RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 HMMRO75330 724 aa15.07■□□□□ 0
CCDC88A-207ENST00000436346 CCDC146Q8IYE0 955 aa15.07■□□□□ 0
CCDC88A-207ENST00000436346 RWDD1Q9H446 243 aaPredicted RBP15.07■□□□□ 0
CCDC88A-207ENST00000436346 EVA1CP58658 441 aa15.07■□□□□ 0
CCDC88A-207ENST00000436346 RCAN3Q9UKA8 241 aa15.06■□□□□ 0
CCDC88A-207ENST00000436346 SYAP1Q96A49 352 aaPredicted RBP15.06■□□□□ 0
CCDC88A-207ENST00000436346 MSH5O43196 834 aa15.06■□□□□ 0
CCDC88A-207ENST00000436346 CCDC34Q96HJ3 373 aa15.05■□□□□ 0
CCDC88A-207ENST00000436346 TOMM22Q9NS69 142 aa15.05■□□□□ 0
CCDC88A-207ENST00000436346 MPHOSPH9Q99550 1183 aa15.05■□□□□ -0
CCDC88A-207ENST00000436346 TPM4P67936 248 aa15.05■□□□□ -0
CCDC88A-207ENST00000436346 ANO8Q9HCE9 1232 aaPredicted RBP15.05■□□□□ -0
CCDC88A-207ENST00000436346 GZF1Q9H116 711 aaPredicted RBP15.05■□□□□ -0
CCDC88A-207ENST00000436346 NOL8Q76FK4 1167 aaKnown RBP15.04■□□□□ -0
CCDC88A-207ENST00000436346 TCEAL9Q9UHQ7 104 aa15.04■□□□□ -0
CCDC88A-207ENST00000436346 SUPT6HQ7KZ85 1726 aaKnown RBP15.04■□□□□ -0
CCDC88A-207ENST00000436346 CUX1P39880 1505 aa15.04■□□□□ -0
CCDC88A-207ENST00000436346 LMOD3Q0VAK6 560 aa15.03■□□□□ -0
CCDC88A-207ENST00000436346 PTMSP20962 102 aa15.03■□□□□ -0
CCDC88A-207ENST00000436346 HDAC5Q9UQL6 1122 aa15.03■□□□□ -0
CCDC88A-207ENST00000436346 A0A0U1RQG5 324 aaPredicted RBP15.03■□□□□ -0
CCDC88A-207ENST00000436346 MFAP1P55081 439 aaKnown RBP15.02■□□□□ -0
CCDC88A-207ENST00000436346 SLKQ9H2G2 1235 aaPredicted RBP15.02■□□□□ -0
CCDC88A-207ENST00000436346 C1orf141Q5JVX7 400 aa15.02□□□□□ -0.01
CCDC88A-207ENST00000436346 TRIM34Q9BYJ4 488 aa15.01□□□□□ -0.01
CCDC88A-207ENST00000436346 AEBP2Q6ZN18 517 aaPredicted RBP15.01□□□□□ -0.01
CCDC88A-207ENST00000436346 UNC13AQ9UPW8 1703 aa15□□□□□ -0.01
CCDC88A-207ENST00000436346 KIF16BQ96L93 1317 aa15□□□□□ -0.01
CCDC88A-207ENST00000436346 FANCD2Q9BXW9 1451 aa15□□□□□ -0.01
CCDC88A-207ENST00000436346 SYTL4Q96C24 671 aaPredicted RBP15□□□□□ -0.01
CCDC88A-207ENST00000436346 ARID3AQ99856 593 aa14.99□□□□□ -0.01
CCDC88A-207ENST00000436346 MARCH6O60337 910 aa14.99□□□□□ -0.01
CCDC88A-207ENST00000436346 KANK4Q5T7N3 995 aaPredicted RBP14.99□□□□□ -0.01
CCDC88A-207ENST00000436346 CGNL1Q0VF96 1302 aa14.99□□□□□ -0.01
CCDC88A-207ENST00000436346 PMFBP1Q8TBY8 1022 aa14.99□□□□□ -0.01
CCDC88A-207ENST00000436346 ARHGAP5Q13017 1502 aa14.99□□□□□ -0.01
CCDC88A-207ENST00000436346 RAD21O60216 631 aa14.98□□□□□ -0.01
CCDC88A-207ENST00000436346 CENPJQ9HC77 1338 aaPredicted RBP14.98□□□□□ -0.01
CCDC88A-207ENST00000436346 KIF15Q9NS87 1388 aa14.97□□□□□ -0.01
CCDC88A-207ENST00000436346 CSPP1Q1MSJ5 1256 aa14.97□□□□□ -0.01
CCDC88A-207ENST00000436346 CCER2I3L3R5 266 aa14.97□□□□□ -0.01
CCDC88A-207ENST00000436346 PES1O00541 588 aaKnown RBP14.96□□□□□ -0.01
CCDC88A-207ENST00000436346 FBXW7Q969H0 707 aa14.96□□□□□ -0.01
CCDC88A-207ENST00000436346 PHF14O94880 888 aa14.95□□□□□ -0.02
CCDC88A-207ENST00000436346 VPS37DQ86XT2 251 aa14.95□□□□□ -0.02
CCDC88A-207ENST00000436346 TTC5Q8N0Z6 440 aa14.95□□□□□ -0.02
CCDC88A-207ENST00000436346 COG3Q96JB2 828 aa14.95□□□□□ -0.02
CCDC88A-207ENST00000436346 NOL10Q9BSC4 688 aaKnown RBP14.95□□□□□ -0.02
CCDC88A-207ENST00000436346 TRAK1Q9UPV9 953 aa14.95□□□□□ -0.02
CCDC88A-207ENST00000436346 RRP7AQ9Y3A4 280 aaKnown RBP14.95□□□□□ -0.02
CCDC88A-207ENST00000436346 CLUAP1Q96AJ1 413 aa14.94□□□□□ -0.02
CCDC88A-207ENST00000436346 PHLDB1Q86UU1 1377 aa14.94□□□□□ -0.02
CCDC88A-207ENST00000436346 KLHL34Q8N239 644 aa14.94□□□□□ -0.02
CCDC88A-207ENST00000436346 FOXD4L1Q9NU39 408 aa14.94□□□□□ -0.02
CCDC88A-207ENST00000436346 H3BQV1 296 aa14.94□□□□□ -0.02
CCDC88A-207ENST00000436346 IFFO2Q5TF58 517 aa14.94□□□□□ -0.02
CCDC88A-207ENST00000436346 FOXD4L5Q5VV16 416 aaPredicted RBP14.93□□□□□ -0.02
CCDC88A-207ENST00000436346 FOXD4L4Q8WXT5 416 aaPredicted RBP14.93□□□□□ -0.02
CCDC88A-207ENST00000436346 EVC2Q86UK5 1308 aa14.92□□□□□ -0.02
CCDC88A-207ENST00000436346 ST18O60284 1047 aa14.92□□□□□ -0.02
CCDC88A-207ENST00000436346 AMOTL1Q8IY63 956 aa14.92□□□□□ -0.02
CCDC88A-207ENST00000436346 NGEFQ8N5V2 710 aa14.92□□□□□ -0.02
CCDC88A-207ENST00000436346 CEP89Q96ST8 783 aa14.92□□□□□ -0.02
CCDC88A-207ENST00000436346 CTDP1Q9Y5B0 961 aaPredicted RBP14.92□□□□□ -0.02
CCDC88A-207ENST00000436346 GOLGA6L1Q8N7Z2 621 aa14.92□□□□□ -0.02
CCDC88A-207ENST00000436346 KIF21BO75037 1637 aa14.91□□□□□ -0.02
CCDC88A-207ENST00000436346 AKAP17AQ02040 695 aaKnown RBP14.91□□□□□ -0.02
CCDC88A-207ENST00000436346 TIMELESSQ9UNS1 1208 aa14.91□□□□□ -0.02
CCDC88A-207ENST00000436346 PSME1Q06323 249 aa14.9□□□□□ -0.02
CCDC88A-207ENST00000436346 TPD52L1Q16890 204 aaPredicted RBP14.9□□□□□ -0.02
CCDC88A-207ENST00000436346 GAPVD1Q14C86 1478 aa14.9□□□□□ -0.02
CCDC88A-207ENST00000436346 KIF3AQ9Y496 699 aa14.9□□□□□ -0.02
CCDC88A-207ENST00000436346 RILPL2Q969X0 211 aa14.9□□□□□ -0.02
CCDC88A-207ENST00000436346 C9orf78Q9NZ63 289 aaPredicted RBP14.89□□□□□ -0.03
CCDC88A-207ENST00000436346 KRI1Q8N9T8 703 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-207ENST00000436346 NEXNQ0ZGT2 675 aa14.88□□□□□ -0.03
CCDC88A-207ENST00000436346 PHF23Q9BUL5 403 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-207ENST00000436346 CNKSR2Q8WXI2 1034 aa14.88□□□□□ -0.03
CCDC88A-207ENST00000436346 HECW1Q76N89 1606 aa14.88□□□□□ -0.03
CCDC88A-207ENST00000436346 SF3A1Q15459 793 aaKnown RBP14.88□□□□□ -0.03
CCDC88A-207ENST00000436346 RSPH4AQ5TD94 716 aa14.88□□□□□ -0.03
CCDC88A-207ENST00000436346 MINK1Q8N4C8 1332 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-207ENST00000436346 CYB5RLQ6IPT4 315 aa14.88□□□□□ -0.03
CCDC88A-207ENST00000436346 CWC22Q9HCG8 908 aaKnown RBP14.87□□□□□ -0.03
CCDC88A-207ENST00000436346 TPM3P06753 285 aa14.87□□□□□ -0.03
CCDC88A-207ENST00000436346 USP47Q96K76 1375 aa14.87□□□□□ -0.03
CCDC88A-207ENST00000436346 MCTP1Q6DN14 999 aa14.86□□□□□ -0.03
CCDC88A-207ENST00000436346 TEFQ10587 303 aa14.86□□□□□ -0.03
CCDC88A-207ENST00000436346 CADPSQ9ULU8 1353 aa14.86□□□□□ -0.03
CCDC88A-207ENST00000436346 NLRP13Q86W25 1043 aa14.86□□□□□ -0.03
CCDC88A-207ENST00000436346 LRRFIP1Q32MZ4 808 aaKnown RBP14.85□□□□□ -0.03
CCDC88A-207ENST00000436346 NECTIN2Q92692 538 aa14.85□□□□□ -0.03
CCDC88A-207ENST00000436346 TCERG1O14776 1098 aaKnown RBP14.85□□□□□ -0.03
CCDC88A-207ENST00000436346 DEKP35659 375 aaKnown RBP14.85□□□□□ -0.03
CCDC88A-207ENST00000436346 FGD5Q6ZNL6 1462 aa14.85□□□□□ -0.03
CCDC88A-207ENST00000436346 APPP05067 770 aa14.85□□□□□ -0.03
CCDC88A-207ENST00000436346 TSR1Q2NL82 804 aaKnown RBP14.85□□□□□ -0.03
CCDC88A-207ENST00000436346 EIF2S2P20042 333 aaKnown RBP14.84□□□□□ -0.03
CCDC88A-207ENST00000436346 DIAPH3Q9NSV4 1193 aa14.84□□□□□ -0.03
CCDC88A-207ENST00000436346 PTPRGP23470 1445 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 166.1 ms