RNA–Protein interactions for RNA: ENST00000446646.1

HDAC9-216, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-216ENST00000446646 KIF14Q15058 1648 aa12.06□□□□□ -0.48
HDAC9-216ENST00000446646 TOM1O60784 492 aa12.05□□□□□ -0.48
HDAC9-216ENST00000446646 PIP4P2Q8N4L2 257 aa12.05□□□□□ -0.48
HDAC9-216ENST00000446646 PLA2R1Q13018 1463 aa12.05□□□□□ -0.48
HDAC9-216ENST00000446646 MLH3Q9UHC1 1453 aa12.04□□□□□ -0.48
HDAC9-216ENST00000446646 SPDYE4A6NLX3 237 aa12.04□□□□□ -0.48
HDAC9-216ENST00000446646 CNTLNQ9NXG0 1405 aa12.03□□□□□ -0.48
HDAC9-216ENST00000446646 ARHGAP5Q13017 1502 aa12.03□□□□□ -0.48
HDAC9-216ENST00000446646 POTEAQ6S8J7 498 aa12.03□□□□□ -0.48
HDAC9-216ENST00000446646 CEP170BQ9Y4F5 1589 aaPredicted RBP12.02□□□□□ -0.49
HDAC9-216ENST00000446646 MYO3AQ8NEV4 1616 aa12.02□□□□□ -0.49
HDAC9-216ENST00000446646 PTPRKQ15262 1439 aa12.02□□□□□ -0.49
HDAC9-216ENST00000446646 MYO5CQ9NQX4 1742 aa12.01□□□□□ -0.49
HDAC9-216ENST00000446646 SHANK2Q9UPX8 1470 aa12.01□□□□□ -0.49
HDAC9-216ENST00000446646 FXR2P51116 673 aaKnown RBP eCLIP12□□□□□ -0.49
HDAC9-216ENST00000446646 ATP1B4Q9UN42 357 aaPredicted RBP12□□□□□ -0.49
HDAC9-216ENST00000446646 NEURL4Q96JN8 1562 aa12□□□□□ -0.49
HDAC9-216ENST00000446646 ZNF142P52746 1687 aaPredicted RBP11.99□□□□□ -0.49
HDAC9-216ENST00000446646 KIDINS220Q9ULH0 1771 aa11.99□□□□□ -0.49
HDAC9-216ENST00000446646 VWDEQ8N2E2 1590 aa11.97□□□□□ -0.49
HDAC9-216ENST00000446646 CPS1P31327 1500 aa11.97□□□□□ -0.49
HDAC9-216ENST00000446646 ABCC1P33527 1531 aa11.96□□□□□ -0.49
HDAC9-216ENST00000446646 MROH2AA6NES4 1674 aa11.96□□□□□ -0.5
HDAC9-216ENST00000446646 CLTCQ00610 1675 aaKnown RBP11.96□□□□□ -0.5
HDAC9-216ENST00000446646 TROQ12816 1431 aaPredicted RBP11.94□□□□□ -0.5
HDAC9-216ENST00000446646 DNMT1P26358 1616 aaKnown RBP11.94□□□□□ -0.5
HDAC9-216ENST00000446646 SETD1AO15047 1707 aaKnown RBP11.94□□□□□ -0.5
HDAC9-216ENST00000446646 CDC42BPBQ9Y5S2 1711 aa11.94□□□□□ -0.5
HDAC9-216ENST00000446646 FBXO31Q5XUX0 539 aaPredicted RBP11.93□□□□□ -0.5
HDAC9-216ENST00000446646 A2ML1A8K2U0 1454 aa11.93□□□□□ -0.5
HDAC9-216ENST00000446646 SUPT6HQ7KZ85 1726 aaKnown RBP11.92□□□□□ -0.5
HDAC9-216ENST00000446646 ITSN2Q9NZM3 1697 aa11.92□□□□□ -0.5
HDAC9-216ENST00000446646 GGT6Q6P531 493 aa11.92□□□□□ -0.5
HDAC9-216ENST00000446646 SAMD9LQ8IVG5 1584 aa11.92□□□□□ -0.5
HDAC9-216ENST00000446646 PRR29P0C7W0 189 aa11.91□□□□□ -0.5
HDAC9-216ENST00000446646 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.91□□□□□ -0.5
HDAC9-216ENST00000446646 LRRC7Q96NW7 1537 aa11.91□□□□□ -0.5
HDAC9-216ENST00000446646 STRCP1A6NGW2 1772 aa11.9□□□□□ -0.5
HDAC9-216ENST00000446646 PRKAR2AP13861 404 aaKnown RBP11.89□□□□□ -0.51
HDAC9-216ENST00000446646 HNRNPMP52272 730 aaKnown RBP eCLIP11.89□□□□□ -0.51
HDAC9-216ENST00000446646 PLXNC1O60486 1568 aa11.88□□□□□ -0.51
HDAC9-216ENST00000446646 SPAG9O60271 1321 aaKnown RBP11.87□□□□□ -0.51
HDAC9-216ENST00000446646 PREX2Q70Z35 1606 aa11.87□□□□□ -0.51
HDAC9-216ENST00000446646 ZNF777Q9ULD5 760 aaPredicted RBP11.87□□□□□ -0.51
HDAC9-216ENST00000446646 CDK11AQ9UQ88 783 aaPredicted RBP11.87□□□□□ -0.51
HDAC9-216ENST00000446646 NPHP4O75161 1426 aaPredicted RBP11.86□□□□□ -0.51
HDAC9-216ENST00000446646 POLR1AO95602 1720 aaPredicted RBP11.86□□□□□ -0.51
HDAC9-216ENST00000446646 LRRIQ1Q96JM4 1722 aa11.86□□□□□ -0.51
HDAC9-216ENST00000446646 SYCP2Q9BX26 1530 aa11.86□□□□□ -0.51
HDAC9-216ENST00000446646 A2MP01023 1474 aa11.85□□□□□ -0.51
HDAC9-216ENST00000446646 TNRQ92752 1358 aa11.85□□□□□ -0.51
HDAC9-216ENST00000446646 ANKLE2Q86XL3 938 aa11.85□□□□□ -0.51
HDAC9-216ENST00000446646 UPF1Q92900 1129 aaKnown RBP eCLIP11.85□□□□□ -0.51
HDAC9-216ENST00000446646 CLIP1P30622 1438 aa11.85□□□□□ -0.51
HDAC9-216ENST00000446646 MED14O60244 1454 aa11.83□□□□□ -0.52
HDAC9-216ENST00000446646 ARHGAP35Q9NRY4 1499 aa11.83□□□□□ -0.52
HDAC9-216ENST00000446646 RNF17Q9BXT8 1623 aaKnown RBP11.82□□□□□ -0.52
HDAC9-216ENST00000446646 ATP7AQ04656 1500 aa11.82□□□□□ -0.52
HDAC9-216ENST00000446646 CHADLQ6NUI6 762 aa11.82□□□□□ -0.52
HDAC9-216ENST00000446646 STAG3Q9UJ98 1225 aa11.82□□□□□ -0.52
HDAC9-216ENST00000446646 FMN1Q68DA7 1419 aa11.81□□□□□ -0.52
HDAC9-216ENST00000446646 HAX1O00165 279 aa11.81□□□□□ -0.52
HDAC9-216ENST00000446646 INO80Q9ULG1 1556 aaPredicted RBP11.8□□□□□ -0.52
HDAC9-216ENST00000446646 CDC42BPAQ5VT25 1732 aa11.8□□□□□ -0.52
HDAC9-216ENST00000446646 GPATCH8Q9UKJ3 1502 aaKnown RBP11.78□□□□□ -0.52
HDAC9-216ENST00000446646 IQGAP1P46940 1657 aa11.78□□□□□ -0.52
HDAC9-216ENST00000446646 PZPP20742 1482 aa11.77□□□□□ -0.52
HDAC9-216ENST00000446646 THEMISQ8N1K5 641 aaPredicted RBP11.77□□□□□ -0.53
HDAC9-216ENST00000446646 TRIM52Q96A61 297 aa11.77□□□□□ -0.53
HDAC9-216ENST00000446646 RBM33Q96EV2 1170 aaKnown RBP11.77□□□□□ -0.53
HDAC9-216ENST00000446646 DEPDC5O75140 1603 aa11.77□□□□□ -0.53
HDAC9-216ENST00000446646 ZNF644Q9H582 1327 aaPredicted RBP11.77□□□□□ -0.53
HDAC9-216ENST00000446646 MIA2Q96PC5 1412 aa11.77□□□□□ -0.53
HDAC9-216ENST00000446646 UGGT1Q9NYU2 1555 aa11.76□□□□□ -0.53
HDAC9-216ENST00000446646 FAM135BQ49AJ0 1406 aa11.76□□□□□ -0.53
HDAC9-216ENST00000446646 SYNMO15061 1565 aa11.75□□□□□ -0.53
HDAC9-216ENST00000446646 XIRP1Q702N8 1843 aaKnown RBP11.75□□□□□ -0.53
HDAC9-216ENST00000446646 FKBP8Q14318 412 aa11.74□□□□□ -0.53
HDAC9-216ENST00000446646 FAM135AQ9P2D6 1515 aa11.74□□□□□ -0.53
HDAC9-216ENST00000446646 KIF3BO15066 747 aa11.73□□□□□ -0.53
HDAC9-216ENST00000446646 LTKP29376 864 aa11.73□□□□□ -0.53
HDAC9-216ENST00000446646 ZC3H13Q5T200 1668 aaKnown RBP11.73□□□□□ -0.53
HDAC9-216ENST00000446646 KIAA1107Q9UPP5 1409 aa11.73□□□□□ -0.53
HDAC9-216ENST00000446646 NLRP1Q9C000 1473 aa11.72□□□□□ -0.53
HDAC9-216ENST00000446646 PROM2Q8N271 834 aa11.72□□□□□ -0.53
HDAC9-216ENST00000446646 LRP6O75581 1613 aa11.71□□□□□ -0.53
HDAC9-216ENST00000446646 DHX29Q7Z478 1369 aaKnown RBP11.71□□□□□ -0.53
HDAC9-216ENST00000446646 UBTFP17480 764 aaKnown RBP11.71□□□□□ -0.53
HDAC9-216ENST00000446646 CFDP1Q9UEE9 299 aaPredicted RBP11.71□□□□□ -0.53
HDAC9-216ENST00000446646 TMEM94Q12767 1356 aa11.7□□□□□ -0.54
HDAC9-216ENST00000446646 WASHC2CQ9Y4E1 1318 aa11.7□□□□□ -0.54
HDAC9-216ENST00000446646 ROBO1Q9Y6N7 1651 aa11.7□□□□□ -0.54
HDAC9-216ENST00000446646 KDM5DQ9BY66 1539 aa11.7□□□□□ -0.54
HDAC9-216ENST00000446646 EEA1Q15075 1411 aa11.69□□□□□ -0.54
HDAC9-216ENST00000446646 MBD5Q9P267 1494 aa11.69□□□□□ -0.54
HDAC9-216ENST00000446646 CASKIN1Q8WXD9 1431 aa11.69□□□□□ -0.54
HDAC9-216ENST00000446646 NCOA2Q15596 1464 aa11.68□□□□□ -0.54
HDAC9-216ENST00000446646 ADGBQ8N7X0 1667 aa11.68□□□□□ -0.54
HDAC9-216ENST00000446646 EP400Q96L91 3159 aa11.67□□□□□ -0.54
HDAC9-216ENST00000446646 MAP3K1Q13233 1512 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms