RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 ZNF330Q9Y3S2 320 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-206ENST00000421141 RALBP1Q15311 655 aa13.82□□□□□ -0.2
PTCH1-206ENST00000421141 ITSN2Q9NZM3 1697 aa13.81□□□□□ -0.2
PTCH1-206ENST00000421141 TROQ12816 1431 aaPredicted RBP13.81□□□□□ -0.2
PTCH1-206ENST00000421141 L3MBTL2Q969R5 705 aa13.81□□□□□ -0.2
PTCH1-206ENST00000421141 ANKRD50Q9ULJ7 1429 aa13.81□□□□□ -0.2
PTCH1-206ENST00000421141 AFAP1Q8N556 730 aa13.8□□□□□ -0.2
PTCH1-206ENST00000421141 THEMISQ8N1K5 641 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-206ENST00000421141 COG3Q96JB2 828 aa13.8□□□□□ -0.2
PTCH1-206ENST00000421141 C9orf84Q5VXU9 1444 aa13.8□□□□□ -0.2
PTCH1-206ENST00000421141 DHX57Q6P158 1386 aaKnown RBP13.8□□□□□ -0.2
PTCH1-206ENST00000421141 LTV1Q96GA3 475 aaPredicted RBP13.79□□□□□ -0.2
PTCH1-206ENST00000421141 ZNF644Q9H582 1327 aaPredicted RBP13.79□□□□□ -0.2
PTCH1-206ENST00000421141 CD109Q6YHK3 1445 aa13.79□□□□□ -0.2
PTCH1-206ENST00000421141 TIAM1Q13009 1591 aa13.78□□□□□ -0.2
PTCH1-206ENST00000421141 CGNL1Q0VF96 1302 aa13.78□□□□□ -0.2
PTCH1-206ENST00000421141 STAC3Q96MF2 364 aa13.78□□□□□ -0.2
PTCH1-206ENST00000421141 SENP3-EIF4A1A0A087X0R7 540 aa13.78□□□□□ -0.2
PTCH1-206ENST00000421141 PRXQ9BXM0 1461 aa13.77□□□□□ -0.2
PTCH1-206ENST00000421141 LMOD3Q0VAK6 560 aa13.77□□□□□ -0.2
PTCH1-206ENST00000421141 SCAPERQ9BY12 1400 aa13.77□□□□□ -0.2
PTCH1-206ENST00000421141 EPRSP07814 1512 aaKnown RBP13.77□□□□□ -0.2
PTCH1-206ENST00000421141 MINK1Q8N4C8 1332 aaPredicted RBP13.77□□□□□ -0.21
PTCH1-206ENST00000421141 PCF11O94913 1555 aaKnown RBP13.76□□□□□ -0.21
PTCH1-206ENST00000421141 C1orf141Q5JVX7 400 aa13.76□□□□□ -0.21
PTCH1-206ENST00000421141 IPO8O15397 1037 aaKnown RBP13.76□□□□□ -0.21
PTCH1-206ENST00000421141 MIA2Q96PC5 1412 aa13.75□□□□□ -0.21
PTCH1-206ENST00000421141 CDK13Q14004 1512 aaKnown RBP13.75□□□□□ -0.21
PTCH1-206ENST00000421141 ZNF608Q9ULD9 1512 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-206ENST00000421141 IRX6P78412 446 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-206ENST00000421141 TXNDC2Q86VQ3 553 aa13.74□□□□□ -0.21
PTCH1-206ENST00000421141 RAPGEF6Q8TEU7 1601 aa13.74□□□□□ -0.21
PTCH1-206ENST00000421141 EIF4G3O43432 1585 aaKnown RBP13.74□□□□□ -0.21
PTCH1-206ENST00000421141 PHF23Q9BUL5 403 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-206ENST00000421141 ARAP1Q96P48 1450 aa13.74□□□□□ -0.21
PTCH1-206ENST00000421141 STK31Q9BXU1 1019 aa13.74□□□□□ -0.21
PTCH1-206ENST00000421141 RAPGEF3O95398 923 aa13.73□□□□□ -0.21
PTCH1-206ENST00000421141 TSPOAP1O95153 1857 aa13.73□□□□□ -0.21
PTCH1-206ENST00000421141 G3V3G9 751 aa13.72□□□□□ -0.21
PTCH1-206ENST00000421141 BECN1Q14457 450 aa13.72□□□□□ -0.21
PTCH1-206ENST00000421141 DCAF8Q5TAQ9 597 aa13.72□□□□□ -0.21
PTCH1-206ENST00000421141 HDAC5Q9UQL6 1122 aa13.72□□□□□ -0.21
PTCH1-206ENST00000421141 CDK11BP21127 795 aaKnown RBP13.72□□□□□ -0.21
PTCH1-206ENST00000421141 PTPN23Q9H3S7 1636 aa13.72□□□□□ -0.21
PTCH1-206ENST00000421141 KCNJ4P48050 445 aa13.72□□□□□ -0.21
PTCH1-206ENST00000421141 ANKLE2Q86XL3 938 aa13.71□□□□□ -0.21
PTCH1-206ENST00000421141 ARHGEF11O15085 1522 aa13.71□□□□□ -0.21
PTCH1-206ENST00000421141 ADGRL1O94910 1474 aa13.7□□□□□ -0.22
PTCH1-206ENST00000421141 GTF2E1P29083 439 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-206ENST00000421141 TAF7LQ5H9L4 462 aa13.7□□□□□ -0.22
PTCH1-206ENST00000421141 TEX14Q8IWB6 1497 aa13.7□□□□□ -0.22
PTCH1-206ENST00000421141 FGD1P98174 961 aa13.7□□□□□ -0.22
PTCH1-206ENST00000421141 GPRASP1Q5JY77 1395 aa13.7□□□□□ -0.22
PTCH1-206ENST00000421141 PHLDB1Q86UU1 1377 aa13.69□□□□□ -0.22
PTCH1-206ENST00000421141 USP47Q96K76 1375 aa13.69□□□□□ -0.22
PTCH1-206ENST00000421141 SLC52A1Q9NWF4 448 aa13.69□□□□□ -0.22
PTCH1-206ENST00000421141 ST20-MTHFSA0A0A6YYL1 179 aa13.68□□□□□ -0.22
PTCH1-206ENST00000421141 PROSER2Q86WR7 435 aaPredicted RBP13.68□□□□□ -0.22
PTCH1-206ENST00000421141 PLB1Q6P1J6 1458 aa13.68□□□□□ -0.22
PTCH1-206ENST00000421141 CCDC141Q6ZP82 1450 aa13.67□□□□□ -0.22
PTCH1-206ENST00000421141 CHMP3Q9Y3E7 222 aa13.67□□□□□ -0.22
PTCH1-206ENST00000421141 NCLP19338 710 aaKnown RBP13.67□□□□□ -0.22
PTCH1-206ENST00000421141 MSH5O43196 834 aa13.66□□□□□ -0.22
PTCH1-206ENST00000421141 WDR62O43379 1518 aa13.66□□□□□ -0.22
PTCH1-206ENST00000421141 CENPJQ9HC77 1338 aaPredicted RBP13.65□□□□□ -0.22
PTCH1-206ENST00000421141 CCER2I3L3R5 266 aa13.65□□□□□ -0.22
PTCH1-206ENST00000421141 SYTL4Q96C24 671 aaPredicted RBP13.65□□□□□ -0.22
PTCH1-206ENST00000421141 CFAP44Q96MT7 982 aa13.65□□□□□ -0.23
PTCH1-206ENST00000421141 TTC5Q8N0Z6 440 aa13.64□□□□□ -0.23
PTCH1-206ENST00000421141 WDR97A6NE52 1622 aa13.64□□□□□ -0.23
PTCH1-206ENST00000421141 SUPT16HQ9Y5B9 1047 aaKnown RBP13.64□□□□□ -0.23
PTCH1-206ENST00000421141 ADAMTS12P58397 1594 aa13.64□□□□□ -0.23
PTCH1-206ENST00000421141 CAMSAP2Q08AD1 1489 aa13.63□□□□□ -0.23
PTCH1-206ENST00000421141 PANK3Q9H999 370 aa13.63□□□□□ -0.23
PTCH1-206ENST00000421141 FANCAO15360 1455 aa13.63□□□□□ -0.23
PTCH1-206ENST00000421141 GPATCH3Q96I76 525 aa13.63□□□□□ -0.23
PTCH1-206ENST00000421141 TEFQ10587 303 aa13.63□□□□□ -0.23
PTCH1-206ENST00000421141 ESCO1Q5FWF5 840 aa13.63□□□□□ -0.23
PTCH1-206ENST00000421141 DDRGK1Q96HY6 314 aa13.63□□□□□ -0.23
PTCH1-206ENST00000421141 ZRSR1Q15695 479 aaKnown RBP13.63□□□□□ -0.23
PTCH1-206ENST00000421141 GORABQ5T7V8 394 aa13.63□□□□□ -0.23
PTCH1-206ENST00000421141 NLRP13Q86W25 1043 aa13.63□□□□□ -0.23
PTCH1-206ENST00000421141 HFM1A2PYH4 1435 aa13.62□□□□□ -0.23
PTCH1-206ENST00000421141 AKNAQ7Z591 1439 aa13.62□□□□□ -0.23
PTCH1-206ENST00000421141 DCAF8L1A6NGE4 600 aa13.62□□□□□ -0.23
PTCH1-206ENST00000421141 DAPK1P53355 1430 aa13.62□□□□□ -0.23
PTCH1-206ENST00000421141 NAP1L2Q9ULW6 460 aaPredicted RBP13.62□□□□□ -0.23
PTCH1-206ENST00000421141 ISY1Q9ULR0 285 aaKnown RBP13.61□□□□□ -0.23
PTCH1-206ENST00000421141 DENND4BO75064 1496 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-206ENST00000421141 SMG6Q86US8 1419 aaKnown RBP13.61□□□□□ -0.23
PTCH1-206ENST00000421141 MCCP23508 829 aa13.6□□□□□ -0.23
PTCH1-206ENST00000421141 GOLGA6L22H0YM25 854 aa13.6□□□□□ -0.23
PTCH1-206ENST00000421141 ABTB2Q8N961 1025 aa13.6□□□□□ -0.23
PTCH1-206ENST00000421141 FAM135AQ9P2D6 1515 aa13.59□□□□□ -0.23
PTCH1-206ENST00000421141 PIP4K2BP78356 416 aa13.59□□□□□ -0.23
PTCH1-206ENST00000421141 RAPGEF4Q8WZA2 1011 aa13.59□□□□□ -0.23
PTCH1-206ENST00000421141 DMRT2Q9Y5R5 561 aa13.59□□□□□ -0.23
PTCH1-206ENST00000421141 SF3B2Q13435 895 aaKnown RBP13.58□□□□□ -0.23
PTCH1-206ENST00000421141 SMC4Q9NTJ3 1288 aa13.58□□□□□ -0.24
PTCH1-206ENST00000421141 ITPRIPQ8IWB1 547 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms