RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ABCC5O15440 1437 aa13.09□□□□□ -0.31
USP54-205ENST00000424265 SHANK2Q9UPX8 1470 aa13.09□□□□□ -0.31
USP54-205ENST00000424265 BCL11BQ9C0K0 894 aaPredicted RBP13.09□□□□□ -0.31
USP54-205ENST00000424265 MLECQ14165 292 aa13.09□□□□□ -0.31
USP54-205ENST00000424265 ZNF518AQ6AHZ1 1483 aa13.08□□□□□ -0.31
USP54-205ENST00000424265 PPP6R1Q9UPN7 881 aa13.08□□□□□ -0.32
USP54-205ENST00000424265 NEO1Q92859 1461 aa13.08□□□□□ -0.32
USP54-205ENST00000424265 EIF4G2P78344 907 aaKnown RBP eCLIP13.07□□□□□ -0.32
USP54-205ENST00000424265 CCDC144AA2RUR9 1427 aa13.07□□□□□ -0.32
USP54-205ENST00000424265 CDCA8Q53HL2 280 aa13.07□□□□□ -0.32
USP54-205ENST00000424265 TAF7LQ5H9L4 462 aa13.07□□□□□ -0.32
USP54-205ENST00000424265 HSP90AA1P07900 732 aaKnown RBP13.06□□□□□ -0.32
USP54-205ENST00000424265 KDM2AQ9Y2K7 1162 aa13.06□□□□□ -0.32
USP54-205ENST00000424265 DHX57Q6P158 1386 aaKnown RBP13.06□□□□□ -0.32
USP54-205ENST00000424265 ABCC10Q5T3U5 1492 aa13.06□□□□□ -0.32
USP54-205ENST00000424265 RTEL1-TNFRSF6BF6WH68 1400 aa13.05□□□□□ -0.32
USP54-205ENST00000424265 PLPPR3Q6T4P5 718 aa13.05□□□□□ -0.32
USP54-205ENST00000424265 RGL3Q3MIN7 710 aa13.05□□□□□ -0.32
USP54-205ENST00000424265 NAP1L5Q96NT1 182 aaPredicted RBP13.05□□□□□ -0.32
USP54-205ENST00000424265 ZCCHC11Q5TAX3 1644 aaKnown RBP13.04□□□□□ -0.32
USP54-205ENST00000424265 KLHL34Q8N239 644 aa13.03□□□□□ -0.32
USP54-205ENST00000424265 NCOA1Q15788 1441 aa13.03□□□□□ -0.32
USP54-205ENST00000424265 ARAP3Q8WWN8 1544 aa13.03□□□□□ -0.32
USP54-205ENST00000424265 NAIPQ13075 1403 aa13.03□□□□□ -0.32
USP54-205ENST00000424265 NCBP3Q53F19 620 aaKnown RBP13.02□□□□□ -0.33
USP54-205ENST00000424265 DUOX2Q9NRD8 1548 aa13.01□□□□□ -0.33
USP54-205ENST00000424265 ERBINQ96RT1 1412 aa13.01□□□□□ -0.33
USP54-205ENST00000424265 ANP32CO43423 234 aa13.01□□□□□ -0.33
USP54-205ENST00000424265 MAPKBP1O60336 1514 aa13.01□□□□□ -0.33
USP54-205ENST00000424265 ERCC6L2Q5T890 1561 aa13.01□□□□□ -0.33
USP54-205ENST00000424265 MYO5CQ9NQX4 1742 aa13□□□□□ -0.33
USP54-205ENST00000424265 SIN3AQ96ST3 1273 aa13□□□□□ -0.33
USP54-205ENST00000424265 DHX29Q7Z478 1369 aaKnown RBP13□□□□□ -0.33
USP54-205ENST00000424265 ADCY10Q96PN6 1610 aa13□□□□□ -0.33
USP54-205ENST00000424265 SYCP2Q9BX26 1530 aa13□□□□□ -0.33
USP54-205ENST00000424265 RAPGEF3O95398 923 aa12.99□□□□□ -0.33
USP54-205ENST00000424265 DCAF11Q8TEB1 546 aa12.99□□□□□ -0.33
USP54-205ENST00000424265 ARHGEF5Q12774 1597 aa12.99□□□□□ -0.33
USP54-205ENST00000424265 CARD11Q9BXL7 1154 aa12.99□□□□□ -0.33
USP54-205ENST00000424265 DNMT1P26358 1616 aaKnown RBP12.98□□□□□ -0.33
USP54-205ENST00000424265 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.98□□□□□ -0.33
USP54-205ENST00000424265 EID1Q9Y6B2 187 aa12.98□□□□□ -0.33
USP54-205ENST00000424265 AAMPQ13685 434 aa12.98□□□□□ -0.33
USP54-205ENST00000424265 ADGRL2O95490 1459 aa12.96□□□□□ -0.33
USP54-205ENST00000424265 EIF3AQ14152 1382 aaKnown RBP12.96□□□□□ -0.33
USP54-205ENST00000424265 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.96□□□□□ -0.33
USP54-205ENST00000424265 DNAJC5Q9H3Z4 198 aa12.96□□□□□ -0.34
USP54-205ENST00000424265 MAGI3Q5TCQ9 1506 aa12.96□□□□□ -0.34
USP54-205ENST00000424265 ARXQ96QS3 562 aa12.96□□□□□ -0.34
USP54-205ENST00000424265 VGFO15240 615 aaPredicted RBP12.95□□□□□ -0.34
USP54-205ENST00000424265 RIMBP3CA6NJZ7 1639 aa12.95□□□□□ -0.34
USP54-205ENST00000424265 RIMBP3BA6NNM3 1639 aa12.95□□□□□ -0.34
USP54-205ENST00000424265 RIMBP3Q9UFD9 1639 aa12.95□□□□□ -0.34
USP54-205ENST00000424265 PREX2Q70Z35 1606 aa12.94□□□□□ -0.34
USP54-205ENST00000424265 SLC52A1Q9NWF4 448 aa12.94□□□□□ -0.34
USP54-205ENST00000424265 A2MP01023 1474 aa12.94□□□□□ -0.34
USP54-205ENST00000424265 PPM1GO15355 546 aaPredicted RBP12.93□□□□□ -0.34
USP54-205ENST00000424265 BRPF3Q9ULD4 1205 aa12.93□□□□□ -0.34
USP54-205ENST00000424265 FOXD1Q16676 465 aa12.92□□□□□ -0.34
USP54-205ENST00000424265 NCLP19338 710 aaKnown RBP12.92□□□□□ -0.34
USP54-205ENST00000424265 USP35Q9P2H5 1018 aa12.92□□□□□ -0.34
USP54-205ENST00000424265 TRAPPC8Q9Y2L5 1435 aa12.91□□□□□ -0.34
USP54-205ENST00000424265 RRP9O43818 475 aaKnown RBP12.91□□□□□ -0.34
USP54-205ENST00000424265 MAGI2Q86UL8 1455 aa12.91□□□□□ -0.34
USP54-205ENST00000424265 LAS1LQ9Y4W2 734 aaKnown RBP12.9□□□□□ -0.34
USP54-205ENST00000424265 ATP7AQ04656 1500 aa12.9□□□□□ -0.34
USP54-205ENST00000424265 NPM2Q86SE8 214 aaKnown RBP12.9□□□□□ -0.34
USP54-205ENST00000424265 L3MBTL2Q969R5 705 aa12.9□□□□□ -0.34
USP54-205ENST00000424265 POGKQ9P215 609 aa12.9□□□□□ -0.34
USP54-205ENST00000424265 RPGRIP1LQ68CZ1 1315 aa12.9□□□□□ -0.35
USP54-205ENST00000424265 ROCK2O75116 1388 aaKnown RBP12.89□□□□□ -0.35
USP54-205ENST00000424265 CNGB1Q14028 1251 aaPredicted RBP12.89□□□□□ -0.35
USP54-205ENST00000424265 TMF1P82094 1093 aa12.88□□□□□ -0.35
USP54-205ENST00000424265 TTC37Q6PGP7 1564 aa12.88□□□□□ -0.35
USP54-205ENST00000424265 ABCA9Q8IUA7 1624 aa12.88□□□□□ -0.35
USP54-205ENST00000424265 ABCC1P33527 1531 aa12.88□□□□□ -0.35
USP54-205ENST00000424265 IPO9Q96P70 1041 aaKnown RBP12.88□□□□□ -0.35
USP54-205ENST00000424265 FAM43AQ8N2R8 423 aa12.88□□□□□ -0.35
USP54-205ENST00000424265 ADGBQ8N7X0 1667 aa12.88□□□□□ -0.35
USP54-205ENST00000424265 PAXIP1Q6ZW49 1069 aaPredicted RBP12.87□□□□□ -0.35
USP54-205ENST00000424265 ATP10AO60312 1499 aa12.87□□□□□ -0.35
USP54-205ENST00000424265 IRX6P78412 446 aaPredicted RBP12.86□□□□□ -0.35
USP54-205ENST00000424265 CNTLNQ9NXG0 1405 aa12.86□□□□□ -0.35
USP54-205ENST00000424265 AEBP2Q6ZN18 517 aaPredicted RBP12.85□□□□□ -0.35
USP54-205ENST00000424265 MLH3Q9UHC1 1453 aa12.85□□□□□ -0.35
USP54-205ENST00000424265 CANXP27824 592 aaKnown RBP12.85□□□□□ -0.35
USP54-205ENST00000424265 ANKRD30BQ9BXX2 1392 aa12.84□□□□□ -0.35
USP54-205ENST00000424265 SAMD9LQ8IVG5 1584 aa12.84□□□□□ -0.35
USP54-205ENST00000424265 MBD5Q9P267 1494 aa12.84□□□□□ -0.35
USP54-205ENST00000424265 PTPRKQ15262 1439 aa12.84□□□□□ -0.35
USP54-205ENST00000424265 GLI2P10070 1586 aa12.84□□□□□ -0.35
USP54-205ENST00000424265 ZFYVE16Q7Z3T8 1539 aa12.84□□□□□ -0.35
USP54-205ENST00000424265 PAK3O75914 559 aaPredicted RBP12.84□□□□□ -0.35
USP54-205ENST00000424265 C14orf37Q86TY3 774 aa12.84□□□□□ -0.35
USP54-205ENST00000424265 GSE1Q14687 1217 aa12.83□□□□□ -0.36
USP54-205ENST00000424265 THEMISQ8N1K5 641 aaPredicted RBP12.82□□□□□ -0.36
USP54-205ENST00000424265 PNNQ9H307 717 aaKnown RBP12.82□□□□□ -0.36
USP54-205ENST00000424265 C11orf95C9JLR9 678 aaPredicted RBP12.82□□□□□ -0.36
USP54-205ENST00000424265 MAST1Q9Y2H9 1570 aa12.81□□□□□ -0.36
USP54-205ENST00000424265 TNNT2P45379 298 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms