RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 WASHC2AQ641Q2 1341 aa13.26□□□□□ -0.29
CUX1-206ENST00000437600 PZPP20742 1482 aa13.25□□□□□ -0.29
CUX1-206ENST00000437600 FKBP8Q14318 412 aa13.25□□□□□ -0.29
CUX1-206ENST00000437600 CCDC184Q52MB2 194 aa13.25□□□□□ -0.29
CUX1-206ENST00000437600 PLEKHH2Q8IVE3 1493 aa13.25□□□□□ -0.29
CUX1-206ENST00000437600 PPRC1Q5VV67 1664 aaKnown RBP13.24□□□□□ -0.29
CUX1-206ENST00000437600 ARAP3Q8WWN8 1544 aa13.24□□□□□ -0.29
CUX1-206ENST00000437600 ADGRL2O95490 1459 aa13.24□□□□□ -0.29
CUX1-206ENST00000437600 EIF4G2P78344 907 aaKnown RBP eCLIP13.23□□□□□ -0.291e-6■■■■■ 32.2
CUX1-206ENST00000437600 SHANK2Q9UPX8 1470 aa13.23□□□□□ -0.29
CUX1-206ENST00000437600 RSPH4AQ5TD94 716 aa13.22□□□□□ -0.29
CUX1-206ENST00000437600 KDM2AQ9Y2K7 1162 aa13.22□□□□□ -0.29
CUX1-206ENST00000437600 ZFYVE16Q7Z3T8 1539 aa13.21□□□□□ -0.29
CUX1-206ENST00000437600 GLI2P10070 1586 aa13.21□□□□□ -0.29
CUX1-206ENST00000437600 ATP7AQ04656 1500 aa13.2□□□□□ -0.3
CUX1-206ENST00000437600 IRX6P78412 446 aaPredicted RBP13.2□□□□□ -0.3
CUX1-206ENST00000437600 POGZQ7Z3K3 1410 aa13.2□□□□□ -0.3
CUX1-206ENST00000437600 KIDINS220Q9ULH0 1771 aa13.19□□□□□ -0.3
CUX1-206ENST00000437600 HNRNPUQ00839 825 aaKnown RBP eCLIP13.19□□□□□ -0.31e-6■■■■□ 21.8
CUX1-206ENST00000437600 COL17A1Q9UMD9 1497 aaPredicted RBP13.19□□□□□ -0.3
CUX1-206ENST00000437600 ZNF518AQ6AHZ1 1483 aa13.19□□□□□ -0.3
CUX1-206ENST00000437600 RPRD2Q5VT52 1461 aaKnown RBP13.18□□□□□ -0.3
CUX1-206ENST00000437600 FAM9BQ8IZU0 186 aa13.18□□□□□ -0.3
CUX1-206ENST00000437600 KIF3BO15066 747 aa13.18□□□□□ -0.3
CUX1-206ENST00000437600 RGL3Q3MIN7 710 aa13.18□□□□□ -0.3
CUX1-206ENST00000437600 CFAP74Q9C0B2 1584 aa13.17□□□□□ -0.3
CUX1-206ENST00000437600 NEO1Q92859 1461 aa13.17□□□□□ -0.3
CUX1-206ENST00000437600 MAST1Q9Y2H9 1570 aa13.17□□□□□ -0.3
CUX1-206ENST00000437600 YEATS2Q9ULM3 1422 aa13.17□□□□□ -0.3
CUX1-206ENST00000437600 INO80Q9ULG1 1556 aaPredicted RBP13.17□□□□□ -0.3
CUX1-206ENST00000437600 RICTORQ6R327 1708 aa13.16□□□□□ -0.3
CUX1-206ENST00000437600 PLXNC1O60486 1568 aa13.15□□□□□ -0.3
CUX1-206ENST00000437600 FRMPD1Q5SYB0 1578 aa13.14□□□□□ -0.31
CUX1-206ENST00000437600 CCER2I3L3R5 266 aa13.14□□□□□ -0.31
CUX1-206ENST00000437600 GGT6Q6P531 493 aa13.14□□□□□ -0.31
CUX1-206ENST00000437600 CFAP65Q6ZU64 1925 aaKnown RBP13.14□□□□□ -0.31
CUX1-206ENST00000437600 TEX14Q8IWB6 1497 aa13.14□□□□□ -0.31
CUX1-206ENST00000437600 ABCA6Q8N139 1617 aa13.14□□□□□ -0.31
CUX1-206ENST00000437600 DUOX2Q9NRD8 1548 aa13.13□□□□□ -0.31
CUX1-206ENST00000437600 HECW2Q9P2P5 1572 aa13.13□□□□□ -0.31
CUX1-206ENST00000437600 DCAF11Q8TEB1 546 aa13.13□□□□□ -0.31
CUX1-206ENST00000437600 KDM5CP41229 1560 aa13.13□□□□□ -0.31
CUX1-206ENST00000437600 RTEL1-TNFRSF6BF6WH68 1400 aa13.11□□□□□ -0.31
CUX1-206ENST00000437600 MLECQ14165 292 aa13.11□□□□□ -0.31
CUX1-206ENST00000437600 FAM135AQ9P2D6 1515 aa13.1□□□□□ -0.31
CUX1-206ENST00000437600 KIF7Q2M1P5 1343 aa13.09□□□□□ -0.31
CUX1-206ENST00000437600 MRS2Q9HD23 443 aa13.09□□□□□ -0.31
CUX1-206ENST00000437600 A2MP01023 1474 aa13.09□□□□□ -0.31
CUX1-206ENST00000437600 DHX29Q7Z478 1369 aaKnown RBP13.09□□□□□ -0.31
CUX1-206ENST00000437600 MLH3Q9UHC1 1453 aa13.08□□□□□ -0.32
CUX1-206ENST00000437600 ERBINQ96RT1 1412 aa13.08□□□□□ -0.32
CUX1-206ENST00000437600 DIP2CQ9Y2E4 1556 aa13.08□□□□□ -0.32
CUX1-206ENST00000437600 PRKRIP1Q9H875 184 aaPredicted RBP13.07□□□□□ -0.32
CUX1-206ENST00000437600 SIGLEC1Q9BZZ2 1709 aa13.07□□□□□ -0.32
CUX1-206ENST00000437600 NEFLP07196 543 aa13.06□□□□□ -0.32
CUX1-206ENST00000437600 CCDC7Q96M83 1385 aa13.06□□□□□ -0.32
CUX1-206ENST00000437600 TSHZ2Q9NRE2 1034 aa13.06□□□□□ -0.32
CUX1-206ENST00000437600 UNC13BO14795 1591 aa13.05□□□□□ -0.32
CUX1-206ENST00000437600 CCDC144AA2RUR9 1427 aa13.04□□□□□ -0.32
CUX1-206ENST00000437600 CARD11Q9BXL7 1154 aa13.04□□□□□ -0.32
CUX1-206ENST00000437600 CEP152O94986 1710 aa13.03□□□□□ -0.32
CUX1-206ENST00000437600 PLA2R1Q13018 1463 aa13.03□□□□□ -0.32
CUX1-206ENST00000437600 MROH1Q8NDA8 1641 aa13.03□□□□□ -0.32
CUX1-206ENST00000437600 ST20-MTHFSA0A0A6YYL1 179 aa13.02□□□□□ -0.32
CUX1-206ENST00000437600 PLPPR3Q6T4P5 718 aa13.02□□□□□ -0.33
CUX1-206ENST00000437600 ARID4BQ4LE39 1312 aaPredicted RBP13.02□□□□□ -0.33
CUX1-206ENST00000437600 KDM5DQ9BY66 1539 aa13.02□□□□□ -0.33
CUX1-206ENST00000437600 NBPF1Q3BBV0 1214 aa13.02□□□□□ -0.33
CUX1-206ENST00000437600 USP47Q96K76 1375 aa13.01□□□□□ -0.33
CUX1-206ENST00000437600 IQGAP3Q86VI3 1631 aa13.01□□□□□ -0.33
CUX1-206ENST00000437600 WASHC2CQ9Y4E1 1318 aa13.01□□□□□ -0.33
CUX1-206ENST00000437600 E9PCH4 1651 aa13□□□□□ -0.33
CUX1-206ENST00000437600 DEPDC5O75140 1603 aa13□□□□□ -0.33
CUX1-206ENST00000437600 ZMYM4Q5VZL5 1548 aa13□□□□□ -0.33
CUX1-206ENST00000437600 MAGI2Q86UL8 1455 aa13□□□□□ -0.33
CUX1-206ENST00000437600 SENP3Q9H4L4 574 aaPredicted RBP12.99□□□□□ -0.33
CUX1-206ENST00000437600 SALL2Q9Y467 1007 aaPredicted RBP12.99□□□□□ -0.33
CUX1-206ENST00000437600 KANK1Q14678 1352 aa12.98□□□□□ -0.33
CUX1-206ENST00000437600 CNTLNQ9NXG0 1405 aa12.98□□□□□ -0.33
CUX1-206ENST00000437600 UGGT1Q9NYU2 1555 aa12.98□□□□□ -0.33
CUX1-206ENST00000437600 ATP10AO60312 1499 aa12.97□□□□□ -0.33
CUX1-206ENST00000437600 EIF2AK4Q9P2K8 1649 aaKnown RBP12.97□□□□□ -0.33
CUX1-206ENST00000437600 SPATA31E1Q6ZUB1 1445 aa12.97□□□□□ -0.33
CUX1-206ENST00000437600 PRDM15P57071 1507 aaPredicted RBP12.97□□□□□ -0.33
CUX1-206ENST00000437600 ROCK2O75116 1388 aaKnown RBP12.97□□□□□ -0.33
CUX1-206ENST00000437600 ARHGEF40Q8TER5 1519 aa12.95□□□□□ -0.34
CUX1-206ENST00000437600 RNF17Q9BXT8 1623 aaKnown RBP12.94□□□□□ -0.34
CUX1-206ENST00000437600 CHGAP10645 457 aaKnown RBP12.94□□□□□ -0.34
CUX1-206ENST00000437600 FBXO31Q5XUX0 539 aaPredicted RBP12.94□□□□□ -0.34
CUX1-206ENST00000437600 ANP32EQ9BTT0 268 aa12.94□□□□□ -0.34
CUX1-206ENST00000437600 TET3O43151 1660 aa12.93□□□□□ -0.34
CUX1-206ENST00000437600 VWDEQ8N2E2 1590 aa12.93□□□□□ -0.34
CUX1-206ENST00000437600 NPATQ14207 1427 aa12.92□□□□□ -0.34
CUX1-206ENST00000437600 ABCC3O15438 1527 aa12.92□□□□□ -0.34
CUX1-206ENST00000437600 SPHKAPQ2M3C7 1700 aa12.91□□□□□ -0.34
CUX1-206ENST00000437600 EFCAB6Q5THR3 1501 aa12.91□□□□□ -0.34
CUX1-206ENST00000437600 BCORL1Q5H9F3 1711 aa12.9□□□□□ -0.34
CUX1-206ENST00000437600 NUTM2DQ5VT03 806 aaPredicted RBP12.9□□□□□ -0.34
CUX1-206ENST00000437600 TMC1Q8TDI8 760 aa12.9□□□□□ -0.34
CUX1-206ENST00000437600 UHRF1BP1Q6BDS2 1440 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms