RNA–Protein interactions for RNA: ENST00000447271.1

PTPN3-205, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 2

Gene PTPN3, Length 587 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-205ENST00000447271 NEO1Q92859 1461 aa9.84□□□□□ -0.83
PTPN3-205ENST00000447271 RNF17Q9BXT8 1623 aaKnown RBP9.83□□□□□ -0.84
PTPN3-205ENST00000447271 EFCAB5A4FU69 1503 aa9.82□□□□□ -0.84
PTPN3-205ENST00000447271 TCOF1Q13428 1488 aaKnown RBP9.82□□□□□ -0.84
PTPN3-205ENST00000447271 PLA2R1Q13018 1463 aa9.81□□□□□ -0.84
PTPN3-205ENST00000447271 ATAD2Q6PL18 1390 aa9.81□□□□□ -0.84
PTPN3-205ENST00000447271 GALR2O43603 387 aaPredicted RBP9.81□□□□□ -0.84
PTPN3-205ENST00000447271 MEX3CQ5U5Q3 659 aaKnown RBP9.81□□□□□ -0.84
PTPN3-205ENST00000447271 NHSL1Q5SYE7 1610 aa9.81□□□□□ -0.84
PTPN3-205ENST00000447271 RGS12O14924 1447 aa9.8□□□□□ -0.84
PTPN3-205ENST00000447271 RAPGEF2Q9Y4G8 1499 aa9.79□□□□□ -0.84
PTPN3-205ENST00000447271 PRELPP51888 382 aa9.79□□□□□ -0.84
PTPN3-205ENST00000447271 DENND4BO75064 1496 aaPredicted RBP9.79□□□□□ -0.84
PTPN3-205ENST00000447271 HRCP23327 699 aa9.75□□□□□ -0.85
PTPN3-205ENST00000447271 ZMYM4Q5VZL5 1548 aa9.75□□□□□ -0.85
PTPN3-205ENST00000447271 ABCA9Q8IUA7 1624 aa9.74□□□□□ -0.85
PTPN3-205ENST00000447271 FHOD3Q2V2M9 1422 aa9.74□□□□□ -0.85
PTPN3-205ENST00000447271 MIER1Q8N108 512 aa9.74□□□□□ -0.85
PTPN3-205ENST00000447271 EP400Q96L91 3159 aa9.73□□□□□ -0.85
PTPN3-205ENST00000447271 VWDEQ8N2E2 1590 aa9.73□□□□□ -0.85
PTPN3-205ENST00000447271 PSDA5PKW4 1024 aaPredicted RBP9.73□□□□□ -0.85
PTPN3-205ENST00000447271 RASEFQ8IZ41 740 aa9.73□□□□□ -0.85
PTPN3-205ENST00000447271 LRP6O75581 1613 aa9.73□□□□□ -0.85
PTPN3-205ENST00000447271 FAM135BQ49AJ0 1406 aa9.73□□□□□ -0.85
PTPN3-205ENST00000447271 CCDC125Q86Z20 511 aa9.72□□□□□ -0.85
PTPN3-205ENST00000447271 TSPYL2Q9H2G4 693 aaPredicted RBP9.72□□□□□ -0.85
PTPN3-205ENST00000447271 ESF1Q9H501 851 aaKnown RBP9.72□□□□□ -0.85
PTPN3-205ENST00000447271 JCADQ9P266 1359 aa9.72□□□□□ -0.85
PTPN3-205ENST00000447271 ZNF142P52746 1687 aaPredicted RBP9.71□□□□□ -0.85
PTPN3-205ENST00000447271 POLR1AO95602 1720 aaPredicted RBP9.71□□□□□ -0.85
PTPN3-205ENST00000447271 CCDC61Q9Y6R9 512 aa9.71□□□□□ -0.86
PTPN3-205ENST00000447271 MAGI2Q86UL8 1455 aa9.71□□□□□ -0.86
PTPN3-205ENST00000447271 MS4A3Q96HJ5 214 aa9.7□□□□□ -0.86
PTPN3-205ENST00000447271 WRNQ14191 1432 aaPredicted RBP eCLIP9.7□□□□□ -0.86
PTPN3-205ENST00000447271 C9orf84Q5VXU9 1444 aa9.7□□□□□ -0.86
PTPN3-205ENST00000447271 STRCP1A6NGW2 1772 aa9.7□□□□□ -0.86
PTPN3-205ENST00000447271 ATP10AO60312 1499 aa9.69□□□□□ -0.86
PTPN3-205ENST00000447271 PAK3O75914 559 aaPredicted RBP9.69□□□□□ -0.86
PTPN3-205ENST00000447271 ROBO1Q9Y6N7 1651 aa9.69□□□□□ -0.86
PTPN3-205ENST00000447271 HECW1Q76N89 1606 aa9.68□□□□□ -0.86
PTPN3-205ENST00000447271 PHLPP1O60346 1717 aa9.68□□□□□ -0.86
PTPN3-205ENST00000447271 ABCA8O94911 1581 aa9.67□□□□□ -0.86
PTPN3-205ENST00000447271 CDK13Q14004 1512 aaKnown RBP9.67□□□□□ -0.86
PTPN3-205ENST00000447271 CLCN6P51797 869 aa9.67□□□□□ -0.86
PTPN3-205ENST00000447271 RBM6P78332 1123 aaKnown RBP9.67□□□□□ -0.86
PTPN3-205ENST00000447271 PLCD3Q8N3E9 789 aa9.67□□□□□ -0.86
PTPN3-205ENST00000447271 MYO3AQ8NEV4 1616 aa9.67□□□□□ -0.86
PTPN3-205ENST00000447271 SYNMO15061 1565 aa9.67□□□□□ -0.86
PTPN3-205ENST00000447271 CEP170BQ9Y4F5 1589 aaPredicted RBP9.67□□□□□ -0.86
PTPN3-205ENST00000447271 PELP1Q8IZL8 1130 aaKnown RBP9.66□□□□□ -0.86
PTPN3-205ENST00000447271 NEURL4Q96JN8 1562 aa9.66□□□□□ -0.86
PTPN3-205ENST00000447271 NPATQ14207 1427 aa9.65□□□□□ -0.86
PTPN3-205ENST00000447271 GIGYF1O75420 1035 aaPredicted RBP9.65□□□□□ -0.86
PTPN3-205ENST00000447271 NUBP1P53384 320 aa9.65□□□□□ -0.86
PTPN3-205ENST00000447271 COL13A1Q5TAT6 717 aaPredicted RBP9.65□□□□□ -0.86
PTPN3-205ENST00000447271 DCBLD2Q96PD2 775 aa9.65□□□□□ -0.86
PTPN3-205ENST00000447271 DISP1Q96F81 1524 aa9.65□□□□□ -0.86
PTPN3-205ENST00000447271 AFF2P51816 1311 aa9.64□□□□□ -0.87
PTPN3-205ENST00000447271 SPATA31A6Q5VVP1 1343 aa9.64□□□□□ -0.87
PTPN3-205ENST00000447271 LHX8Q68G74 356 aa9.64□□□□□ -0.87
PTPN3-205ENST00000447271 TNS4Q8IZW8 715 aa9.64□□□□□ -0.87
PTPN3-205ENST00000447271 KIF12Q96FN5 646 aa9.63□□□□□ -0.87
PTPN3-205ENST00000447271 QTRT2Q9H974 415 aaKnown RBP9.63□□□□□ -0.87
PTPN3-205ENST00000447271 TRPC6Q9Y210 931 aa9.63□□□□□ -0.87
PTPN3-205ENST00000447271 BCL9LQ86UU0 1499 aa9.63□□□□□ -0.87
PTPN3-205ENST00000447271 DEFB132Q7Z7B7 95 aa9.61□□□□□ -0.87
PTPN3-205ENST00000447271 NWD1Q149M9 1564 aa9.61□□□□□ -0.87
PTPN3-205ENST00000447271 XIRP1Q702N8 1843 aaKnown RBP9.61□□□□□ -0.87
PTPN3-205ENST00000447271 CHD4Q14839 1912 aa9.6□□□□□ -0.87
PTPN3-205ENST00000447271 KDM5CP41229 1560 aa9.6□□□□□ -0.87
PTPN3-205ENST00000447271 IQGAP2Q13576 1575 aa9.59□□□□□ -0.87
PTPN3-205ENST00000447271 CAMTA1Q9Y6Y1 1673 aa9.59□□□□□ -0.87
PTPN3-205ENST00000447271 SUPT5HO00267 1087 aaKnown RBP9.59□□□□□ -0.87
PTPN3-205ENST00000447271 NGLY1Q96IV0 654 aa9.59□□□□□ -0.87
PTPN3-205ENST00000447271 POTEB2H3BUK9 544 aa9.58□□□□□ -0.88
PTPN3-205ENST00000447271 MAP3K13O43283 966 aa9.58□□□□□ -0.88
PTPN3-205ENST00000447271 PLEKHG5O94827 1062 aa9.58□□□□□ -0.88
PTPN3-205ENST00000447271 CFAP74Q9C0B2 1584 aa9.58□□□□□ -0.88
PTPN3-205ENST00000447271 CNTLNQ9NXG0 1405 aa9.56□□□□□ -0.88
PTPN3-205ENST00000447271 ATMINO43313 823 aaPredicted RBP9.56□□□□□ -0.88
PTPN3-205ENST00000447271 VASPP50552 380 aaPredicted RBP9.56□□□□□ -0.88
PTPN3-205ENST00000447271 ASTLQ6HA08 431 aaPredicted RBP9.56□□□□□ -0.88
PTPN3-205ENST00000447271 DNMT1P26358 1616 aaKnown RBP9.56□□□□□ -0.88
PTPN3-205ENST00000447271 ARID3CA6NKF2 412 aa9.55□□□□□ -0.88
PTPN3-205ENST00000447271 BLMP54132 1417 aaPredicted RBP9.55□□□□□ -0.88
PTPN3-205ENST00000447271 MROH2AA6NES4 1674 aa9.55□□□□□ -0.88
PTPN3-205ENST00000447271 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.54□□□□□ -0.88
PTPN3-205ENST00000447271 UTRNP46939 3433 aa9.54□□□□□ -0.88
PTPN3-205ENST00000447271 COL16A1Q07092 1604 aaPredicted RBP9.53□□□□□ -0.88
PTPN3-205ENST00000447271 FBXO3Q9UK99 471 aa9.53□□□□□ -0.88
PTPN3-205ENST00000447271 AGLP35573 1532 aa9.52□□□□□ -0.88
PTPN3-205ENST00000447271 NPHP4O75161 1426 aaPredicted RBP9.52□□□□□ -0.89
PTPN3-205ENST00000447271 ATN1P54259 1190 aaPredicted RBP9.52□□□□□ -0.89
PTPN3-205ENST00000447271 SF3B2Q13435 895 aaKnown RBP9.52□□□□□ -0.89
PTPN3-205ENST00000447271 FGD6Q6ZV73 1430 aa9.52□□□□□ -0.89
PTPN3-205ENST00000447271 BMP2KQ9NSY1 1161 aaPredicted RBP9.52□□□□□ -0.89
PTPN3-205ENST00000447271 SHPRHQ149N8 1683 aa9.51□□□□□ -0.89
PTPN3-205ENST00000447271 ZMYM3Q14202 1370 aa9.51□□□□□ -0.89
PTPN3-205ENST00000447271 R3HDM1Q15032 1099 aaKnown RBP9.51□□□□□ -0.89
PTPN3-205ENST00000447271 ANKLE2Q86XL3 938 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms