RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 KDM5CP41229 1560 aa9.88□□□□□ -0.83
COL28A1-202ENST00000430711 CFDP1Q9UEE9 299 aaPredicted RBP9.88□□□□□ -0.83
COL28A1-202ENST00000430711 ADGBQ8N7X0 1667 aa9.87□□□□□ -0.83
COL28A1-202ENST00000430711 ZBED9Q6R2W3 1325 aa9.87□□□□□ -0.83
COL28A1-202ENST00000430711 TROQ12816 1431 aaPredicted RBP9.86□□□□□ -0.83
COL28A1-202ENST00000430711 DISP3Q9P2K9 1392 aa9.85□□□□□ -0.83
COL28A1-202ENST00000430711 KDM2AQ9Y2K7 1162 aa9.85□□□□□ -0.83
COL28A1-202ENST00000430711 KIAA1107Q9UPP5 1409 aa9.84□□□□□ -0.83
COL28A1-202ENST00000430711 DCAF8L1A6NGE4 600 aa9.84□□□□□ -0.83
COL28A1-202ENST00000430711 SLC4A2P04920 1241 aa9.84□□□□□ -0.83
COL28A1-202ENST00000430711 BCL11AQ9H165 835 aa9.84□□□□□ -0.83
COL28A1-202ENST00000430711 PPP4R2Q9NY27 417 aa9.84□□□□□ -0.83
COL28A1-202ENST00000430711 CDK11AQ9UQ88 783 aaPredicted RBP9.83□□□□□ -0.84
COL28A1-202ENST00000430711 TSPOAP1O95153 1857 aa9.83□□□□□ -0.84
COL28A1-202ENST00000430711 ADCY10Q96PN6 1610 aa9.82□□□□□ -0.84
COL28A1-202ENST00000430711 PAK3O75914 559 aaPredicted RBP9.82□□□□□ -0.84
COL28A1-202ENST00000430711 SPATA31D1Q6ZQQ2 1576 aa9.82□□□□□ -0.84
COL28A1-202ENST00000430711 ANKRD50Q9ULJ7 1429 aa9.82□□□□□ -0.84
COL28A1-202ENST00000430711 ITSN2Q9NZM3 1697 aa9.82□□□□□ -0.84
COL28A1-202ENST00000430711 ADGRL2O95490 1459 aa9.82□□□□□ -0.84
COL28A1-202ENST00000430711 HNRNPMP52272 730 aaKnown RBP eCLIP9.82□□□□□ -0.84
COL28A1-202ENST00000430711 SALL2Q9Y467 1007 aaPredicted RBP9.82□□□□□ -0.84
COL28A1-202ENST00000430711 ST20-MTHFSA0A0A6YYL1 179 aa9.81□□□□□ -0.84
COL28A1-202ENST00000430711 FANCIQ9NVI1 1328 aa9.81□□□□□ -0.84
COL28A1-202ENST00000430711 SKAP1Q86WV1 359 aa9.81□□□□□ -0.84
COL28A1-202ENST00000430711 NUP155O75694 1391 aa9.8□□□□□ -0.84
COL28A1-202ENST00000430711 NUP160Q12769 1436 aa9.8□□□□□ -0.84
COL28A1-202ENST00000430711 ABCA8O94911 1581 aa9.8□□□□□ -0.84
COL28A1-202ENST00000430711 PNISRQ8TF01 805 aaKnown RBP9.79□□□□□ -0.84
COL28A1-202ENST00000430711 ATP10BO94823 1461 aa9.79□□□□□ -0.84
COL28A1-202ENST00000430711 C9orf84Q5VXU9 1444 aa9.79□□□□□ -0.84
COL28A1-202ENST00000430711 SMG6Q86US8 1419 aaKnown RBP9.78□□□□□ -0.84
COL28A1-202ENST00000430711 NBPF1Q3BBV0 1214 aa9.78□□□□□ -0.84
COL28A1-202ENST00000430711 JPH4Q96JJ6 628 aa9.78□□□□□ -0.84
COL28A1-202ENST00000430711 PPRC1Q5VV67 1664 aaKnown RBP9.78□□□□□ -0.84
COL28A1-202ENST00000430711 RALGAPBQ86X10 1494 aa9.78□□□□□ -0.84
COL28A1-202ENST00000430711 DCAF11Q8TEB1 546 aa9.78□□□□□ -0.84
COL28A1-202ENST00000430711 CARD11Q9BXL7 1154 aa9.78□□□□□ -0.84
COL28A1-202ENST00000430711 E9PCH4 1651 aa9.77□□□□□ -0.85
COL28A1-202ENST00000430711 NUDCQ9Y266 331 aa9.77□□□□□ -0.85
COL28A1-202ENST00000430711 ANKRD30AQ9BXX3 1397 aa9.76□□□□□ -0.85
COL28A1-202ENST00000430711 SAMD9LQ8IVG5 1584 aa9.76□□□□□ -0.85
COL28A1-202ENST00000430711 UHRF1BP1Q6BDS2 1440 aa9.76□□□□□ -0.85
COL28A1-202ENST00000430711 KDM5DQ9BY66 1539 aa9.76□□□□□ -0.85
COL28A1-202ENST00000430711 CDC42BPBQ9Y5S2 1711 aa9.76□□□□□ -0.85
COL28A1-202ENST00000430711 KIF15Q9NS87 1388 aa9.75□□□□□ -0.85
COL28A1-202ENST00000430711 RNF123Q5XPI4 1314 aa9.75□□□□□ -0.85
COL28A1-202ENST00000430711 RGL3Q3MIN7 710 aa9.75□□□□□ -0.85
COL28A1-202ENST00000430711 PCDH10Q9P2E7 1040 aa9.75□□□□□ -0.85
COL28A1-202ENST00000430711 PLA2R1Q13018 1463 aa9.75□□□□□ -0.85
COL28A1-202ENST00000430711 CDCA7LQ96GN5 454 aa9.74□□□□□ -0.85
COL28A1-202ENST00000430711 GLI2P10070 1586 aa9.74□□□□□ -0.85
COL28A1-202ENST00000430711 NPM1P06748 294 aaKnown RBP eCLIP9.74□□□□□ -0.85
COL28A1-202ENST00000430711 FOXD4L1Q9NU39 408 aa9.74□□□□□ -0.85
COL28A1-202ENST00000430711 TMC1Q8TDI8 760 aa9.73□□□□□ -0.85
COL28A1-202ENST00000430711 LRPPRCP42704 1394 aaKnown RBP9.73□□□□□ -0.85
COL28A1-202ENST00000430711 FAM135AQ9P2D6 1515 aa9.72□□□□□ -0.85
COL28A1-202ENST00000430711 TRPM1Q7Z4N2 1603 aa9.72□□□□□ -0.85
COL28A1-202ENST00000430711 EXOC6Q8TAG9 804 aa9.72□□□□□ -0.85
COL28A1-202ENST00000430711 TTC37Q6PGP7 1564 aa9.72□□□□□ -0.85
COL28A1-202ENST00000430711 PTPRGP23470 1445 aa9.72□□□□□ -0.85
COL28A1-202ENST00000430711 NBR1Q14596 966 aa9.72□□□□□ -0.85
COL28A1-202ENST00000430711 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.72□□□□□ -0.85
COL28A1-202ENST00000430711 SYCP2Q9BX26 1530 aa9.71□□□□□ -0.85
COL28A1-202ENST00000430711 ROCK2O75116 1388 aaKnown RBP9.71□□□□□ -0.86
COL28A1-202ENST00000430711 PLEKHD1A6NEE1 506 aa9.71□□□□□ -0.86
COL28A1-202ENST00000430711 PLIN1O60240 522 aa9.71□□□□□ -0.86
COL28A1-202ENST00000430711 ERICH6BQ5W0A0 696 aa9.71□□□□□ -0.86
COL28A1-202ENST00000430711 CCDC136Q96JN2 1154 aa9.71□□□□□ -0.86
COL28A1-202ENST00000430711 A2MP01023 1474 aa9.7□□□□□ -0.86
COL28A1-202ENST00000430711 ARHGEF12Q9NZN5 1544 aa9.7□□□□□ -0.86
COL28A1-202ENST00000430711 CC2D1BQ5T0F9 858 aaKnown RBP9.7□□□□□ -0.86
COL28A1-202ENST00000430711 MYO5CQ9NQX4 1742 aa9.7□□□□□ -0.86
COL28A1-202ENST00000430711 SHANK2Q9UPX8 1470 aa9.7□□□□□ -0.86
COL28A1-202ENST00000430711 PRAG1Q86YV5 1406 aa9.7□□□□□ -0.86
COL28A1-202ENST00000430711 PER1O15534 1290 aaPredicted RBP9.68□□□□□ -0.86
COL28A1-202ENST00000430711 PREX2Q70Z35 1606 aa9.68□□□□□ -0.86
COL28A1-202ENST00000430711 CARMIL2Q6F5E8 1435 aa9.68□□□□□ -0.86
COL28A1-202ENST00000430711 ERICH6Q7L0X2 663 aa9.68□□□□□ -0.86
COL28A1-202ENST00000430711 MYBBP1AQ9BQG0 1328 aaKnown RBP9.68□□□□□ -0.86
COL28A1-202ENST00000430711 PLEKHH2Q8IVE3 1493 aa9.67□□□□□ -0.86
COL28A1-202ENST00000430711 COL17A1Q9UMD9 1497 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-202ENST00000430711 TESK2Q96S53 571 aa9.67□□□□□ -0.86
COL28A1-202ENST00000430711 RRP1P56182 461 aaKnown RBP9.67□□□□□ -0.86
COL28A1-202ENST00000430711 PARD3Q8TEW0 1356 aa9.67□□□□□ -0.86
COL28A1-202ENST00000430711 ARHGEF5Q12774 1597 aa9.66□□□□□ -0.86
COL28A1-202ENST00000430711 TSPY4P0CV99 314 aa9.66□□□□□ -0.86
COL28A1-202ENST00000430711 TSPY10P0CW01 314 aa9.66□□□□□ -0.86
COL28A1-202ENST00000430711 C20orf194Q5TEA3 1177 aa9.66□□□□□ -0.86
COL28A1-202ENST00000430711 LHX8Q68G74 356 aa9.66□□□□□ -0.86
COL28A1-202ENST00000430711 CERKQ8TCT0 537 aa9.66□□□□□ -0.86
COL28A1-202ENST00000430711 CCDC141Q6ZP82 1450 aa9.66□□□□□ -0.86
COL28A1-202ENST00000430711 NOP58Q9Y2X3 529 aaKnown RBP9.66□□□□□ -0.86
COL28A1-202ENST00000430711 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.65□□□□□ -0.86
COL28A1-202ENST00000430711 BRD4O60885 1362 aaPredicted RBP9.65□□□□□ -0.87
COL28A1-202ENST00000430711 NPM2Q86SE8 214 aaKnown RBP9.65□□□□□ -0.87
COL28A1-202ENST00000430711 DEKP35659 375 aaKnown RBP9.64□□□□□ -0.87
COL28A1-202ENST00000430711 CCDC144AA2RUR9 1427 aa9.64□□□□□ -0.87
COL28A1-202ENST00000430711 PANK3Q9H999 370 aa9.64□□□□□ -0.87
COL28A1-202ENST00000430711 PRDM15P57071 1507 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms