RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 ZC3H15Q8WU90 426 aaKnown RBP9.94□□□□□ -0.82
VPS54-204ENST00000416400 ADAM33Q9BZ11 813 aa9.94□□□□□ -0.82
VPS54-204ENST00000416400 C6orf132Q5T0Z8 1188 aa9.93□□□□□ -0.82
VPS54-204ENST00000416400 LCE2DQ5TA82 110 aaPredicted RBP9.93□□□□□ -0.82
VPS54-204ENST00000416400 CERKQ8TCT0 537 aa9.92□□□□□ -0.82
VPS54-204ENST00000416400 BCL2L12Q9HB09 334 aa9.92□□□□□ -0.82
VPS54-204ENST00000416400 PRIM1P49642 420 aaKnown RBP9.91□□□□□ -0.82
VPS54-204ENST00000416400 TSR1Q2NL82 804 aaKnown RBP9.91□□□□□ -0.82
VPS54-204ENST00000416400 KRI1Q8N9T8 703 aaKnown RBP9.91□□□□□ -0.82
VPS54-204ENST00000416400 HIC1Q14526 733 aa9.9□□□□□ -0.82
VPS54-204ENST00000416400 PTGDRQ13258 359 aa9.88□□□□□ -0.83
VPS54-204ENST00000416400 HS3ST6Q96QI5 342 aa9.88□□□□□ -0.83
VPS54-204ENST00000416400 KCNK17Q96T54 332 aa9.88□□□□□ -0.83
VPS54-204ENST00000416400 CDHR5Q9HBB8 845 aa9.88□□□□□ -0.83
VPS54-204ENST00000416400 GNPATO15228 680 aa9.87□□□□□ -0.83
VPS54-204ENST00000416400 ZNF687Q8N1G0 1237 aa9.87□□□□□ -0.83
VPS54-204ENST00000416400 ARHGAP33O14559 1287 aa9.86□□□□□ -0.83
VPS54-204ENST00000416400 ZMYND10O75800 440 aa9.86□□□□□ -0.83
VPS54-204ENST00000416400 PBX2P40425 430 aa9.86□□□□□ -0.83
VPS54-204ENST00000416400 PPP1R3GB7ZBB8 358 aa9.85□□□□□ -0.83
VPS54-204ENST00000416400 BARGINQ6ZT62 677 aa9.84□□□□□ -0.83
VPS54-204ENST00000416400 NPDC1Q9NQX5 325 aaPredicted RBP9.83□□□□□ -0.84
VPS54-204ENST00000416400 GPR37O15354 613 aa9.82□□□□□ -0.84
VPS54-204ENST00000416400 PRSS12P56730 875 aa9.82□□□□□ -0.84
VPS54-204ENST00000416400 COL9A1P20849 921 aa9.81□□□□□ -0.84
VPS54-204ENST00000416400 PSEN2P49810 448 aa9.81□□□□□ -0.84
VPS54-204ENST00000416400 MINK1Q8N4C8 1332 aaPredicted RBP9.81□□□□□ -0.84
VPS54-204ENST00000416400 MAP2K5Q13163 448 aa9.8□□□□□ -0.84
VPS54-204ENST00000416400 CDCA7LQ96GN5 454 aa9.8□□□□□ -0.84
VPS54-204ENST00000416400 RBM27Q9P2N5 1060 aaKnown RBP9.8□□□□□ -0.84
VPS54-204ENST00000416400 AXIN2Q9Y2T1 843 aa9.8□□□□□ -0.84
VPS54-204ENST00000416400 PADI6Q6TGC4 694 aa9.79□□□□□ -0.84
VPS54-204ENST00000416400 PACS2Q86VP3 889 aa9.79□□□□□ -0.84
VPS54-204ENST00000416400 SLC24A3Q9HC58 644 aa9.79□□□□□ -0.84
VPS54-204ENST00000416400 AK7Q96M32 723 aa9.78□□□□□ -0.84
VPS54-204ENST00000416400 POTEB3A0JP26 581 aa9.77□□□□□ -0.85
VPS54-204ENST00000416400 POTEBQ6S5H4 581 aa9.77□□□□□ -0.85
VPS54-204ENST00000416400 TRIM6-TRIM34B2RNG4 842 aa9.76□□□□□ -0.85
VPS54-204ENST00000416400 IRF6O14896 467 aa9.76□□□□□ -0.85
VPS54-204ENST00000416400 FECHP22830 423 aa9.76□□□□□ -0.85
VPS54-204ENST00000416400 NBPF26B4DH59 902 aa9.75□□□□□ -0.85
VPS54-204ENST00000416400 ONECUT3O60422 494 aaPredicted RBP9.75□□□□□ -0.85
VPS54-204ENST00000416400 OATP04181 439 aa9.75□□□□□ -0.85
VPS54-204ENST00000416400 STAC3Q96MF2 364 aa9.75□□□□□ -0.85
VPS54-204ENST00000416400 ZBED2Q9BTP6 218 aa9.75□□□□□ -0.85
VPS54-204ENST00000416400 PROX2Q3B8N5 592 aa9.74□□□□□ -0.85
VPS54-204ENST00000416400 DMRTA1Q5VZB9 504 aa9.74□□□□□ -0.85
VPS54-204ENST00000416400 RBM46Q8TBY0 533 aaKnown RBP9.74□□□□□ -0.85
VPS54-204ENST00000416400 POTEEQ6S8J3 1075 aa9.73□□□□□ -0.85
VPS54-204ENST00000416400 ANKRD13DQ6ZTN6 518 aa9.73□□□□□ -0.85
VPS54-204ENST00000416400 CCDC102AQ96A19 550 aa9.73□□□□□ -0.85
VPS54-204ENST00000416400 SLC4A5Q9BY07 1137 aa9.73□□□□□ -0.85
VPS54-204ENST00000416400 LSM11P83369 360 aaKnown RBP eCLIP9.72□□□□□ -0.852e-7■□□□□ 8
VPS54-204ENST00000416400 KIAA1468Q9P260 1216 aa9.72□□□□□ -0.85
VPS54-204ENST00000416400 TSKSQ9UJT2 592 aa9.72□□□□□ -0.85
VPS54-204ENST00000416400 TK2O00142 265 aa9.71□□□□□ -0.86
VPS54-204ENST00000416400 TTC13Q8NBP0 860 aa9.71□□□□□ -0.86
VPS54-204ENST00000416400 RABGEF1Q9UJ41 708 aa9.71□□□□□ -0.86
VPS54-204ENST00000416400 PNMA3Q9UL41 463 aa9.71□□□□□ -0.86
VPS54-204ENST00000416400 TATDN2Q93075 761 aa9.7□□□□□ -0.86
VPS54-204ENST00000416400 NBPF3Q9H094 633 aa9.7□□□□□ -0.86
VPS54-204ENST00000416400 VPS9D1Q9Y2B5 631 aa9.7□□□□□ -0.86
VPS54-204ENST00000416400 ADGRG1Q9Y653 693 aa9.7□□□□□ -0.86
VPS54-204ENST00000416400 NUDT18Q6ZVK8 323 aa9.69□□□□□ -0.86
VPS54-204ENST00000416400 CDAN1Q8IWY9 1227 aa9.69□□□□□ -0.86
VPS54-204ENST00000416400 FAM161AQ3B820 660 aa9.68□□□□□ -0.86
VPS54-204ENST00000416400 ADGRD1Q6QNK2 874 aa9.68□□□□□ -0.86
VPS54-204ENST00000416400 TRIM66O15016 1216 aa9.67□□□□□ -0.86
VPS54-204ENST00000416400 HDGFP51858 240 aaKnown RBP9.67□□□□□ -0.86
VPS54-204ENST00000416400 FAM198AQ9UFP1 575 aa9.67□□□□□ -0.86
VPS54-204ENST00000416400 TTLL12Q14166 644 aaPredicted RBP9.66□□□□□ -0.86
VPS54-204ENST00000416400 TMEM132AQ24JP5 1023 aa9.66□□□□□ -0.86
VPS54-204ENST00000416400 METTL3Q86U44 580 aaKnown RBP9.66□□□□□ -0.86
VPS54-204ENST00000416400 MRPL50Q8N5N7 158 aaKnown RBP9.66□□□□□ -0.86
VPS54-204ENST00000416400 GOLGA8CPA6NN73 597 aa9.65□□□□□ -0.86
VPS54-204ENST00000416400 NEUROD2Q15784 382 aa9.65□□□□□ -0.86
VPS54-204ENST00000416400 PXYLP1Q8TE99 480 aa9.65□□□□□ -0.86
VPS54-204ENST00000416400 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.64□□□□□ -0.87
VPS54-204ENST00000416400 SMAPO00193 183 aa9.64□□□□□ -0.87
VPS54-204ENST00000416400 SLC4A3P48751 1232 aa9.64□□□□□ -0.87
VPS54-204ENST00000416400 DNAJB2P25686 324 aa9.63□□□□□ -0.87
VPS54-204ENST00000416400 CLCN1P35523 988 aa9.63□□□□□ -0.87
VPS54-204ENST00000416400 PDE4DQ08499 809 aa9.63□□□□□ -0.87
VPS54-204ENST00000416400 LAPTM4BQ86VI4 370 aa9.63□□□□□ -0.87
VPS54-204ENST00000416400 EYA1Q99502 592 aa9.63□□□□□ -0.87
VPS54-204ENST00000416400 SEPT9Q9UHD8 586 aaPredicted RBP9.63□□□□□ -0.87
VPS54-204ENST00000416400 RCCD1A6NED2 376 aa9.62□□□□□ -0.87
VPS54-204ENST00000416400 AMHR2Q16671 573 aa9.62□□□□□ -0.87
VPS54-204ENST00000416400 FAM98CQ17RN3 349 aaKnown RBP9.62□□□□□ -0.87
VPS54-204ENST00000416400 MDM2Q00987 491 aaPredicted RBP9.61□□□□□ -0.87
VPS54-204ENST00000416400 BRPF1P55201 1214 aaPredicted RBP9.6□□□□□ -0.87
VPS54-204ENST00000416400 KRTAP3-3Q9BYR6 98 aa9.6□□□□□ -0.87
VPS54-204ENST00000416400 KRTAP3-2Q9BYR7 98 aa9.6□□□□□ -0.87
VPS54-204ENST00000416400 GPCPD1Q9NPB8 672 aa9.6□□□□□ -0.87
VPS54-204ENST00000416400 BHMG1C9JSJ3 638 aaPredicted RBP9.59□□□□□ -0.87
VPS54-204ENST00000416400 MMRN1Q13201 1228 aa9.59□□□□□ -0.87
VPS54-204ENST00000416400 GTF3C3Q9Y5Q9 886 aa9.59□□□□□ -0.87
VPS54-204ENST00000416400 C3orf80F5H4A9 247 aa9.58□□□□□ -0.88
VPS54-204ENST00000416400 RSPH4AQ5TD94 716 aa9.58□□□□□ -0.88
VPS54-204ENST00000416400 PHOX2BQ99453 314 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms