RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 ZC3H15Q8WU90 426 aaKnown RBP14.11□□□□□ -0.15
SYNE2-206ENST00000441438 UGGT2Q9NYU1 1516 aa14.11□□□□□ -0.15
SYNE2-206ENST00000441438 MARCH6O60337 910 aa14.11□□□□□ -0.15
SYNE2-206ENST00000441438 IL27Q8NEV9 243 aa14.1□□□□□ -0.15
SYNE2-206ENST00000441438 CHGAP10645 457 aaKnown RBP14.09□□□□□ -0.15
SYNE2-206ENST00000441438 ANKRD13AQ8IZ07 590 aa14.09□□□□□ -0.15
SYNE2-206ENST00000441438 SNAPC4Q5SXM2 1469 aa14.09□□□□□ -0.15
SYNE2-206ENST00000441438 PRXQ9BXM0 1461 aa14.09□□□□□ -0.15
SYNE2-206ENST00000441438 MAPK8IP2Q13387 824 aaPredicted RBP14.09□□□□□ -0.15
SYNE2-206ENST00000441438 SPATA32Q96LK8 384 aa14.09□□□□□ -0.15
SYNE2-206ENST00000441438 RETREG2Q8NC44 543 aa14.08□□□□□ -0.16
SYNE2-206ENST00000441438 CANXP27824 592 aaKnown RBP14.08□□□□□ -0.16
SYNE2-206ENST00000441438 MYH16Q9H6N6 1097 aa14.07□□□□□ -0.16
SYNE2-206ENST00000441438 CEP170Q5SW79 1584 aa14.07□□□□□ -0.16
SYNE2-206ENST00000441438 UNCXA6NJT0 531 aa14.06□□□□□ -0.16
SYNE2-206ENST00000441438 STAC3Q96MF2 364 aa14.06□□□□□ -0.16
SYNE2-206ENST00000441438 SLC52A1Q9NWF4 448 aa14.06□□□□□ -0.16
SYNE2-206ENST00000441438 GPBP1L1Q9HC44 474 aaPredicted RBP14.05□□□□□ -0.16
SYNE2-206ENST00000441438 IGSF5Q9NSI5 407 aa14.05□□□□□ -0.16
SYNE2-206ENST00000441438 PPME1Q9Y570 386 aa14.05□□□□□ -0.16
SYNE2-206ENST00000441438 KIAA0586Q9BVV6 1533 aa14.05□□□□□ -0.16
SYNE2-206ENST00000441438 RAD54L2Q9Y4B4 1467 aa14.05□□□□□ -0.16
SYNE2-206ENST00000441438 CLGNO14967 610 aa14.04□□□□□ -0.16
SYNE2-206ENST00000441438 WDR70Q9NW82 654 aa14.04□□□□□ -0.16
SYNE2-206ENST00000441438 TPD52L2O43399 206 aaKnown RBP14.04□□□□□ -0.16
SYNE2-206ENST00000441438 SAMD9Q5K651 1589 aa14.04□□□□□ -0.16
SYNE2-206ENST00000441438 AQRO60306 1485 aaKnown RBP eCLIP14.03□□□□□ -0.16
SYNE2-206ENST00000441438 RIMBP3CA6NJZ7 1639 aa14.03□□□□□ -0.16
SYNE2-206ENST00000441438 RIMBP3BA6NNM3 1639 aa14.03□□□□□ -0.16
SYNE2-206ENST00000441438 RIMBP3Q9UFD9 1639 aa14.03□□□□□ -0.16
SYNE2-206ENST00000441438 BARGINQ6ZT62 677 aa14.03□□□□□ -0.16
SYNE2-206ENST00000441438 EFCAB5A4FU69 1503 aa14.03□□□□□ -0.16
SYNE2-206ENST00000441438 UHRF1BP1LA0JNW5 1464 aa14.02□□□□□ -0.16
SYNE2-206ENST00000441438 ZNF622Q969S3 477 aaKnown RBP eCLIP14.02□□□□□ -0.16
SYNE2-206ENST00000441438 NME8Q8N427 588 aa14.02□□□□□ -0.17
SYNE2-206ENST00000441438 RTL5Q5HYW3 569 aaPredicted RBP14.01□□□□□ -0.17
SYNE2-206ENST00000441438 TERF2IPQ9NYB0 399 aa14.01□□□□□ -0.17
SYNE2-206ENST00000441438 SUGT1Q9Y2Z0 365 aa14.01□□□□□ -0.17
SYNE2-206ENST00000441438 RBM27Q9P2N5 1060 aaKnown RBP14□□□□□ -0.17
SYNE2-206ENST00000441438 CNGB1Q14028 1251 aaPredicted RBP14□□□□□ -0.17
SYNE2-206ENST00000441438 APBB1IPQ7Z5R6 666 aaPredicted RBP14□□□□□ -0.17
SYNE2-206ENST00000441438 FOXD1Q16676 465 aa13.99□□□□□ -0.17
SYNE2-206ENST00000441438 SPINK5Q9NQ38 1064 aaPredicted RBP13.99□□□□□ -0.17
SYNE2-206ENST00000441438 ARHGEF11O15085 1522 aa13.99□□□□□ -0.17
SYNE2-206ENST00000441438 NEUROD1Q13562 356 aa13.99□□□□□ -0.17
SYNE2-206ENST00000441438 SIRT1Q96EB6 747 aa13.98□□□□□ -0.17
SYNE2-206ENST00000441438 ZC3H4Q9UPT8 1303 aaKnown RBP13.98□□□□□ -0.17
SYNE2-206ENST00000441438 CDCA8Q53HL2 280 aa13.98□□□□□ -0.17
SYNE2-206ENST00000441438 RAPGEF2Q9Y4G8 1499 aa13.97□□□□□ -0.17
SYNE2-206ENST00000441438 IQGAP2Q13576 1575 aa13.97□□□□□ -0.17
SYNE2-206ENST00000441438 CLUAP1Q96AJ1 413 aa13.97□□□□□ -0.17
SYNE2-206ENST00000441438 ATXN8OSP0DMR3 200 aa13.96□□□□□ -0.17
SYNE2-206ENST00000441438 IGF1RP08069 1367 aa13.96□□□□□ -0.17
SYNE2-206ENST00000441438 AMOTL2Q9Y2J4 779 aa13.95□□□□□ -0.18
SYNE2-206ENST00000441438 EVI5LQ96CN4 794 aa13.95□□□□□ -0.18
SYNE2-206ENST00000441438 TDRD9Q8NDG6 1382 aaKnown RBP13.95□□□□□ -0.18
SYNE2-206ENST00000441438 TRAK2O60296 914 aa13.94□□□□□ -0.18
SYNE2-206ENST00000441438 SOX12O15370 315 aa13.94□□□□□ -0.18
SYNE2-206ENST00000441438 GOLGA3Q08378 1498 aa13.94□□□□□ -0.18
SYNE2-206ENST00000441438 GORABQ5T7V8 394 aa13.93□□□□□ -0.18
SYNE2-206ENST00000441438 MMP14P50281 582 aa13.93□□□□□ -0.18
SYNE2-206ENST00000441438 RINLQ6ZS11 566 aa13.92□□□□□ -0.18
SYNE2-206ENST00000441438 TESPA1A2RU30 521 aaPredicted RBP13.92□□□□□ -0.18
SYNE2-206ENST00000441438 MAPKBP1O60336 1514 aa13.91□□□□□ -0.18
SYNE2-206ENST00000441438 RIOK3O14730 519 aaKnown RBP13.91□□□□□ -0.18
SYNE2-206ENST00000441438 ANKRD62A6NC57 917 aa13.91□□□□□ -0.18
SYNE2-206ENST00000441438 RALBP1Q15311 655 aa13.9□□□□□ -0.18
SYNE2-206ENST00000441438 TSHZ1Q6ZSZ6 1077 aa13.9□□□□□ -0.18
SYNE2-206ENST00000441438 GLI2P10070 1586 aa13.9□□□□□ -0.18
SYNE2-206ENST00000441438 KIAA0556O60303 1618 aa13.89□□□□□ -0.19
SYNE2-206ENST00000441438 VGFO15240 615 aaPredicted RBP13.89□□□□□ -0.19
SYNE2-206ENST00000441438 YTHDC1Q96MU7 727 aaKnown RBP13.89□□□□□ -0.19
SYNE2-206ENST00000441438 MICAL1Q8TDZ2 1067 aa13.88□□□□□ -0.19
SYNE2-206ENST00000441438 RBM26Q5T8P6 1007 aaKnown RBP13.87□□□□□ -0.19
SYNE2-206ENST00000441438 RPS6KL1Q9Y6S9 549 aa13.87□□□□□ -0.19
SYNE2-206ENST00000441438 FOXD4Q12950 439 aaPredicted RBP13.87□□□□□ -0.19
SYNE2-206ENST00000441438 HS6ST3Q8IZP7 471 aa13.86□□□□□ -0.19
SYNE2-206ENST00000441438 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.85□□□□□ -0.19
SYNE2-206ENST00000441438 ZNF662Q6ZS27 426 aa13.85□□□□□ -0.19
SYNE2-206ENST00000441438 CHMP7Q8WUX9 453 aaPredicted RBP13.85□□□□□ -0.19
SYNE2-206ENST00000441438 MYBPC2Q14324 1141 aa13.85□□□□□ -0.19
SYNE2-206ENST00000441438 ARAP1Q96P48 1450 aa13.85□□□□□ -0.19
SYNE2-206ENST00000441438 HIRIP3Q9BW71 556 aaPredicted RBP13.84□□□□□ -0.19
SYNE2-206ENST00000441438 KDM5BQ9UGL1 1544 aa13.84□□□□□ -0.19
SYNE2-206ENST00000441438 SH3BP1Q9Y3L3 701 aa13.83□□□□□ -0.2
SYNE2-206ENST00000441438 ABCA8O94911 1581 aa13.83□□□□□ -0.2
SYNE2-206ENST00000441438 DIEXFQ68CQ4 756 aaKnown RBP13.82□□□□□ -0.2
SYNE2-206ENST00000441438 MTA3Q9BTC8 594 aa13.82□□□□□ -0.2
SYNE2-206ENST00000441438 PEX14O75381 377 aa13.81□□□□□ -0.2
SYNE2-206ENST00000441438 ZNF777Q9ULD5 760 aaPredicted RBP13.81□□□□□ -0.2
SYNE2-206ENST00000441438 HDAC5Q9UQL6 1122 aa13.81□□□□□ -0.2
SYNE2-206ENST00000441438 TTC36A6NLP5 189 aa13.81□□□□□ -0.2
SYNE2-206ENST00000441438 NBPF11Q86T75 865 aa13.81□□□□□ -0.2
SYNE2-206ENST00000441438 ARIH1Q9Y4X5 557 aaPredicted RBP13.81□□□□□ -0.2
SYNE2-206ENST00000441438 CARMIL1Q5VZK9 1371 aa13.81□□□□□ -0.2
SYNE2-206ENST00000441438 AXDND1Q5T1B0 1012 aaPredicted RBP13.8□□□□□ -0.2
SYNE2-206ENST00000441438 RAB11FIP3O75154 756 aa13.79□□□□□ -0.2
SYNE2-206ENST00000441438 STK24Q9Y6E0 443 aa13.79□□□□□ -0.2
SYNE2-206ENST00000441438 PPFIA4O75335 1185 aa13.79□□□□□ -0.2
SYNE2-206ENST00000441438 NBPF1Q3BBV0 1214 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms