RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 CCDC144AA2RUR9 1427 aa14.26□□□□□ -0.13
CD44-210ENST00000434472 PLCH2O75038 1416 aa14.26□□□□□ -0.13
CD44-210ENST00000434472 IQGAP3Q86VI3 1631 aa14.25□□□□□ -0.13
CD44-210ENST00000434472 ERBINQ96RT1 1412 aa14.25□□□□□ -0.13
CD44-210ENST00000434472 CCDC184Q52MB2 194 aa14.25□□□□□ -0.13
CD44-210ENST00000434472 FAM9BQ8IZU0 186 aa14.25□□□□□ -0.13
CD44-210ENST00000434472 DCAF11Q8TEB1 546 aa14.25□□□□□ -0.13
CD44-210ENST00000434472 KTN1Q86UP2 1357 aaKnown RBP14.25□□□□□ -0.13
CD44-210ENST00000434472 EFCAB2Q5VUJ9 269 aa14.24□□□□□ -0.13
CD44-210ENST00000434472 ERCC6L2Q5T890 1561 aa14.24□□□□□ -0.13
CD44-210ENST00000434472 ZCCHC11Q5TAX3 1644 aaKnown RBP14.23□□□□□ -0.13
CD44-210ENST00000434472 KDM2AQ9Y2K7 1162 aa14.23□□□□□ -0.13
CD44-210ENST00000434472 MAGI2Q86UL8 1455 aa14.22□□□□□ -0.13
CD44-210ENST00000434472 ATP10AO60312 1499 aa14.22□□□□□ -0.13
CD44-210ENST00000434472 ARAP3Q8WWN8 1544 aa14.22□□□□□ -0.13
CD44-210ENST00000434472 PRAG1Q86YV5 1406 aa14.21□□□□□ -0.13
CD44-210ENST00000434472 LAMC1P11047 1609 aa14.21□□□□□ -0.13
CD44-210ENST00000434472 TRPM1Q7Z4N2 1603 aa14.2□□□□□ -0.14
CD44-210ENST00000434472 ABCC1P33527 1531 aa14.2□□□□□ -0.14
CD44-210ENST00000434472 GPRASP1Q5JY77 1395 aa14.19□□□□□ -0.14
CD44-210ENST00000434472 POLR3GLQ9BT43 218 aa14.19□□□□□ -0.14
CD44-210ENST00000434472 EIF2AK4Q9P2K8 1649 aaKnown RBP14.19□□□□□ -0.14
CD44-210ENST00000434472 ST20-MTHFSA0A0A6YYL1 179 aa14.19□□□□□ -0.14
CD44-210ENST00000434472 PLA2R1Q13018 1463 aa14.18□□□□□ -0.14
CD44-210ENST00000434472 RTEL1-TNFRSF6BF6WH68 1400 aa14.18□□□□□ -0.14
CD44-210ENST00000434472 RALBP1Q15311 655 aa14.18□□□□□ -0.14
CD44-210ENST00000434472 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.17□□□□□ -0.14
CD44-210ENST00000434472 A2MP01023 1474 aa14.16□□□□□ -0.14
CD44-210ENST00000434472 PPP4R2Q9NY27 417 aa14.15□□□□□ -0.14
CD44-210ENST00000434472 SMG6Q86US8 1419 aaKnown RBP14.15□□□□□ -0.14
CD44-210ENST00000434472 BRD4O60885 1362 aaPredicted RBP14.15□□□□□ -0.14
CD44-210ENST00000434472 E9PCH4 1651 aa14.15□□□□□ -0.14
CD44-210ENST00000434472 DNAJC5Q9H3Z4 198 aa14.14□□□□□ -0.15
CD44-210ENST00000434472 MYBBP1AQ9BQG0 1328 aaKnown RBP14.13□□□□□ -0.15
CD44-210ENST00000434472 TMC1Q8TDI8 760 aa14.13□□□□□ -0.15
CD44-210ENST00000434472 STAC3Q96MF2 364 aa14.13□□□□□ -0.15
CD44-210ENST00000434472 PRDM15P57071 1507 aaPredicted RBP14.13□□□□□ -0.15
CD44-210ENST00000434472 SPAG9O60271 1321 aaKnown RBP14.13□□□□□ -0.15
CD44-210ENST00000434472 TRAPPC8Q9Y2L5 1435 aa14.12□□□□□ -0.15
CD44-210ENST00000434472 PNISRQ8TF01 805 aaKnown RBP14.12□□□□□ -0.15
CD44-210ENST00000434472 WASHC2CQ9Y4E1 1318 aa14.11□□□□□ -0.15
CD44-210ENST00000434472 RGL3Q3MIN7 710 aa14.11□□□□□ -0.15
CD44-210ENST00000434472 COL17A1Q9UMD9 1497 aaPredicted RBP14.1□□□□□ -0.15
CD44-210ENST00000434472 WDR7Q9Y4E6 1490 aa14.09□□□□□ -0.15
CD44-210ENST00000434472 NUDCQ9Y266 331 aa14.09□□□□□ -0.15
CD44-210ENST00000434472 LRPPRCP42704 1394 aaKnown RBP14.09□□□□□ -0.15
CD44-210ENST00000434472 ZFYVE16Q7Z3T8 1539 aa14.08□□□□□ -0.15
CD44-210ENST00000434472 TRPM2O94759 1503 aa14.07□□□□□ -0.16
CD44-210ENST00000434472 KANK1Q14678 1352 aa14.07□□□□□ -0.16
CD44-210ENST00000434472 IRX6P78412 446 aaPredicted RBP14.07□□□□□ -0.16
CD44-210ENST00000434472 TMF1P82094 1093 aa14.07□□□□□ -0.16
CD44-210ENST00000434472 NBPF1Q3BBV0 1214 aa14.07□□□□□ -0.16
CD44-210ENST00000434472 RNF17Q9BXT8 1623 aaKnown RBP14.07□□□□□ -0.16
CD44-210ENST00000434472 PARD3Q8TEW0 1356 aa14.06□□□□□ -0.16
CD44-210ENST00000434472 PTPRTO14522 1441 aa14.06□□□□□ -0.16
CD44-210ENST00000434472 DEPDC5O75140 1603 aa14.06□□□□□ -0.16
CD44-210ENST00000434472 ABCA9Q8IUA7 1624 aa14.06□□□□□ -0.16
CD44-210ENST00000434472 NLRP13Q86W25 1043 aa14.06□□□□□ -0.16
CD44-210ENST00000434472 RBM19Q9Y4C8 960 aaKnown RBP14.06□□□□□ -0.16
CD44-210ENST00000434472 INSRP06213 1382 aa14.05□□□□□ -0.16
CD44-210ENST00000434472 TESK2Q96S53 571 aa14.04□□□□□ -0.16
CD44-210ENST00000434472 INO80Q9ULG1 1556 aaPredicted RBP14.04□□□□□ -0.16
CD44-210ENST00000434472 TET3O43151 1660 aa14.04□□□□□ -0.16
CD44-210ENST00000434472 FANCAO15360 1455 aa14.04□□□□□ -0.16
CD44-210ENST00000434472 ATP7AQ04656 1500 aa14.04□□□□□ -0.16
CD44-210ENST00000434472 NEURL4Q96JN8 1562 aa14.04□□□□□ -0.16
CD44-210ENST00000434472 CNGB1Q14028 1251 aaPredicted RBP14.04□□□□□ -0.16
CD44-210ENST00000434472 RNF123Q5XPI4 1314 aa14.04□□□□□ -0.16
CD44-210ENST00000434472 ZMYM4Q5VZL5 1548 aa14.03□□□□□ -0.16
CD44-210ENST00000434472 VWDEQ8N2E2 1590 aa14.02□□□□□ -0.16
CD44-210ENST00000434472 CEP152O94986 1710 aa14.02□□□□□ -0.16
CD44-210ENST00000434472 SPHKAPQ2M3C7 1700 aa14.02□□□□□ -0.16
CD44-210ENST00000434472 SCAPERQ9BY12 1400 aa14.02□□□□□ -0.17
CD44-210ENST00000434472 MADDQ8WXG6 1647 aa14.02□□□□□ -0.17
CD44-210ENST00000434472 PER1O15534 1290 aaPredicted RBP14.01□□□□□ -0.17
CD44-210ENST00000434472 CDCA8Q53HL2 280 aa14.01□□□□□ -0.17
CD44-210ENST00000434472 AFAP1Q8N556 730 aa14.01□□□□□ -0.17
CD44-210ENST00000434472 DISP3Q9P2K9 1392 aa14.01□□□□□ -0.17
CD44-210ENST00000434472 ADGRL1O94910 1474 aa14□□□□□ -0.17
CD44-210ENST00000434472 PDE3BQ13370 1112 aa14□□□□□ -0.17
CD44-210ENST00000434472 SLC24A1O60721 1099 aa13.99□□□□□ -0.17
CD44-210ENST00000434472 IQGAP1P46940 1657 aa13.99□□□□□ -0.17
CD44-210ENST00000434472 SCAF11Q99590 1463 aaKnown RBP13.99□□□□□ -0.17
CD44-210ENST00000434472 CLTCL1P53675 1640 aa13.98□□□□□ -0.17
CD44-210ENST00000434472 KIAA1210Q9ULL0 1709 aa13.98□□□□□ -0.17
CD44-210ENST00000434472 PANK3Q9H999 370 aa13.97□□□□□ -0.17
CD44-210ENST00000434472 EIF3AQ14152 1382 aaKnown RBP13.97□□□□□ -0.17
CD44-210ENST00000434472 ANP32EQ9BTT0 268 aa13.97□□□□□ -0.17
CD44-210ENST00000434472 ASXL2Q76L83 1435 aa13.96□□□□□ -0.17
CD44-210ENST00000434472 FANCIQ9NVI1 1328 aa13.95□□□□□ -0.18
CD44-210ENST00000434472 KIF3BO15066 747 aa13.95□□□□□ -0.18
CD44-210ENST00000434472 MYT1LQ9UL68 1186 aa13.95□□□□□ -0.18
CD44-210ENST00000434472 CFAP74Q9C0B2 1584 aa13.94□□□□□ -0.18
CD44-210ENST00000434472 LMTK2Q8IWU2 1503 aa13.94□□□□□ -0.18
CD44-210ENST00000434472 MYOM2P54296 1465 aa13.94□□□□□ -0.18
CD44-210ENST00000434472 NPM1P06748 294 aaKnown RBP eCLIP13.93□□□□□ -0.18
CD44-210ENST00000434472 B4GALNT3Q6L9W6 998 aa13.93□□□□□ -0.18
CD44-210ENST00000434472 SYNMO15061 1565 aa13.93□□□□□ -0.18
CD44-210ENST00000434472 MROH1Q8NDA8 1641 aa13.93□□□□□ -0.18
CD44-210ENST00000434472 ZNF518AQ6AHZ1 1483 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms