RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 MAGI3Q5TCQ9 1506 aa11.7□□□□□ -0.54
COPB1-202ENST00000439561 PDS5BQ9NTI5 1447 aa11.7□□□□□ -0.54
COPB1-202ENST00000439561 TNNT2P45379 298 aaPredicted RBP11.7□□□□□ -0.54
COPB1-202ENST00000439561 CHMP7Q8WUX9 453 aaPredicted RBP11.7□□□□□ -0.54
COPB1-202ENST00000439561 DNMBPQ6XZF7 1577 aa11.69□□□□□ -0.54
COPB1-202ENST00000439561 HECW1Q76N89 1606 aa11.68□□□□□ -0.54
COPB1-202ENST00000439561 ANKRD50Q9ULJ7 1429 aa11.68□□□□□ -0.54
COPB1-202ENST00000439561 WASHC2CQ9Y4E1 1318 aa11.67□□□□□ -0.54
COPB1-202ENST00000439561 ROCK1Q13464 1354 aa11.67□□□□□ -0.54
COPB1-202ENST00000439561 THOC2Q8NI27 1593 aaKnown RBP11.67□□□□□ -0.54
COPB1-202ENST00000439561 PRG4Q92954 1404 aaPredicted RBP11.67□□□□□ -0.54
COPB1-202ENST00000439561 CUL7Q14999 1698 aa11.66□□□□□ -0.54
COPB1-202ENST00000439561 APAF1O14727 1248 aa11.66□□□□□ -0.54
COPB1-202ENST00000439561 PRDM2Q13029 1718 aa11.66□□□□□ -0.54
COPB1-202ENST00000439561 POGKQ9P215 609 aa11.66□□□□□ -0.54
COPB1-202ENST00000439561 COG6Q9Y2V7 657 aa11.66□□□□□ -0.54
COPB1-202ENST00000439561 CTTNBP2Q8WZ74 1663 aa11.65□□□□□ -0.54
COPB1-202ENST00000439561 TCOF1Q13428 1488 aaKnown RBP11.65□□□□□ -0.54
COPB1-202ENST00000439561 BCAR3O75815 825 aa11.65□□□□□ -0.54
COPB1-202ENST00000439561 LRPPRCP42704 1394 aaKnown RBP11.65□□□□□ -0.54
COPB1-202ENST00000439561 CLUAP1Q96AJ1 413 aa11.65□□□□□ -0.54
COPB1-202ENST00000439561 BCL2L13Q9BXK5 485 aa11.64□□□□□ -0.55
COPB1-202ENST00000439561 CC2D2AQ9P2K1 1620 aa11.64□□□□□ -0.55
COPB1-202ENST00000439561 CCDC144AA2RUR9 1427 aa11.62□□□□□ -0.55
COPB1-202ENST00000439561 PANK1Q8TE04 598 aa11.62□□□□□ -0.55
COPB1-202ENST00000439561 RSPH6AQ9H0K4 717 aa11.62□□□□□ -0.55
COPB1-202ENST00000439561 RRP7AQ9Y3A4 280 aaKnown RBP11.62□□□□□ -0.55
COPB1-202ENST00000439561 HSP90AA1P07900 732 aaKnown RBP11.62□□□□□ -0.55
COPB1-202ENST00000439561 C8orf34Q49A92 452 aa11.62□□□□□ -0.55
COPB1-202ENST00000439561 L1TD1Q5T7N2 865 aaKnown RBP11.61□□□□□ -0.55
COPB1-202ENST00000439561 GLIPR1L2Q4G1C9 344 aa11.61□□□□□ -0.55
COPB1-202ENST00000439561 SENP3Q9H4L4 574 aaPredicted RBP11.61□□□□□ -0.55
COPB1-202ENST00000439561 PZPP20742 1482 aa11.6□□□□□ -0.55
COPB1-202ENST00000439561 GCC2Q8IWJ2 1684 aa11.6□□□□□ -0.55
COPB1-202ENST00000439561 PPP2R1AP30153 589 aa11.6□□□□□ -0.55
COPB1-202ENST00000439561 DNAJC5BQ9UF47 199 aa11.6□□□□□ -0.55
COPB1-202ENST00000439561 CHGAP10645 457 aaKnown RBP11.59□□□□□ -0.55
COPB1-202ENST00000439561 DUSP27Q5VZP5 1158 aa11.59□□□□□ -0.55
COPB1-202ENST00000439561 PNNQ9H307 717 aaKnown RBP11.59□□□□□ -0.55
COPB1-202ENST00000439561 URB2Q14146 1524 aaKnown RBP11.59□□□□□ -0.55
COPB1-202ENST00000439561 GOLGA6L3A6NEY3 463 aa11.58□□□□□ -0.56
COPB1-202ENST00000439561 MFAP1P55081 439 aaKnown RBP11.58□□□□□ -0.56
COPB1-202ENST00000439561 CENPJQ9HC77 1338 aaPredicted RBP11.58□□□□□ -0.56
COPB1-202ENST00000439561 CAMSAP2Q08AD1 1489 aa11.58□□□□□ -0.56
COPB1-202ENST00000439561 FAM43AQ8N2R8 423 aa11.58□□□□□ -0.56
COPB1-202ENST00000439561 BCORL1Q5H9F3 1711 aa11.58□□□□□ -0.56
COPB1-202ENST00000439561 PER1O15534 1290 aaPredicted RBP11.57□□□□□ -0.56
COPB1-202ENST00000439561 PARD3Q8TEW0 1356 aa11.57□□□□□ -0.56
COPB1-202ENST00000439561 DISP3Q9P2K9 1392 aa11.57□□□□□ -0.56
COPB1-202ENST00000439561 CDCA8Q53HL2 280 aa11.57□□□□□ -0.56
COPB1-202ENST00000439561 FTSJ3Q8IY81 847 aaKnown RBP11.57□□□□□ -0.56
COPB1-202ENST00000439561 TRIM44Q96DX7 344 aaPredicted RBP11.57□□□□□ -0.56
COPB1-202ENST00000439561 IGHDP01880 384 aa11.56□□□□□ -0.56
COPB1-202ENST00000439561 SAMD9Q5K651 1589 aa11.56□□□□□ -0.56
COPB1-202ENST00000439561 RALGAPBQ86X10 1494 aa11.56□□□□□ -0.56
COPB1-202ENST00000439561 SEC24BO95487 1268 aa11.56□□□□□ -0.56
COPB1-202ENST00000439561 IQGAP2Q13576 1575 aa11.55□□□□□ -0.56
COPB1-202ENST00000439561 C9orf84Q5VXU9 1444 aa11.55□□□□□ -0.56
COPB1-202ENST00000439561 PLEKHH1Q9ULM0 1364 aa11.55□□□□□ -0.56
COPB1-202ENST00000439561 KDM2BQ8NHM5 1336 aa11.55□□□□□ -0.56
COPB1-202ENST00000439561 UBE2Q2Q8WVN8 375 aa11.54□□□□□ -0.56
COPB1-202ENST00000439561 TROQ12816 1431 aaPredicted RBP11.54□□□□□ -0.56
COPB1-202ENST00000439561 MAPK8IP3Q9UPT6 1336 aa11.54□□□□□ -0.56
COPB1-202ENST00000439561 E9PSI1 815 aa11.54□□□□□ -0.56
COPB1-202ENST00000439561 SLFN5Q08AF3 891 aa11.54□□□□□ -0.56
COPB1-202ENST00000439561 LRRIQ1Q96JM4 1722 aa11.53□□□□□ -0.56
COPB1-202ENST00000439561 VSIG10Q8N0Z9 540 aa11.53□□□□□ -0.56
COPB1-202ENST00000439561 FOXD4L1Q9NU39 408 aa11.53□□□□□ -0.56
COPB1-202ENST00000439561 ARHGEF11O15085 1522 aa11.53□□□□□ -0.56
COPB1-202ENST00000439561 CGNL1Q0VF96 1302 aa11.53□□□□□ -0.56
COPB1-202ENST00000439561 JPH4Q96JJ6 628 aa11.53□□□□□ -0.56
COPB1-202ENST00000439561 SPINK5Q9NQ38 1064 aaPredicted RBP11.53□□□□□ -0.56
COPB1-202ENST00000439561 ERBINQ96RT1 1412 aa11.52□□□□□ -0.56
COPB1-202ENST00000439561 HSCBQ8IWL3 235 aa11.51□□□□□ -0.57
COPB1-202ENST00000439561 LAMC3Q9Y6N6 1575 aa11.51□□□□□ -0.57
COPB1-202ENST00000439561 PLB1Q6P1J6 1458 aa11.51□□□□□ -0.57
COPB1-202ENST00000439561 KDM5CP41229 1560 aa11.51□□□□□ -0.57
COPB1-202ENST00000439561 MORC1Q86VD1 984 aa11.5□□□□□ -0.57
COPB1-202ENST00000439561 PMFBP1Q8TBY8 1022 aa11.5□□□□□ -0.57
COPB1-202ENST00000439561 TESK2Q96S53 571 aa11.5□□□□□ -0.57
COPB1-202ENST00000439561 RWDD1Q9H446 243 aaPredicted RBP11.5□□□□□ -0.57
COPB1-202ENST00000439561 RRAGDQ9NQL2 400 aaPredicted RBP11.5□□□□□ -0.57
COPB1-202ENST00000439561 DNMT1P26358 1616 aaKnown RBP11.5□□□□□ -0.57
COPB1-202ENST00000439561 HSP90AB1P08238 724 aaKnown RBP11.5□□□□□ -0.57
COPB1-202ENST00000439561 MYH16Q9H6N6 1097 aa11.5□□□□□ -0.57
COPB1-202ENST00000439561 PDZRN3Q9UPQ7 1066 aa11.5□□□□□ -0.57
COPB1-202ENST00000439561 NUP153P49790 1475 aaKnown RBP11.49□□□□□ -0.57
COPB1-202ENST00000439561 GPATCH8Q9UKJ3 1502 aaKnown RBP11.49□□□□□ -0.57
COPB1-202ENST00000439561 HSP90AA2PQ14568 343 aaPredicted RBP11.49□□□□□ -0.57
COPB1-202ENST00000439561 ANP32BQ92688 251 aaKnown RBP11.49□□□□□ -0.57
COPB1-202ENST00000439561 PANK2Q9BZ23 570 aa11.49□□□□□ -0.57
COPB1-202ENST00000439561 KIF14Q15058 1648 aa11.49□□□□□ -0.57
COPB1-202ENST00000439561 WDR62O43379 1518 aa11.49□□□□□ -0.57
COPB1-202ENST00000439561 KIAA0586Q9BVV6 1533 aa11.49□□□□□ -0.57
COPB1-202ENST00000439561 NCLP19338 710 aaKnown RBP11.49□□□□□ -0.57
COPB1-202ENST00000439561 ABCA5Q8WWZ7 1642 aa11.48□□□□□ -0.57
COPB1-202ENST00000439561 ITPRIPQ8IWB1 547 aa11.48□□□□□ -0.57
COPB1-202ENST00000439561 TBC1D2Q9BYX2 928 aa11.48□□□□□ -0.57
COPB1-202ENST00000439561 U2SURPO15042 1029 aaKnown RBP11.47□□□□□ -0.57
COPB1-202ENST00000439561 CARMIL2Q6F5E8 1435 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms