RNA–Protein interactions for RNA: ENST00000439374.6

CDC42SE1-202, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CDC42SE1, Length 3,498 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-202ENST00000439374 WDR62O43379 1518 aa13.08□□□□□ -0.32
CDC42SE1-202ENST00000439374 LRRIQ1Q96JM4 1722 aa13.08□□□□□ -0.32
CDC42SE1-202ENST00000439374 FRAT1Q92837 279 aaPredicted RBP13.08□□□□□ -0.32
CDC42SE1-202ENST00000439374 RCAN3Q9UKA8 241 aa13.07□□□□□ -0.32
CDC42SE1-202ENST00000439374 ADAMTS12P58397 1594 aa13.07□□□□□ -0.32
CDC42SE1-202ENST00000439374 WDR43Q15061 677 aaKnown RBP eCLIP13.07□□□□□ -0.32
CDC42SE1-202ENST00000439374 PNISRQ8TF01 805 aaKnown RBP13.07□□□□□ -0.32
CDC42SE1-202ENST00000439374 KIF3BO15066 747 aa13.06□□□□□ -0.32
CDC42SE1-202ENST00000439374 CCDC146Q8IYE0 955 aa13.06□□□□□ -0.32
CDC42SE1-202ENST00000439374 KNSTRNQ9Y448 316 aa13.06□□□□□ -0.32
CDC42SE1-202ENST00000439374 ROCK1Q13464 1354 aa13.06□□□□□ -0.32
CDC42SE1-202ENST00000439374 SAFB2Q14151 953 aaKnown RBP eCLIP13.05□□□□□ -0.32
CDC42SE1-202ENST00000439374 GZF1Q9H116 711 aaPredicted RBP13.05□□□□□ -0.32
CDC42SE1-202ENST00000439374 CCDC144AA2RUR9 1427 aa13.05□□□□□ -0.32
CDC42SE1-202ENST00000439374 TCOF1Q13428 1488 aaKnown RBP13.05□□□□□ -0.32
CDC42SE1-202ENST00000439374 PBRM1Q86U86 1689 aa13.04□□□□□ -0.32
CDC42SE1-202ENST00000439374 TMF1P82094 1093 aa13.04□□□□□ -0.32
CDC42SE1-202ENST00000439374 CRBNQ96SW2 442 aa13.04□□□□□ -0.32
CDC42SE1-202ENST00000439374 GGT6Q6P531 493 aa13.04□□□□□ -0.32
CDC42SE1-202ENST00000439374 FRAT2O75474 233 aaPredicted RBP13.03□□□□□ -0.32
CDC42SE1-202ENST00000439374 NFKBIBQ15653 356 aa13.03□□□□□ -0.32
CDC42SE1-202ENST00000439374 EFCAB2Q5VUJ9 269 aa13.03□□□□□ -0.32
CDC42SE1-202ENST00000439374 EIF4G3O43432 1585 aaKnown RBP13.03□□□□□ -0.32
CDC42SE1-202ENST00000439374 KTN1Q86UP2 1357 aaKnown RBP13.02□□□□□ -0.33
CDC42SE1-202ENST00000439374 RRP1P56182 461 aaKnown RBP13.02□□□□□ -0.33
CDC42SE1-202ENST00000439374 ATP10BO94823 1461 aa13.02□□□□□ -0.33
CDC42SE1-202ENST00000439374 MYBBP1AQ9BQG0 1328 aaKnown RBP13.01□□□□□ -0.33
CDC42SE1-202ENST00000439374 PZPP20742 1482 aa13.01□□□□□ -0.33
CDC42SE1-202ENST00000439374 C20orf194Q5TEA3 1177 aa13.01□□□□□ -0.33
CDC42SE1-202ENST00000439374 NLRP13Q86W25 1043 aa13.01□□□□□ -0.33
CDC42SE1-202ENST00000439374 SYNJ2O15056 1496 aa13.01□□□□□ -0.33
CDC42SE1-202ENST00000439374 KIAA0556O60303 1618 aa13.01□□□□□ -0.33
CDC42SE1-202ENST00000439374 GSE1Q14687 1217 aa13.01□□□□□ -0.33
CDC42SE1-202ENST00000439374 ERICH6BQ5W0A0 696 aa13.01□□□□□ -0.33
CDC42SE1-202ENST00000439374 MAGI1Q96QZ7 1491 aaPredicted RBP13□□□□□ -0.33
CDC42SE1-202ENST00000439374 SPAG9O60271 1321 aaKnown RBP13□□□□□ -0.33
CDC42SE1-202ENST00000439374 RAPGEF6Q8TEU7 1601 aa13□□□□□ -0.33
CDC42SE1-202ENST00000439374 RALBP1Q15311 655 aa13□□□□□ -0.33
CDC42SE1-202ENST00000439374 KIF14Q15058 1648 aa12.99□□□□□ -0.33
CDC42SE1-202ENST00000439374 KDM5BQ9UGL1 1544 aa12.99□□□□□ -0.33
CDC42SE1-202ENST00000439374 PPM1GO15355 546 aaPredicted RBP12.99□□□□□ -0.33
CDC42SE1-202ENST00000439374 CANXP27824 592 aaKnown RBP12.98□□□□□ -0.33
CDC42SE1-202ENST00000439374 TEX14Q8IWB6 1497 aa12.97□□□□□ -0.33
CDC42SE1-202ENST00000439374 ARID3AQ99856 593 aa12.97□□□□□ -0.33
CDC42SE1-202ENST00000439374 NPM1P06748 294 aaKnown RBP eCLIP12.97□□□□□ -0.33
CDC42SE1-202ENST00000439374 ADAMTS8Q9UP79 889 aa12.97□□□□□ -0.33
CDC42SE1-202ENST00000439374 PLPPR3Q6T4P5 718 aa12.96□□□□□ -0.33
CDC42SE1-202ENST00000439374 NAP1L5Q96NT1 182 aaPredicted RBP12.96□□□□□ -0.33
CDC42SE1-202ENST00000439374 ARHGAP5Q13017 1502 aa12.96□□□□□ -0.33
CDC42SE1-202ENST00000439374 BACH2Q9BYV9 841 aa12.96□□□□□ -0.34
CDC42SE1-202ENST00000439374 TRAK1Q9UPV9 953 aa12.96□□□□□ -0.34
CDC42SE1-202ENST00000439374 DHX29Q7Z478 1369 aaKnown RBP12.95□□□□□ -0.34
CDC42SE1-202ENST00000439374 TCERG1O14776 1098 aaKnown RBP12.95□□□□□ -0.34
CDC42SE1-202ENST00000439374 CFAP70Q5T0N1 1121 aa12.95□□□□□ -0.34
CDC42SE1-202ENST00000439374 RRP7AQ9Y3A4 280 aaKnown RBP12.94□□□□□ -0.34
CDC42SE1-202ENST00000439374 STK26Q9P289 416 aa12.94□□□□□ -0.34
CDC42SE1-202ENST00000439374 PLEKHH2Q8IVE3 1493 aa12.94□□□□□ -0.34
CDC42SE1-202ENST00000439374 RSPH4AQ5TD94 716 aa12.93□□□□□ -0.34
CDC42SE1-202ENST00000439374 CEP170Q5SW79 1584 aa12.93□□□□□ -0.34
CDC42SE1-202ENST00000439374 SPATA31E1Q6ZUB1 1445 aa12.93□□□□□ -0.34
CDC42SE1-202ENST00000439374 TMEM132EQ6IEE7 984 aa12.92□□□□□ -0.34
CDC42SE1-202ENST00000439374 ZBTB7CA1YPR0 619 aa12.92□□□□□ -0.34
CDC42SE1-202ENST00000439374 DNMT1P26358 1616 aaKnown RBP12.91□□□□□ -0.34
CDC42SE1-202ENST00000439374 DISP3Q9P2K9 1392 aa12.91□□□□□ -0.34
CDC42SE1-202ENST00000439374 APAF1O14727 1248 aa12.9□□□□□ -0.34
CDC42SE1-202ENST00000439374 POGKQ9P215 609 aa12.9□□□□□ -0.34
CDC42SE1-202ENST00000439374 VSIG10Q8N0Z9 540 aa12.88□□□□□ -0.35
CDC42SE1-202ENST00000439374 DDRGK1Q96HY6 314 aa12.88□□□□□ -0.35
CDC42SE1-202ENST00000439374 BCL2L13Q9BXK5 485 aa12.88□□□□□ -0.35
CDC42SE1-202ENST00000439374 GCC2Q8IWJ2 1684 aa12.88□□□□□ -0.35
CDC42SE1-202ENST00000439374 STAG3Q9UJ98 1225 aa12.86□□□□□ -0.35
CDC42SE1-202ENST00000439374 SMG6Q86US8 1419 aaKnown RBP12.86□□□□□ -0.35
CDC42SE1-202ENST00000439374 CCDC141Q6ZP82 1450 aa12.86□□□□□ -0.35
CDC42SE1-202ENST00000439374 BRD4O60885 1362 aaPredicted RBP12.85□□□□□ -0.35
CDC42SE1-202ENST00000439374 PPP2R1AP30153 589 aa12.85□□□□□ -0.35
CDC42SE1-202ENST00000439374 TESK2Q96S53 571 aa12.85□□□□□ -0.35
CDC42SE1-202ENST00000439374 MLECQ14165 292 aa12.85□□□□□ -0.35
CDC42SE1-202ENST00000439374 CLUAP1Q96AJ1 413 aa12.85□□□□□ -0.35
CDC42SE1-202ENST00000439374 SCAPERQ9BY12 1400 aa12.85□□□□□ -0.35
CDC42SE1-202ENST00000439374 CDCA8Q53HL2 280 aa12.84□□□□□ -0.35
CDC42SE1-202ENST00000439374 MORC1Q86VD1 984 aa12.84□□□□□ -0.35
CDC42SE1-202ENST00000439374 SYCP2Q9BX26 1530 aa12.84□□□□□ -0.35
CDC42SE1-202ENST00000439374 PER1O15534 1290 aaPredicted RBP12.83□□□□□ -0.35
CDC42SE1-202ENST00000439374 NUP160Q12769 1436 aa12.83□□□□□ -0.36
CDC42SE1-202ENST00000439374 U2SURPO15042 1029 aaKnown RBP12.83□□□□□ -0.36
CDC42SE1-202ENST00000439374 GOLGA2Q08379 1002 aa12.83□□□□□ -0.36
CDC42SE1-202ENST00000439374 FOXD4L1Q9NU39 408 aa12.83□□□□□ -0.36
CDC42SE1-202ENST00000439374 SLC12A5Q9H2X9 1139 aa12.82□□□□□ -0.36
CDC42SE1-202ENST00000439374 KANK1Q14678 1352 aa12.82□□□□□ -0.36
CDC42SE1-202ENST00000439374 ERBINQ96RT1 1412 aa12.81□□□□□ -0.36
CDC42SE1-202ENST00000439374 ADGRF5Q8IZF2 1346 aa12.81□□□□□ -0.36
CDC42SE1-202ENST00000439374 BCAR3O75815 825 aa12.81□□□□□ -0.36
CDC42SE1-202ENST00000439374 TRAPPC8Q9Y2L5 1435 aa12.81□□□□□ -0.36
CDC42SE1-202ENST00000439374 WASHC2CQ9Y4E1 1318 aa12.81□□□□□ -0.36
CDC42SE1-202ENST00000439374 TPRNQ4KMQ1 711 aa12.81□□□□□ -0.36
CDC42SE1-202ENST00000439374 RAPGEF3O95398 923 aa12.8□□□□□ -0.36
CDC42SE1-202ENST00000439374 USP35Q9P2H5 1018 aa12.8□□□□□ -0.36
CDC42SE1-202ENST00000439374 BCORL1Q5H9F3 1711 aa12.8□□□□□ -0.36
CDC42SE1-202ENST00000439374 FAM135AQ9P2D6 1515 aa12.79□□□□□ -0.36
CDC42SE1-202ENST00000439374 SRPK2P78362 688 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms