RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 SYNJ2O15056 1496 aa4.22□□□□□ -1.73
MCF2-204ENST00000414978 GAPVD1Q14C86 1478 aa4.22□□□□□ -1.73
MCF2-204ENST00000414978 CCDC9Q9Y3X0 531 aaKnown RBP4.22□□□□□ -1.73
MCF2-204ENST00000414978 PARP9Q8IXQ6 854 aa4.22□□□□□ -1.73
MCF2-204ENST00000414978 POM121Q96HA1 1249 aa4.22□□□□□ -1.73
MCF2-204ENST00000414978 MS4A4AQ96JQ5 239 aa4.22□□□□□ -1.73
MCF2-204ENST00000414978 POLR3EQ9NVU0 708 aa4.22□□□□□ -1.73
MCF2-204ENST00000414978 TOP2BQ02880 1626 aa4.21□□□□□ -1.73
MCF2-204ENST00000414978 FOXD4L5Q5VV16 416 aaPredicted RBP4.21□□□□□ -1.73
MCF2-204ENST00000414978 FOXD4L4Q8WXT5 416 aaPredicted RBP4.21□□□□□ -1.73
MCF2-204ENST00000414978 FARP1Q9Y4F1 1045 aaPredicted RBP4.21□□□□□ -1.73
MCF2-204ENST00000414978 FAM161AQ3B820 660 aa4.21□□□□□ -1.74
MCF2-204ENST00000414978 MYT1LQ9UL68 1186 aa4.21□□□□□ -1.74
MCF2-204ENST00000414978 EMILIN3Q9NT22 766 aa4.21□□□□□ -1.74
MCF2-204ENST00000414978 CCDC61Q9Y6R9 512 aa4.21□□□□□ -1.74
MCF2-204ENST00000414978 ABCC10Q5T3U5 1492 aa4.2□□□□□ -1.74
MCF2-204ENST00000414978 PPP1R15BQ5SWA1 713 aa4.2□□□□□ -1.74
MCF2-204ENST00000414978 CEP170Q5SW79 1584 aa4.2□□□□□ -1.74
MCF2-204ENST00000414978 PRKAR2AP13861 404 aaKnown RBP4.2□□□□□ -1.74
MCF2-204ENST00000414978 TRPC6Q9Y210 931 aa4.2□□□□□ -1.74
MCF2-204ENST00000414978 CARNS1A5YM72 827 aa4.2□□□□□ -1.74
MCF2-204ENST00000414978 ADAMTS12P58397 1594 aa4.19□□□□□ -1.74
MCF2-204ENST00000414978 OXER1Q8TDS5 423 aa4.19□□□□□ -1.74
MCF2-204ENST00000414978 AKT1S1Q96B36 256 aa4.19□□□□□ -1.74
MCF2-204ENST00000414978 PHF12Q96QT6 1004 aa4.19□□□□□ -1.74
MCF2-204ENST00000414978 RBM25P49756 843 aaKnown RBP4.19□□□□□ -1.74
MCF2-204ENST00000414978 SNAPC4Q5SXM2 1469 aa4.19□□□□□ -1.74
MCF2-204ENST00000414978 DSG2Q14126 1118 aa4.19□□□□□ -1.74
MCF2-204ENST00000414978 FBXO31Q5XUX0 539 aaPredicted RBP4.19□□□□□ -1.74
MCF2-204ENST00000414978 DPY19L2Q6NUT2 758 aa4.19□□□□□ -1.74
MCF2-204ENST00000414978 POLA1P09884 1462 aaPredicted RBP4.18□□□□□ -1.74
MCF2-204ENST00000414978 GRIN2BQ13224 1484 aa4.18□□□□□ -1.74
MCF2-204ENST00000414978 TMEM106CQ9BVX2 250 aa4.18□□□□□ -1.74
MCF2-204ENST00000414978 NUP160Q12769 1436 aa4.18□□□□□ -1.74
MCF2-204ENST00000414978 A6NJR5 290 aa4.18□□□□□ -1.74
MCF2-204ENST00000414978 CRISPLD2Q9H0B8 497 aa4.18□□□□□ -1.74
MCF2-204ENST00000414978 MTMR7Q9Y216 660 aa4.18□□□□□ -1.74
MCF2-204ENST00000414978 MAP3K4Q9Y6R4 1608 aa4.17□□□□□ -1.74
MCF2-204ENST00000414978 PAK3O75914 559 aaPredicted RBP4.17□□□□□ -1.74
MCF2-204ENST00000414978 RFX1P22670 979 aa4.17□□□□□ -1.74
MCF2-204ENST00000414978 CSPP1Q1MSJ5 1256 aa4.17□□□□□ -1.74
MCF2-204ENST00000414978 RBM42Q9BTD8 480 aaKnown RBP4.17□□□□□ -1.74
MCF2-204ENST00000414978 CYB5RLQ6IPT4 315 aa4.17□□□□□ -1.74
MCF2-204ENST00000414978 GIGYF2Q6Y7W6 1299 aaKnown RBP4.17□□□□□ -1.74
MCF2-204ENST00000414978 CCDC97Q96F63 343 aaPredicted RBP4.17□□□□□ -1.74
MCF2-204ENST00000414978 REPIN1Q9BWE0 567 aaKnown RBP4.17□□□□□ -1.74
MCF2-204ENST00000414978 MS4A1P11836 297 aa4.16□□□□□ -1.74
MCF2-204ENST00000414978 DDRGK1Q96HY6 314 aa4.16□□□□□ -1.74
MCF2-204ENST00000414978 TRAK2O60296 914 aa4.16□□□□□ -1.74
MCF2-204ENST00000414978 SRPK2P78362 688 aaKnown RBP4.16□□□□□ -1.74
MCF2-204ENST00000414978 MDM2Q00987 491 aaPredicted RBP4.16□□□□□ -1.74
MCF2-204ENST00000414978 NOM1Q5C9Z4 860 aaKnown RBP4.16□□□□□ -1.74
MCF2-204ENST00000414978 PROCA1Q8NCQ7 364 aaPredicted RBP4.16□□□□□ -1.74
MCF2-204ENST00000414978 KIAA0586Q9BVV6 1533 aa4.16□□□□□ -1.74
MCF2-204ENST00000414978 UNCXA6NJT0 531 aa4.16□□□□□ -1.74
MCF2-204ENST00000414978 MAP3K9P80192 1104 aa4.16□□□□□ -1.74
MCF2-204ENST00000414978 ZNF579Q8NAF0 562 aaKnown RBP4.16□□□□□ -1.74
MCF2-204ENST00000414978 GZF1Q9H116 711 aaPredicted RBP4.16□□□□□ -1.74
MCF2-204ENST00000414978 ADCY10Q96PN6 1610 aa4.16□□□□□ -1.74
MCF2-204ENST00000414978 ADGRL1O94910 1474 aa4.15□□□□□ -1.74
MCF2-204ENST00000414978 SOX12O15370 315 aa4.15□□□□□ -1.75
MCF2-204ENST00000414978 RETREG2Q8NC44 543 aa4.15□□□□□ -1.75
MCF2-204ENST00000414978 RBM33Q96EV2 1170 aaKnown RBP4.15□□□□□ -1.75
MCF2-204ENST00000414978 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.15□□□□□ -1.75
MCF2-204ENST00000414978 ZRANB1Q9UGI0 708 aa4.15□□□□□ -1.75
MCF2-204ENST00000414978 IRF6O14896 467 aa4.15□□□□□ -1.75
MCF2-204ENST00000414978 CAMK2BQ13554 666 aa4.15□□□□□ -1.75
MCF2-204ENST00000414978 FBXO41Q8TF61 875 aa4.15□□□□□ -1.75
MCF2-204ENST00000414978 RUSC2Q8N2Y8 1516 aa4.14□□□□□ -1.75
MCF2-204ENST00000414978 FBXW7Q969H0 707 aa4.14□□□□□ -1.75
MCF2-204ENST00000414978 KIF12Q96FN5 646 aa4.14□□□□□ -1.75
MCF2-204ENST00000414978 PUS7Q96PZ0 661 aaKnown RBP4.14□□□□□ -1.75
MCF2-204ENST00000414978 ADAMTSL3P82987 1691 aa4.14□□□□□ -1.75
MCF2-204ENST00000414978 PCMTD1Q96MG8 357 aaPredicted RBP4.14□□□□□ -1.75
MCF2-204ENST00000414978 ABCA10Q8WWZ4 1543 aa4.14□□□□□ -1.75
MCF2-204ENST00000414978 KDM4FA0A1W2PPD8 638 aa4.13□□□□□ -1.75
MCF2-204ENST00000414978 AQRO60306 1485 aaKnown RBP eCLIP4.13□□□□□ -1.75
MCF2-204ENST00000414978 GNPATO15228 680 aa4.13□□□□□ -1.75
MCF2-204ENST00000414978 FLIIQ13045 1269 aa4.13□□□□□ -1.75
MCF2-204ENST00000414978 MCM6Q14566 821 aa4.13□□□□□ -1.75
MCF2-204ENST00000414978 MFSD10Q14728 455 aa4.13□□□□□ -1.75
MCF2-204ENST00000414978 TMC2Q8TDI7 906 aa4.13□□□□□ -1.75
MCF2-204ENST00000414978 GRIN2AQ12879 1464 aa4.13□□□□□ -1.75
MCF2-204ENST00000414978 MAP2K5Q13163 448 aa4.12□□□□□ -1.75
MCF2-204ENST00000414978 SPATA31D1Q6ZQQ2 1576 aa4.12□□□□□ -1.75
MCF2-204ENST00000414978 BIVM-ERCC5R4GMW8 1640 aa4.12□□□□□ -1.75
MCF2-204ENST00000414978 TMCO4Q5TGY1 634 aa4.12□□□□□ -1.75
MCF2-204ENST00000414978 PLPP6Q8IY26 295 aa4.12□□□□□ -1.75
MCF2-204ENST00000414978 GDPD2Q9HCC8 539 aa4.12□□□□□ -1.75
MCF2-204ENST00000414978 GOPCQ9HD26 462 aa4.12□□□□□ -1.75
MCF2-204ENST00000414978 PROSER2Q86WR7 435 aaPredicted RBP4.12□□□□□ -1.75
MCF2-204ENST00000414978 ERICH3Q5RHP9 1530 aa4.12□□□□□ -1.75
MCF2-204ENST00000414978 ABL2P42684 1182 aa4.11□□□□□ -1.75
MCF2-204ENST00000414978 BEGAINQ9BUH8 593 aa4.11□□□□□ -1.75
MCF2-204ENST00000414978 TMUB1Q9BVT8 246 aa4.11□□□□□ -1.75
MCF2-204ENST00000414978 CHMP4AQ9BY43 222 aa4.11□□□□□ -1.75
MCF2-204ENST00000414978 CDHR5Q9HBB8 845 aa4.11□□□□□ -1.75
MCF2-204ENST00000414978 GPHNQ9NQX3 736 aaPredicted RBP4.11□□□□□ -1.75
MCF2-204ENST00000414978 ZNF330Q9Y3S2 320 aaPredicted RBP4.11□□□□□ -1.75
MCF2-204ENST00000414978 CFAP43Q8NDM7 1665 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms