NEDD9-204ENST00000448183 ZBED9Q6R2W3 1325 aa9.66□□□□□ -0.86
NEDD9-204ENST00000448183 LMOD3Q0VAK6 560 aa9.65□□□□□ -0.86
NEDD9-204ENST00000448183 TERF2IPQ9NYB0 399 aa9.65□□□□□ -0.86
NEDD9-204ENST00000448183 HSP90B1P14625 803 aaKnown RBP9.65□□□□□ -0.86
NEDD9-204ENST00000448183 SLC4A3P48751 1232 aa9.65□□□□□ -0.86
NEDD9-204ENST00000448183 KIF16BQ96L93 1317 aa9.65□□□□□ -0.86
NEDD9-204ENST00000448183 RRP1P56182 461 aaKnown RBP9.65□□□□□ -0.86
NEDD9-204ENST00000448183 PRKRIP1Q9H875 184 aaPredicted RBP9.65□□□□□ -0.86
NEDD9-204ENST00000448183 KIF3AQ9Y496 699 aa9.65□□□□□ -0.86
NEDD9-204ENST00000448183 CCDC88BA6NC98 1476 aa9.65□□□□□ -0.87
NEDD9-204ENST00000448183 EXOC6Q8TAG9 804 aa9.64□□□□□ -0.87
NEDD9-204ENST00000448183 SLC4A10Q6U841 1118 aa9.64□□□□□ -0.87
NEDD9-204ENST00000448183 ATAD2BQ9ULI0 1458 aa9.64□□□□□ -0.87
NEDD9-204ENST00000448183 CGNL1Q0VF96 1302 aa9.64□□□□□ -0.87
NEDD9-204ENST00000448183 GORABQ5T7V8 394 aa9.64□□□□□ -0.87
NEDD9-204ENST00000448183 DHX57Q6P158 1386 aaKnown RBP9.63□□□□□ -0.87
NEDD9-204ENST00000448183 MLECQ14165 292 aa9.63□□□□□ -0.87
NEDD9-204ENST00000448183 VSIG10Q8N0Z9 540 aa9.63□□□□□ -0.87
NEDD9-204ENST00000448183 ATP6V1DQ9Y5K8 247 aa9.63□□□□□ -0.87
NEDD9-204ENST00000448183 EFCAB2Q5VUJ9 269 aa9.63□□□□□ -0.87
NEDD9-204ENST00000448183 TPM3P06753 285 aa9.62□□□□□ -0.87
NEDD9-204ENST00000448183 FOXD4L5Q5VV16 416 aaPredicted RBP9.62□□□□□ -0.87
NEDD9-204ENST00000448183 FOXD4L4Q8WXT5 416 aaPredicted RBP9.62□□□□□ -0.87
NEDD9-204ENST00000448183 PLIN1O60240 522 aa9.62□□□□□ -0.87
NEDD9-204ENST00000448183 SF3A1Q15459 793 aaKnown RBP9.62□□□□□ -0.87
NEDD9-204ENST00000448183 CARMIL2Q6F5E8 1435 aa9.62□□□□□ -0.87
NEDD9-204ENST00000448183 E9PSI1 815 aa9.61□□□□□ -0.87
NEDD9-204ENST00000448183 CRBNQ96SW2 442 aa9.61□□□□□ -0.87
NEDD9-204ENST00000448183 ST20-MTHFSA0A0A6YYL1 179 aa9.61□□□□□ -0.87
NEDD9-204ENST00000448183 CADPSQ9ULU8 1353 aa9.61□□□□□ -0.87
NEDD9-204ENST00000448183 ZKSCAN2Q63HK3 967 aa9.61□□□□□ -0.87
NEDD9-204ENST00000448183 PAK3O75914 559 aaPredicted RBP9.6□□□□□ -0.87
NEDD9-204ENST00000448183 ANKRD45Q5TZF3 282 aa9.6□□□□□ -0.87
NEDD9-204ENST00000448183 CHMP3Q9Y3E7 222 aa9.6□□□□□ -0.87
NEDD9-204ENST00000448183 ZNF330Q9Y3S2 320 aaPredicted RBP9.6□□□□□ -0.87
NEDD9-204ENST00000448183 RASSF8Q8NHQ8 419 aa9.6□□□□□ -0.87
NEDD9-204ENST00000448183 PANK3Q9H999 370 aa9.6□□□□□ -0.87
NEDD9-204ENST00000448183 GOLGA6L19H0YKK7 550 aa9.59□□□□□ -0.87
NEDD9-204ENST00000448183 RRP7AQ9Y3A4 280 aaKnown RBP9.59□□□□□ -0.87
NEDD9-204ENST00000448183 A0A0U1RQG5 324 aaPredicted RBP9.59□□□□□ -0.87
NEDD9-204ENST00000448183 TAF7LQ5H9L4 462 aa9.59□□□□□ -0.87
NEDD9-204ENST00000448183 BCL2L13Q9BXK5 485 aa9.59□□□□□ -0.87
NEDD9-204ENST00000448183 RSPH4AQ5TD94 716 aa9.59□□□□□ -0.87
NEDD9-204ENST00000448183 CHMP5Q9NZZ3 219 aa9.59□□□□□ -0.87
NEDD9-204ENST00000448183 COG6Q9Y2V7 657 aa9.59□□□□□ -0.87
NEDD9-204ENST00000448183 BECN2A8MW95 431 aa9.59□□□□□ -0.87
NEDD9-204ENST00000448183 CSB-PGBD3P0DP91 1061 aa9.59□□□□□ -0.87
NEDD9-204ENST00000448183 CHMP4CQ96CF2 233 aa9.58□□□□□ -0.88
NEDD9-204ENST00000448183 KIF3BO15066 747 aa9.58□□□□□ -0.88
NEDD9-204ENST00000448183 H3BQV1 296 aa9.57□□□□□ -0.88
NEDD9-204ENST00000448183 IFFO2Q5TF58 517 aa9.57□□□□□ -0.88
NEDD9-204ENST00000448183 CREBRFQ8IUR6 639 aa9.57□□□□□ -0.88
NEDD9-204ENST00000448183 NGEFQ8N5V2 710 aa9.57□□□□□ -0.88
NEDD9-204ENST00000448183 RILPL2Q969X0 211 aa9.57□□□□□ -0.88
NEDD9-204ENST00000448183 NCAPD3P42695 1498 aa9.57□□□□□ -0.88
NEDD9-204ENST00000448183 REC8O95072 547 aa9.57□□□□□ -0.88
NEDD9-204ENST00000448183 FAM184AQ8NB25 1140 aa9.56□□□□□ -0.88
NEDD9-204ENST00000448183 GPS2Q13227 327 aa9.56□□□□□ -0.88
NEDD9-204ENST00000448183 FOXD4L6Q3SYB3 417 aaPredicted RBP9.56□□□□□ -0.88
NEDD9-204ENST00000448183 NCBP3Q53F19 620 aaKnown RBP9.56□□□□□ -0.88
NEDD9-204ENST00000448183 FOXD4L3Q6VB84 417 aaPredicted RBP9.56□□□□□ -0.88
NEDD9-204ENST00000448183 DDX19BQ9UMR2 479 aa9.56□□□□□ -0.88
NEDD9-204ENST00000448183 ELL2O00472 640 aaPredicted RBP9.55□□□□□ -0.88
NEDD9-204ENST00000448183 HNRNPMP52272 730 aaKnown RBP eCLIP9.55□□□□□ -0.88
NEDD9-204ENST00000448183 APAF1O14727 1248 aa9.55□□□□□ -0.88
NEDD9-204ENST00000448183 AMPHP49418 695 aa9.55□□□□□ -0.88
NEDD9-204ENST00000448183 TOMM22Q9NS69 142 aa9.55□□□□□ -0.88
NEDD9-204ENST00000448183 TSR1Q2NL82 804 aaKnown RBP9.55□□□□□ -0.88
NEDD9-204ENST00000448183 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.55□□□□□ -0.88
NEDD9-204ENST00000448183 CCAR2Q8N163 923 aaKnown RBP9.55□□□□□ -0.88
NEDD9-204ENST00000448183 USP47Q96K76 1375 aa9.54□□□□□ -0.88
NEDD9-204ENST00000448183 CCDC18Q5T9S5 1454 aa9.54□□□□□ -0.88
NEDD9-204ENST00000448183 WIZO95785 1651 aa9.54□□□□□ -0.88
NEDD9-204ENST00000448183 TRAK1Q9UPV9 953 aa9.54□□□□□ -0.88
NEDD9-204ENST00000448183 FHOD3Q2V2M9 1422 aa9.54□□□□□ -0.88
NEDD9-204ENST00000448183 FAM43AQ8N2R8 423 aa9.54□□□□□ -0.88
NEDD9-204ENST00000448183 FAM13BQ9NYF5 915 aa9.54□□□□□ -0.88
NEDD9-204ENST00000448183 CCDC144AA2RUR9 1427 aa9.54□□□□□ -0.88
NEDD9-204ENST00000448183 TPM1P09493 284 aa9.53□□□□□ -0.88
NEDD9-204ENST00000448183 TPD52L1Q16890 204 aaPredicted RBP9.53□□□□□ -0.88
NEDD9-204ENST00000448183 ZNF771Q7L3S4 317 aaPredicted RBP9.53□□□□□ -0.88
NEDD9-204ENST00000448183 CEP89Q96ST8 783 aa9.53□□□□□ -0.88
NEDD9-204ENST00000448183 SETQ01105 290 aaPredicted RBP9.53□□□□□ -0.88
NEDD9-204ENST00000448183 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.53□□□□□ -0.88
NEDD9-204ENST00000448183 TDRD9Q8NDG6 1382 aaKnown RBP9.53□□□□□ -0.88
NEDD9-204ENST00000448183 NGDNQ8NEJ9 315 aaKnown RBP9.53□□□□□ -0.88
NEDD9-204ENST00000448183 DIAPH3Q9NSV4 1193 aa9.53□□□□□ -0.88
NEDD9-204ENST00000448183 PES1O00541 588 aaKnown RBP9.53□□□□□ -0.88
NEDD9-204ENST00000448183 RUFY2Q8WXA3 655 aa9.53□□□□□ -0.88
NEDD9-204ENST00000448183 NUCB2P80303 420 aa9.52□□□□□ -0.88
NEDD9-204ENST00000448183 DZIP1LQ8IYY4 767 aaKnown RBP9.52□□□□□ -0.88
NEDD9-204ENST00000448183 ZNF592Q92610 1267 aa9.52□□□□□ -0.88
NEDD9-204ENST00000448183 RAPGEF2Q9Y4G8 1499 aa9.52□□□□□ -0.89
NEDD9-204ENST00000448183 ZKSCAN1P17029 563 aaPredicted RBP9.52□□□□□ -0.89
NEDD9-204ENST00000448183 NFKBIBQ15653 356 aa9.52□□□□□ -0.89
NEDD9-204ENST00000448183 CPLX2Q6PUV4 134 aaKnown RBP9.52□□□□□ -0.89
NEDD9-204ENST00000448183 CCDC70Q6NSX1 233 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms