RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 RSPH4AQ5TD94 716 aa8.85□□□□□ -0.99
VPS53-204ENST00000437048 ABCC9O60706 1549 aa8.85□□□□□ -0.99
VPS53-204ENST00000437048 KIF2AO00139 706 aaPredicted RBP8.85□□□□□ -0.99
VPS53-204ENST00000437048 ZRSR2Q15696 482 aaKnown RBP8.84□□□□□ -0.99
VPS53-204ENST00000437048 RNF20Q5VTR2 975 aa8.84□□□□□ -0.99
VPS53-204ENST00000437048 UACAQ9BZF9 1416 aa8.84□□□□□ -0.99
VPS53-204ENST00000437048 MCM2P49736 904 aa8.84□□□□□ -0.99
VPS53-204ENST00000437048 RGS3P49796 1198 aa8.83□□□□□ -1
VPS53-204ENST00000437048 ZNF771Q7L3S4 317 aaPredicted RBP8.83□□□□□ -1
VPS53-204ENST00000437048 CCDC39Q9UFE4 941 aa8.83□□□□□ -1
VPS53-204ENST00000437048 APPP05067 770 aa8.83□□□□□ -1
VPS53-204ENST00000437048 KIF15Q9NS87 1388 aa8.83□□□□□ -1
VPS53-204ENST00000437048 B4GALNT3Q6L9W6 998 aa8.83□□□□□ -1
VPS53-204ENST00000437048 ZNF777Q9ULD5 760 aaPredicted RBP8.83□□□□□ -1
VPS53-204ENST00000437048 PLEKHD1A6NEE1 506 aa8.82□□□□□ -1
VPS53-204ENST00000437048 HMGB1P09429 215 aaKnown RBP8.82□□□□□ -1
VPS53-204ENST00000437048 OS9Q13438 667 aaPredicted RBP8.82□□□□□ -1
VPS53-204ENST00000437048 NAP1L2Q9ULW6 460 aaPredicted RBP8.82□□□□□ -1
VPS53-204ENST00000437048 POLR3GO15318 223 aaPredicted RBP8.81□□□□□ -1
VPS53-204ENST00000437048 CHIC2Q9UKJ5 165 aa8.81□□□□□ -1
VPS53-204ENST00000437048 VSIG10Q8N0Z9 540 aa8.81□□□□□ -1
VPS53-204ENST00000437048 CHMP5Q9NZZ3 219 aa8.81□□□□□ -1
VPS53-204ENST00000437048 CPLX2Q6PUV4 134 aaKnown RBP8.81□□□□□ -1
VPS53-204ENST00000437048 FAM184AQ8NB25 1140 aa8.81□□□□□ -1
VPS53-204ENST00000437048 PIP4K2AP48426 406 aaPredicted RBP8.81□□□□□ -1
VPS53-204ENST00000437048 RUFY1Q96T51 708 aa8.8□□□□□ -1
VPS53-204ENST00000437048 HMGB1P1B2RPK0 211 aaPredicted RBP8.8□□□□□ -1
VPS53-204ENST00000437048 CCDC173Q0VFZ6 552 aa8.79□□□□□ -1
VPS53-204ENST00000437048 TSHZ2Q9NRE2 1034 aa8.79□□□□□ -1
VPS53-204ENST00000437048 PDCP20941 246 aa8.79□□□□□ -1
VPS53-204ENST00000437048 GOLGA2Q08379 1002 aa8.79□□□□□ -1
VPS53-204ENST00000437048 SPAG9O60271 1321 aaKnown RBP8.79□□□□□ -1
VPS53-204ENST00000437048 IQCEQ6IPM2 695 aa8.79□□□□□ -1
VPS53-204ENST00000437048 BECN2A8MW95 431 aa8.79□□□□□ -1
VPS53-204ENST00000437048 CCDC47Q96A33 483 aaKnown RBP8.79□□□□□ -1
VPS53-204ENST00000437048 WASHC2AQ641Q2 1341 aa8.78□□□□□ -1
VPS53-204ENST00000437048 WASHC2CQ9Y4E1 1318 aa8.78□□□□□ -1
VPS53-204ENST00000437048 EIF3JO75822 258 aaKnown RBP8.78□□□□□ -1
VPS53-204ENST00000437048 RUFY2Q8WXA3 655 aa8.78□□□□□ -1
VPS53-204ENST00000437048 CNTLNQ9NXG0 1405 aa8.78□□□□□ -1
VPS53-204ENST00000437048 LUC7LQ9NQ29 371 aaKnown RBP8.78□□□□□ -1
VPS53-204ENST00000437048 CCDC18Q5T9S5 1454 aa8.77□□□□□ -1.01
VPS53-204ENST00000437048 CFDP1Q9UEE9 299 aaPredicted RBP8.77□□□□□ -1.01
VPS53-204ENST00000437048 RABEP1Q15276 862 aa8.77□□□□□ -1.01
VPS53-204ENST00000437048 TUBB4BP68371 445 aa8.77□□□□□ -1.01
VPS53-204ENST00000437048 LEKR1Q6ZMV7 388 aa8.77□□□□□ -1.01
VPS53-204ENST00000437048 DEF6Q9H4E7 631 aa8.77□□□□□ -1.01
VPS53-204ENST00000437048 U2SURPO15042 1029 aaKnown RBP8.77□□□□□ -1.01
VPS53-204ENST00000437048 MCM5P33992 734 aa8.77□□□□□ -1.01
VPS53-204ENST00000437048 CUX1P39880 1505 aa8.77□□□□□ -1.01
VPS53-204ENST00000437048 SMARCA2P51531 1590 aa8.76□□□□□ -1.01
VPS53-204ENST00000437048 CIZ1Q9ULV3 898 aaPredicted RBP8.76□□□□□ -1.01
VPS53-204ENST00000437048 MCM3P25205 808 aa8.76□□□□□ -1.01
VPS53-204ENST00000437048 DDX49Q9Y6V7 483 aaKnown RBP8.76□□□□□ -1.01
VPS53-204ENST00000437048 ERLIN1O75477 346 aa8.76□□□□□ -1.01
VPS53-204ENST00000437048 MNS1Q8NEH6 495 aa8.76□□□□□ -1.01
VPS53-204ENST00000437048 BCL11BQ9C0K0 894 aaPredicted RBP8.76□□□□□ -1.01
VPS53-204ENST00000437048 E9PSI1 815 aa8.75□□□□□ -1.01
VPS53-204ENST00000437048 SLC4A3P48751 1232 aa8.75□□□□□ -1.01
VPS53-204ENST00000437048 SIN3AQ96ST3 1273 aa8.75□□□□□ -1.01
VPS53-204ENST00000437048 KDM2AQ9Y2K7 1162 aa8.75□□□□□ -1.01
VPS53-204ENST00000437048 CAVIN2O95810 425 aa8.75□□□□□ -1.01
VPS53-204ENST00000437048 CENPJQ9HC77 1338 aaPredicted RBP8.75□□□□□ -1.01
VPS53-204ENST00000437048 PPP1R15AO75807 674 aaPredicted RBP8.75□□□□□ -1.01
VPS53-204ENST00000437048 MYBBP1AQ9BQG0 1328 aaKnown RBP8.75□□□□□ -1.01
VPS53-204ENST00000437048 STK11IPQ8N1F8 1099 aa8.74□□□□□ -1.01
VPS53-204ENST00000437048 GBP3Q9H0R5 595 aa8.74□□□□□ -1.01
VPS53-204ENST00000437048 FRAT1Q92837 279 aaPredicted RBP8.74□□□□□ -1.01
VPS53-204ENST00000437048 CTR9Q6PD62 1173 aa8.74□□□□□ -1.01
VPS53-204ENST00000437048 CCDC7Q96M83 1385 aa8.74□□□□□ -1.01
VPS53-204ENST00000437048 ZKSCAN1P17029 563 aaPredicted RBP8.73□□□□□ -1.01
VPS53-204ENST00000437048 TUBB4AP04350 444 aa8.73□□□□□ -1.01
VPS53-204ENST00000437048 PLEKHH2Q8IVE3 1493 aa8.73□□□□□ -1.01
VPS53-204ENST00000437048 STK31Q9BXU1 1019 aa8.73□□□□□ -1.01
VPS53-204ENST00000437048 RTF1Q92541 710 aaKnown RBP8.73□□□□□ -1.01
VPS53-204ENST00000437048 CALCOCO1Q9P1Z2 691 aa8.73□□□□□ -1.01
VPS53-204ENST00000437048 NEFHP12036 1026 aa8.73□□□□□ -1.01
VPS53-204ENST00000437048 H0YHG0 523 aa8.72□□□□□ -1.01
VPS53-204ENST00000437048 DDX19BQ9UMR2 479 aa8.72□□□□□ -1.01
VPS53-204ENST00000437048 CT47B1P0C2W7 299 aaPredicted RBP8.72□□□□□ -1.01
VPS53-204ENST00000437048 PRKCSHP14314 528 aaPredicted RBP8.72□□□□□ -1.01
VPS53-204ENST00000437048 MIA2Q96PC5 1412 aa8.72□□□□□ -1.01
VPS53-204ENST00000437048 SLKQ9H2G2 1235 aaPredicted RBP8.72□□□□□ -1.01
VPS53-204ENST00000437048 CHGAP10645 457 aaKnown RBP8.72□□□□□ -1.01
VPS53-204ENST00000437048 CCDC144AA2RUR9 1427 aa8.72□□□□□ -1.01
VPS53-204ENST00000437048 DDX11Q96FC9 970 aa8.71□□□□□ -1.01
VPS53-204ENST00000437048 TERF2IPQ9NYB0 399 aa8.71□□□□□ -1.01
VPS53-204ENST00000437048 KIAA0754O94854 1291 aa8.71□□□□□ -1.01
VPS53-204ENST00000437048 DHX29Q7Z478 1369 aaKnown RBP8.71□□□□□ -1.02
VPS53-204ENST00000437048 CWC22Q9HCG8 908 aaKnown RBP8.71□□□□□ -1.02
VPS53-204ENST00000437048 PDE4AP27815 886 aa8.71□□□□□ -1.02
VPS53-204ENST00000437048 SF3A1Q15459 793 aaKnown RBP8.71□□□□□ -1.02
VPS53-204ENST00000437048 ANKRD18AQ8IVF6 992 aa8.71□□□□□ -1.02
VPS53-204ENST00000437048 ERLIN2O94905 339 aa8.71□□□□□ -1.02
VPS53-204ENST00000437048 NASPP49321 788 aaPredicted RBP8.71□□□□□ -1.02
VPS53-204ENST00000437048 HSP90AB4PQ58FF6 505 aa8.71□□□□□ -1.02
VPS53-204ENST00000437048 HDGFL2Q7Z4V5 671 aaPredicted RBP8.7□□□□□ -1.02
VPS53-204ENST00000437048 CREBRFQ8IUR6 639 aa8.7□□□□□ -1.02
VPS53-204ENST00000437048 MORC1Q86VD1 984 aa8.7□□□□□ -1.02
VPS53-204ENST00000437048 GOLGA6L10A0A0M3HER8 536 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms