RNA–Protein interactions for RNA: ENST00000415749.1

EPHA4-204, Transcript of EPH receptor A4, humanhuman

TSL 4

Gene EPHA4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-204ENST00000415749 EN1Q05925 392 aaPredicted RBP11.34□□□□□ -0.59
EPHA4-204ENST00000415749 ERICH6Q7L0X2 663 aa11.34□□□□□ -0.59
EPHA4-204ENST00000415749 PSDA5PKW4 1024 aaPredicted RBP11.33□□□□□ -0.6
EPHA4-204ENST00000415749 MAP3K7O43318 606 aa11.33□□□□□ -0.6
EPHA4-204ENST00000415749 FOSBP53539 338 aa11.33□□□□□ -0.6
EPHA4-204ENST00000415749 KRI1Q8N9T8 703 aaKnown RBP11.33□□□□□ -0.6
EPHA4-204ENST00000415749 KHSRPQ92945 711 aaKnown RBP eCLIP11.33□□□□□ -0.6
EPHA4-204ENST00000415749 ZNF454Q8N9F8 522 aa11.32□□□□□ -0.6
EPHA4-204ENST00000415749 HOXB1P14653 301 aaPredicted RBP11.31□□□□□ -0.6
EPHA4-204ENST00000415749 HIC1Q14526 733 aa11.31□□□□□ -0.6
EPHA4-204ENST00000415749 SLC24A3Q9HC58 644 aa11.31□□□□□ -0.6
EPHA4-204ENST00000415749 GPR37O15354 613 aa11.3□□□□□ -0.6
EPHA4-204ENST00000415749 ZDHHC16Q969W1 377 aa11.3□□□□□ -0.6
EPHA4-204ENST00000415749 RBM33Q96EV2 1170 aaKnown RBP11.3□□□□□ -0.6
EPHA4-204ENST00000415749 GNPATO15228 680 aa11.29□□□□□ -0.6
EPHA4-204ENST00000415749 PRIM1P49642 420 aaKnown RBP11.29□□□□□ -0.6
EPHA4-204ENST00000415749 PTGDRQ13258 359 aa11.27□□□□□ -0.61
EPHA4-204ENST00000415749 PPP4R3BQ5MIZ7 849 aa11.27□□□□□ -0.61
EPHA4-204ENST00000415749 AK7Q96M32 723 aa11.27□□□□□ -0.61
EPHA4-204ENST00000415749 LHX6Q9UPM6 363 aa11.27□□□□□ -0.61
EPHA4-204ENST00000415749 CERKQ8TCT0 537 aa11.25□□□□□ -0.61
EPHA4-204ENST00000415749 MINK1Q8N4C8 1332 aaPredicted RBP11.25□□□□□ -0.61
EPHA4-204ENST00000415749 MAP2K5Q13163 448 aa11.24□□□□□ -0.61
EPHA4-204ENST00000415749 TMEM132AQ24JP5 1023 aa11.24□□□□□ -0.61
EPHA4-204ENST00000415749 C6orf132Q5T0Z8 1188 aa11.23□□□□□ -0.61
EPHA4-204ENST00000415749 CDHR5Q9HBB8 845 aa11.23□□□□□ -0.61
EPHA4-204ENST00000415749 TSR1Q2NL82 804 aaKnown RBP11.22□□□□□ -0.61
EPHA4-204ENST00000415749 ADAM33Q9BZ11 813 aa11.21□□□□□ -0.61
EPHA4-204ENST00000415749 NPDC1Q9NQX5 325 aaPredicted RBP11.2□□□□□ -0.62
EPHA4-204ENST00000415749 NCAPD3P42695 1498 aa11.19□□□□□ -0.62
EPHA4-204ENST00000415749 IRF6O14896 467 aa11.19□□□□□ -0.62
EPHA4-204ENST00000415749 BCL2L12Q9HB09 334 aa11.19□□□□□ -0.62
EPHA4-204ENST00000415749 PTPREP23469 700 aa11.17□□□□□ -0.62
EPHA4-204ENST00000415749 NEUROD2Q15784 382 aa11.17□□□□□ -0.62
EPHA4-204ENST00000415749 KCNH8Q96L42 1107 aa11.17□□□□□ -0.62
EPHA4-204ENST00000415749 C14orf37Q86TY3 774 aa11.16□□□□□ -0.62
EPHA4-204ENST00000415749 HOMEZQ8IX15 550 aa11.16□□□□□ -0.62
EPHA4-204ENST00000415749 CCDC102AQ96A19 550 aa11.16□□□□□ -0.62
EPHA4-204ENST00000415749 RBM27Q9P2N5 1060 aaKnown RBP11.16□□□□□ -0.62
EPHA4-204ENST00000415749 ERBB3P21860 1342 aa11.15□□□□□ -0.62
EPHA4-204ENST00000415749 TRIM66O15016 1216 aa11.15□□□□□ -0.62
EPHA4-204ENST00000415749 ST18O60284 1047 aa11.15□□□□□ -0.62
EPHA4-204ENST00000415749 FECHP22830 423 aa11.15□□□□□ -0.62
EPHA4-204ENST00000415749 BRPF1P55201 1214 aaPredicted RBP11.15□□□□□ -0.62
EPHA4-204ENST00000415749 NESP48681 1621 aa11.13□□□□□ -0.63
EPHA4-204ENST00000415749 EMP3P54852 163 aa11.13□□□□□ -0.63
EPHA4-204ENST00000415749 PPP1R3GB7ZBB8 358 aa11.12□□□□□ -0.63
EPHA4-204ENST00000415749 PRSS12P56730 875 aa11.11□□□□□ -0.63
EPHA4-204ENST00000415749 PDE4DQ08499 809 aa11.11□□□□□ -0.63
EPHA4-204ENST00000415749 VARS2Q5ST30 1063 aaKnown RBP11.1□□□□□ -0.63
EPHA4-204ENST00000415749 PADI6Q6TGC4 694 aa11.1□□□□□ -0.63
EPHA4-204ENST00000415749 FAM163AQ96GL9 167 aaPredicted RBP11.09□□□□□ -0.63
EPHA4-204ENST00000415749 CDCA7LQ96GN5 454 aa11.09□□□□□ -0.63
EPHA4-204ENST00000415749 ATAD2BQ9ULI0 1458 aa11.08□□□□□ -0.64
EPHA4-204ENST00000415749 OATP04181 439 aa11.08□□□□□ -0.64
EPHA4-204ENST00000415749 AMHR2Q16671 573 aa11.08□□□□□ -0.64
EPHA4-204ENST00000415749 KCNK17Q96T54 332 aa11.08□□□□□ -0.64
EPHA4-204ENST00000415749 COL9A1P20849 921 aa11.07□□□□□ -0.64
EPHA4-204ENST00000415749 TTC13Q8NBP0 860 aa11.07□□□□□ -0.64
EPHA4-204ENST00000415749 MARVELD3Q96A59 401 aa11.06□□□□□ -0.64
EPHA4-204ENST00000415749 PBX2P40425 430 aa11.05□□□□□ -0.64
EPHA4-204ENST00000415749 FAM205CA6NFA0 338 aa11.04□□□□□ -0.64
EPHA4-204ENST00000415749 RBM46Q8TBY0 533 aaKnown RBP11.04□□□□□ -0.64
EPHA4-204ENST00000415749 ADGRG1Q9Y653 693 aa11.04□□□□□ -0.64
EPHA4-204ENST00000415749 ARHGAP33O14559 1287 aa11.03□□□□□ -0.64
EPHA4-204ENST00000415749 ONECUT3O60422 494 aaPredicted RBP11.03□□□□□ -0.64
EPHA4-204ENST00000415749 TTLL12Q14166 644 aaPredicted RBP11.03□□□□□ -0.64
EPHA4-204ENST00000415749 KDM4CQ9H3R0 1056 aa11.03□□□□□ -0.64
EPHA4-204ENST00000415749 TRIM6-TRIM34B2RNG4 842 aa11.02□□□□□ -0.65
EPHA4-204ENST00000415749 NBPF26B4DH59 902 aa11.02□□□□□ -0.65
EPHA4-204ENST00000415749 METTL3Q86U44 580 aaKnown RBP11.02□□□□□ -0.65
EPHA4-204ENST00000415749 PACS2Q86VP3 889 aa11.02□□□□□ -0.65
EPHA4-204ENST00000415749 GPBP1L1Q9HC44 474 aaPredicted RBP11.02□□□□□ -0.65
EPHA4-204ENST00000415749 CLCN1P35523 988 aa11.01□□□□□ -0.65
EPHA4-204ENST00000415749 ZNF687Q8N1G0 1237 aa11.01□□□□□ -0.65
EPHA4-204ENST00000415749 THOC2Q8NI27 1593 aaKnown RBP11.01□□□□□ -0.65
EPHA4-204ENST00000415749 SMARCA2P51531 1590 aa11□□□□□ -0.65
EPHA4-204ENST00000415749 PARP9Q8IXQ6 854 aa11□□□□□ -0.65
EPHA4-204ENST00000415749 PXYLP1Q8TE99 480 aa11□□□□□ -0.65
EPHA4-204ENST00000415749 PSEN2P49810 448 aa10.99□□□□□ -0.65
EPHA4-204ENST00000415749 FAM161AQ3B820 660 aa10.99□□□□□ -0.65
EPHA4-204ENST00000415749 TSKSQ9UJT2 592 aa10.99□□□□□ -0.65
EPHA4-204ENST00000415749 HMGXB3Q12766 1538 aa10.99□□□□□ -0.65
EPHA4-204ENST00000415749 HS3ST6Q96QI5 342 aa10.98□□□□□ -0.65
EPHA4-204ENST00000415749 ZBED2Q9BTP6 218 aa10.98□□□□□ -0.65
EPHA4-204ENST00000415749 SLC4A5Q9BY07 1137 aa10.98□□□□□ -0.65
EPHA4-204ENST00000415749 GPCPD1Q9NPB8 672 aa10.98□□□□□ -0.65
EPHA4-204ENST00000415749 FAM198AQ9UFP1 575 aa10.97□□□□□ -0.65
EPHA4-204ENST00000415749 PDS5BQ9NTI5 1447 aa10.97□□□□□ -0.65
EPHA4-204ENST00000415749 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.96□□□□□ -0.65
EPHA4-204ENST00000415749 MDM2Q00987 491 aaPredicted RBP10.96□□□□□ -0.65
EPHA4-204ENST00000415749 PROX2Q3B8N5 592 aa10.96□□□□□ -0.65
EPHA4-204ENST00000415749 GIGYF2Q6Y7W6 1299 aaKnown RBP10.96□□□□□ -0.65
EPHA4-204ENST00000415749 PNMA3Q9UL41 463 aa10.96□□□□□ -0.65
EPHA4-204ENST00000415749 NUDT18Q6ZVK8 323 aa10.95□□□□□ -0.66
EPHA4-204ENST00000415749 TATDN2Q93075 761 aa10.95□□□□□ -0.66
EPHA4-204ENST00000415749 DDRGK1Q96HY6 314 aa10.95□□□□□ -0.66
EPHA4-204ENST00000415749 PHOX2BQ99453 314 aa10.95□□□□□ -0.66
EPHA4-204ENST00000415749 EYA1Q99502 592 aa10.94□□□□□ -0.66
EPHA4-204ENST00000415749 RABGEF1Q9UJ41 708 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms