RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 ABCA6Q8N139 1617 aa12.43□□□□□ -0.42
VPS50-204ENST00000438395 ITSN2Q9NZM3 1697 aa12.42□□□□□ -0.42
VPS50-204ENST00000438395 CNTLNQ9NXG0 1405 aa12.42□□□□□ -0.42
VPS50-204ENST00000438395 AGLP35573 1532 aa12.42□□□□□ -0.42
VPS50-204ENST00000438395 SYCP2Q9BX26 1530 aa12.42□□□□□ -0.42
VPS50-204ENST00000438395 CHADLQ6NUI6 762 aa12.41□□□□□ -0.42
VPS50-204ENST00000438395 PREX1Q8TCU6 1659 aa12.41□□□□□ -0.42
VPS50-204ENST00000438395 GPATCH8Q9UKJ3 1502 aaKnown RBP12.41□□□□□ -0.42
VPS50-204ENST00000438395 PRR29P0C7W0 189 aa12.4□□□□□ -0.42
VPS50-204ENST00000438395 HNRNPMP52272 730 aaKnown RBP eCLIP12.4□□□□□ -0.42
VPS50-204ENST00000438395 CDC42BPAQ5VT25 1732 aa12.4□□□□□ -0.43
VPS50-204ENST00000438395 SAMD9LQ8IVG5 1584 aa12.39□□□□□ -0.43
VPS50-204ENST00000438395 KIAA1107Q9UPP5 1409 aa12.39□□□□□ -0.43
VPS50-204ENST00000438395 CEP162Q5TB80 1403 aa12.38□□□□□ -0.43
VPS50-204ENST00000438395 EHBP1L1Q8N3D4 1523 aa12.37□□□□□ -0.43
VPS50-204ENST00000438395 CERKQ8TCT0 537 aa12.37□□□□□ -0.43
VPS50-204ENST00000438395 ATP7AQ04656 1500 aa12.37□□□□□ -0.43
VPS50-204ENST00000438395 KIDINS220Q9ULH0 1771 aa12.36□□□□□ -0.43
VPS50-204ENST00000438395 HAX1O00165 279 aa12.35□□□□□ -0.43
VPS50-204ENST00000438395 A2MP01023 1474 aa12.34□□□□□ -0.43
VPS50-204ENST00000438395 NPATQ14207 1427 aa12.33□□□□□ -0.44
VPS50-204ENST00000438395 C3P01024 1663 aa12.32□□□□□ -0.44
VPS50-204ENST00000438395 TIAM1Q13009 1591 aa12.32□□□□□ -0.44
VPS50-204ENST00000438395 INO80Q9ULG1 1556 aaPredicted RBP12.32□□□□□ -0.44
VPS50-204ENST00000438395 GGT6Q6P531 493 aa12.32□□□□□ -0.44
VPS50-204ENST00000438395 ZNF644Q9H582 1327 aaPredicted RBP12.31□□□□□ -0.44
VPS50-204ENST00000438395 ZMYM3Q14202 1370 aa12.3□□□□□ -0.44
VPS50-204ENST00000438395 SETD1BQ9UPS6 1966 aaKnown RBP12.3□□□□□ -0.44
VPS50-204ENST00000438395 EVX2Q03828 476 aa12.3□□□□□ -0.44
VPS50-204ENST00000438395 PTPRTO14522 1441 aa12.29□□□□□ -0.44
VPS50-204ENST00000438395 SUPT6HQ7KZ85 1726 aaKnown RBP12.29□□□□□ -0.44
VPS50-204ENST00000438395 PLXNC1O60486 1568 aa12.29□□□□□ -0.44
VPS50-204ENST00000438395 MROH2AA6NES4 1674 aa12.29□□□□□ -0.44
VPS50-204ENST00000438395 NCOA2Q15596 1464 aa12.28□□□□□ -0.44
VPS50-204ENST00000438395 RTEL1-TNFRSF6BF6WH68 1400 aa12.28□□□□□ -0.44
VPS50-204ENST00000438395 NCOA1Q15788 1441 aa12.28□□□□□ -0.44
VPS50-204ENST00000438395 CCDC141Q6ZP82 1450 aa12.27□□□□□ -0.44
VPS50-204ENST00000438395 ADGBQ8N7X0 1667 aa12.26□□□□□ -0.45
VPS50-204ENST00000438395 RSPH4AQ5TD94 716 aa12.26□□□□□ -0.45
VPS50-204ENST00000438395 CAMSAP2Q08AD1 1489 aa12.26□□□□□ -0.45
VPS50-204ENST00000438395 MBD5Q9P267 1494 aa12.26□□□□□ -0.45
VPS50-204ENST00000438395 KIF3BO15066 747 aa12.25□□□□□ -0.45
VPS50-204ENST00000438395 TSPY4P0CV99 314 aa12.25□□□□□ -0.45
VPS50-204ENST00000438395 TSPY10P0CW01 314 aa12.25□□□□□ -0.45
VPS50-204ENST00000438395 DHX29Q7Z478 1369 aaKnown RBP12.25□□□□□ -0.45
VPS50-204ENST00000438395 VPS8Q8N3P4 1428 aa12.25□□□□□ -0.45
VPS50-204ENST00000438395 CLTCQ00610 1675 aaKnown RBP12.25□□□□□ -0.45
VPS50-204ENST00000438395 CAMSAP1Q5T5Y3 1602 aa12.24□□□□□ -0.45
VPS50-204ENST00000438395 STRCQ7RTU9 1775 aa12.24□□□□□ -0.45
VPS50-204ENST00000438395 SP7Q8TDD2 431 aaPredicted RBP12.24□□□□□ -0.45
VPS50-204ENST00000438395 PTPRKQ15262 1439 aa12.23□□□□□ -0.45
VPS50-204ENST00000438395 PKD2Q13563 968 aa12.22□□□□□ -0.45
VPS50-204ENST00000438395 MYO3AQ8NEV4 1616 aa12.22□□□□□ -0.45
VPS50-204ENST00000438395 CEP170BQ9Y4F5 1589 aaPredicted RBP12.22□□□□□ -0.45
VPS50-204ENST00000438395 NCKAP5LQ9HCH0 1330 aa12.21□□□□□ -0.45
VPS50-204ENST00000438395 WASHC2CQ9Y4E1 1318 aa12.21□□□□□ -0.45
VPS50-204ENST00000438395 KDM5DQ9BY66 1539 aa12.21□□□□□ -0.46
VPS50-204ENST00000438395 FAM135AQ9P2D6 1515 aa12.21□□□□□ -0.46
VPS50-204ENST00000438395 PLA2R1Q13018 1463 aa12.21□□□□□ -0.46
VPS50-204ENST00000438395 LRRC9Q6ZRR7 1453 aa12.21□□□□□ -0.46
VPS50-204ENST00000438395 TNRQ92752 1358 aa12.2□□□□□ -0.46
VPS50-204ENST00000438395 LOC105371045A0A1W2PR82 267 aa12.2□□□□□ -0.46
VPS50-204ENST00000438395 STAG3Q9UJ98 1225 aa12.2□□□□□ -0.46
VPS50-204ENST00000438395 PROM2Q8N271 834 aa12.19□□□□□ -0.46
VPS50-204ENST00000438395 A2ML1A8K2U0 1454 aa12.19□□□□□ -0.46
VPS50-204ENST00000438395 ZNF142P52746 1687 aaPredicted RBP12.19□□□□□ -0.46
VPS50-204ENST00000438395 ARHGEF5Q12774 1597 aa12.18□□□□□ -0.46
VPS50-204ENST00000438395 CREBZFQ9NS37 354 aa12.18□□□□□ -0.46
VPS50-204ENST00000438395 IQSEC2Q5JU85 1478 aa12.18□□□□□ -0.46
VPS50-204ENST00000438395 PZPP20742 1482 aa12.17□□□□□ -0.46
VPS50-204ENST00000438395 FARP1Q9Y4F1 1045 aaPredicted RBP12.17□□□□□ -0.46
VPS50-204ENST00000438395 ZNF335Q9H4Z2 1342 aaPredicted RBP12.16□□□□□ -0.46
VPS50-204ENST00000438395 TCOF1Q13428 1488 aaKnown RBP12.16□□□□□ -0.46
VPS50-204ENST00000438395 FKBP8Q14318 412 aa12.16□□□□□ -0.46
VPS50-204ENST00000438395 MYOM3Q5VTT5 1437 aa12.16□□□□□ -0.46
VPS50-204ENST00000438395 MAP3K1Q13233 1512 aa12.16□□□□□ -0.46
VPS50-204ENST00000438395 LTBP4Q8N2S1 1624 aa12.15□□□□□ -0.46
VPS50-204ENST00000438395 MIA2Q96PC5 1412 aa12.15□□□□□ -0.46
VPS50-204ENST00000438395 C19orf67A6NJJ6 358 aa12.15□□□□□ -0.46
VPS50-204ENST00000438395 FBXO31Q5XUX0 539 aaPredicted RBP12.15□□□□□ -0.46
VPS50-204ENST00000438395 DISP3Q9P2K9 1392 aa12.15□□□□□ -0.46
VPS50-204ENST00000438395 UBAP1LF5GYI3 381 aa12.14□□□□□ -0.47
VPS50-204ENST00000438395 KANK4Q5T7N3 995 aaPredicted RBP12.13□□□□□ -0.47
VPS50-204ENST00000438395 THEMISQ8N1K5 641 aaPredicted RBP12.13□□□□□ -0.47
VPS50-204ENST00000438395 NLRP1Q9C000 1473 aa12.13□□□□□ -0.47
VPS50-204ENST00000438395 ANKLE2Q86XL3 938 aa12.12□□□□□ -0.47
VPS50-204ENST00000438395 MAST1Q9Y2H9 1570 aa12.11□□□□□ -0.47
VPS50-204ENST00000438395 DNMT1P26358 1616 aaKnown RBP12.11□□□□□ -0.47
VPS50-204ENST00000438395 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.1□□□□□ -0.47
VPS50-204ENST00000438395 KIF15Q9NS87 1388 aa12.1□□□□□ -0.47
VPS50-204ENST00000438395 UGGT1Q9NYU2 1555 aa12.09□□□□□ -0.47
VPS50-204ENST00000438395 RNF17Q9BXT8 1623 aaKnown RBP12.09□□□□□ -0.47
VPS50-204ENST00000438395 ABCC3O15438 1527 aa12.09□□□□□ -0.47
VPS50-204ENST00000438395 DUOX2Q9NRD8 1548 aa12.09□□□□□ -0.47
VPS50-204ENST00000438395 EIF2AK4Q9P2K8 1649 aaKnown RBP12.08□□□□□ -0.48
VPS50-204ENST00000438395 ZC3H13Q5T200 1668 aaKnown RBP12.08□□□□□ -0.48
VPS50-204ENST00000438395 SHANK2Q9UPX8 1470 aa12.08□□□□□ -0.48
VPS50-204ENST00000438395 KANK1Q14678 1352 aa12.07□□□□□ -0.48
VPS50-204ENST00000438395 NPHP4O75161 1426 aaPredicted RBP12.07□□□□□ -0.48
VPS50-204ENST00000438395 CPS1P31327 1500 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms