RNA–Protein interactions for RNA: ENST00000427506.5

GPC1-205, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-205ENST00000427506 FAM135AQ9P2D6 1515 aa28.54■■■□□ 2.16
GPC1-205ENST00000427506 SHANK2Q9UPX8 1470 aa28.54■■■□□ 2.16
GPC1-205ENST00000427506 RRP7BPQ9NSQ0 103 aa28.54■■■□□ 2.16
GPC1-205ENST00000427506 DUOX2Q9NRD8 1548 aa28.53■■■□□ 2.16
GPC1-205ENST00000427506 KIF15Q9NS87 1388 aa28.52■■■□□ 2.16
GPC1-205ENST00000427506 CROCC2H7BZ55 1655 aa28.52■■■□□ 2.16
GPC1-205ENST00000427506 STRCQ7RTU9 1775 aa28.52■■■□□ 2.16
GPC1-205ENST00000427506 DNMT1P26358 1616 aaKnown RBP28.51■■■□□ 2.15
GPC1-205ENST00000427506 FAM50AQ14320 339 aaKnown RBP28.51■■■□□ 2.15
GPC1-205ENST00000427506 FBXO31Q5XUX0 539 aaPredicted RBP28.5■■■□□ 2.15
GPC1-205ENST00000427506 CHIC2Q9UKJ5 165 aa28.5■■■□□ 2.15
GPC1-205ENST00000427506 MYO3AQ8NEV4 1616 aa28.5■■■□□ 2.15
GPC1-205ENST00000427506 EIF2AK4Q9P2K8 1649 aaKnown RBP28.5■■■□□ 2.15
GPC1-205ENST00000427506 RNF17Q9BXT8 1623 aaKnown RBP28.48■■■□□ 2.15
GPC1-205ENST00000427506 PZPP20742 1482 aa28.47■■■□□ 2.15
GPC1-205ENST00000427506 CAMSAP1Q5T5Y3 1602 aa28.47■■■□□ 2.15
GPC1-205ENST00000427506 NCOA1Q15788 1441 aa28.46■■■□□ 2.15
GPC1-205ENST00000427506 TNRQ92752 1358 aa28.46■■■□□ 2.15
GPC1-205ENST00000427506 CEP170BQ9Y4F5 1589 aaPredicted RBP28.45■■■□□ 2.15
GPC1-205ENST00000427506 ANKRD30AQ9BXX3 1397 aa28.45■■■□□ 2.14
GPC1-205ENST00000427506 FBXO41Q8TF61 875 aa28.44■■■□□ 2.14
GPC1-205ENST00000427506 ERBINQ96RT1 1412 aa28.43■■■□□ 2.14
GPC1-205ENST00000427506 ZNF142P52746 1687 aaPredicted RBP28.43■■■□□ 2.14
GPC1-205ENST00000427506 PTPRTO14522 1441 aa28.43■■■□□ 2.14
GPC1-205ENST00000427506 ABCC3O15438 1527 aa28.42■■■□□ 2.14
GPC1-205ENST00000427506 A2ML1A8K2U0 1454 aa28.4■■■□□ 2.14
GPC1-205ENST00000427506 ZC3H13Q5T200 1668 aaKnown RBP28.4■■■□□ 2.14
GPC1-205ENST00000427506 PPARGC1BQ86YN6 1023 aaKnown RBP28.4■■■□□ 2.14
GPC1-205ENST00000427506 NCKAP5LQ9HCH0 1330 aa28.4■■■□□ 2.14
GPC1-205ENST00000427506 CERKQ8TCT0 537 aa28.39■■■□□ 2.14
GPC1-205ENST00000427506 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.39■■■□□ 2.14
GPC1-205ENST00000427506 MROH1Q8NDA8 1641 aa28.38■■■□□ 2.13
GPC1-205ENST00000427506 PLA2R1Q13018 1463 aa28.35■■■□□ 2.13
GPC1-205ENST00000427506 PKD2Q13563 968 aa28.35■■■□□ 2.13
GPC1-205ENST00000427506 KANK1Q14678 1352 aa28.33■■■□□ 2.13
GPC1-205ENST00000427506 CEP152O94986 1710 aa28.32■■■□□ 2.12
GPC1-205ENST00000427506 PRDM15P57071 1507 aaPredicted RBP28.32■■■□□ 2.12
GPC1-205ENST00000427506 ADGRL2O95490 1459 aa28.31■■■□□ 2.12
GPC1-205ENST00000427506 NLRP1Q9C000 1473 aa28.31■■■□□ 2.12
GPC1-205ENST00000427506 THEMISQ8N1K5 641 aaPredicted RBP28.28■■■□□ 2.12
GPC1-205ENST00000427506 ERVK-7P63135 1459 aa28.27■■■□□ 2.12
GPC1-205ENST00000427506 SPATA31D1Q6ZQQ2 1576 aa28.27■■■□□ 2.12
GPC1-205ENST00000427506 DEPDC5O75140 1603 aa28.25■■■□□ 2.11
GPC1-205ENST00000427506 UGGT1Q9NYU2 1555 aa28.24■■■□□ 2.11
GPC1-205ENST00000427506 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.24■■■□□ 2.11
GPC1-205ENST00000427506 ARHGAP31Q2M1Z3 1444 aa28.23■■■□□ 2.11
GPC1-205ENST00000427506 ITGAEP38570 1179 aa28.22■■■□□ 2.11
GPC1-205ENST00000427506 ANKRD50Q9ULJ7 1429 aa28.22■■■□□ 2.11
GPC1-205ENST00000427506 ANKLE2Q86XL3 938 aa28.21■■■□□ 2.11
GPC1-205ENST00000427506 CFAP65Q6ZU64 1925 aaKnown RBP28.19■■■□□ 2.1
GPC1-205ENST00000427506 ZNF335Q9H4Z2 1342 aaPredicted RBP28.18■■■□□ 2.1
GPC1-205ENST00000427506 LTBP4Q8N2S1 1624 aa28.17■■■□□ 2.1
GPC1-205ENST00000427506 LMTK2Q8IWU2 1503 aa28.16■■■□□ 2.1
GPC1-205ENST00000427506 VWDEQ8N2E2 1590 aa28.15■■■□□ 2.1
GPC1-205ENST00000427506 POLR1AO95602 1720 aaPredicted RBP28.15■■■□□ 2.1
GPC1-205ENST00000427506 ROCK1Q13464 1354 aa28.13■■■□□ 2.09
GPC1-205ENST00000427506 NEURL4Q96JN8 1562 aa28.11■■■□□ 2.09
GPC1-205ENST00000427506 STAG3Q9UJ98 1225 aa28.09■■■□□ 2.09
GPC1-205ENST00000427506 EFCAB6Q5THR3 1501 aa28.08■■■□□ 2.08
GPC1-205ENST00000427506 NPHP4O75161 1426 aaPredicted RBP28.07■■■□□ 2.08
GPC1-205ENST00000427506 UBR1Q8IWV7 1749 aa28.06■■■□□ 2.08
GPC1-205ENST00000427506 MED14O60244 1454 aa28.04■■■□□ 2.08
GPC1-205ENST00000427506 IQSEC2Q5JU85 1478 aa28.04■■■□□ 2.08
GPC1-205ENST00000427506 IDI1Q13907 227 aa28.03■■■□□ 2.08
GPC1-205ENST00000427506 RRBP1Q9P2E9 1410 aaKnown RBP28.01■■■□□ 2.08
GPC1-205ENST00000427506 PIK3C2BO00750 1634 aa28.01■■■□□ 2.07
GPC1-205ENST00000427506 UNC13BO14795 1591 aa28.01■■■□□ 2.07
GPC1-205ENST00000427506 TXNDC2Q86VQ3 553 aa28■■■□□ 2.07
GPC1-205ENST00000427506 EID1Q9Y6B2 187 aa28■■■□□ 2.07
GPC1-205ENST00000427506 NOS1P29475 1434 aa28■■■□□ 2.07
GPC1-205ENST00000427506 RPRD2Q5VT52 1461 aaKnown RBP27.99■■■□□ 2.07
GPC1-205ENST00000427506 SYNMO15061 1565 aa27.99■■■□□ 2.07
GPC1-205ENST00000427506 TET3O43151 1660 aa27.98■■■□□ 2.07
GPC1-205ENST00000427506 IQGAP1P46940 1657 aa27.98■■■□□ 2.07
GPC1-205ENST00000427506 SCAF11Q99590 1463 aaKnown RBP27.98■■■□□ 2.07
GPC1-205ENST00000427506 SLC52A1Q9NWF4 448 aa27.97■■■□□ 2.07
GPC1-205ENST00000427506 LTKP29376 864 aa27.96■■■□□ 2.07
GPC1-205ENST00000427506 SLIT1O75093 1534 aa27.96■■■□□ 2.07
GPC1-205ENST00000427506 NUP155O75694 1391 aa27.96■■■□□ 2.07
GPC1-205ENST00000427506 ARHGAP23Q9P227 1491 aa27.95■■■□□ 2.07
GPC1-205ENST00000427506 TMEM2Q9UHN6 1383 aa27.94■■■□□ 2.06
GPC1-205ENST00000427506 CPS1P31327 1500 aa27.93■■■□□ 2.06
GPC1-205ENST00000427506 GCC2Q8IWJ2 1684 aa27.93■■■□□ 2.06
GPC1-205ENST00000427506 UBAP1LF5GYI3 381 aa27.92■■■□□ 2.06
GPC1-205ENST00000427506 IQGAP3Q86VI3 1631 aa27.9■■■□□ 2.06
GPC1-205ENST00000427506 KDM5AP29375 1690 aaKnown RBP27.9■■■□□ 2.06
GPC1-205ENST00000427506 ADGRB3O60242 1522 aa27.88■■■□□ 2.05
GPC1-205ENST00000427506 E9PCH4 1651 aa27.86■■■□□ 2.05
GPC1-205ENST00000427506 CHGAP10645 457 aaKnown RBP27.85■■■□□ 2.05
GPC1-205ENST00000427506 BCANQ96GW7 911 aa27.82■■■□□ 2.04
GPC1-205ENST00000427506 NAIPQ13075 1403 aa27.82■■■□□ 2.04
GPC1-205ENST00000427506 HDGFP51858 240 aaKnown RBP27.79■■■□□ 2.04
GPC1-205ENST00000427506 SCAF1Q9H7N4 1312 aaKnown RBP27.78■■■□□ 2.04
GPC1-205ENST00000427506 TOM1O60784 492 aa27.78■■■□□ 2.04
GPC1-205ENST00000427506 PPP1R15AO75807 674 aaPredicted RBP27.78■■■□□ 2.04
GPC1-205ENST00000427506 SLC26A8Q96RN1 970 aa27.76■■■□□ 2.03
GPC1-205ENST00000427506 PIP4K2BP78356 416 aa27.75■■■□□ 2.03
GPC1-205ENST00000427506 TRIM52Q96A61 297 aa27.75■■■□□ 2.03
GPC1-205ENST00000427506 SENP3Q9H4L4 574 aaPredicted RBP27.75■■■□□ 2.03
GPC1-205ENST00000427506 STRCP1A6NGW2 1772 aa27.75■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms