RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 HAP1P54257 671 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-204ENST00000412568 C9orf84Q5VXU9 1444 aa14.54□□□□□ -0.08
PTPRF-204ENST00000412568 SCAPERQ9BY12 1400 aa14.54□□□□□ -0.08
PTPRF-204ENST00000412568 ARHGEF11O15085 1522 aa14.54□□□□□ -0.08
PTPRF-204ENST00000412568 HDGFL2Q7Z4V5 671 aaPredicted RBP14.54□□□□□ -0.08
PTPRF-204ENST00000412568 RCAN3Q9UKA8 241 aa14.54□□□□□ -0.08
PTPRF-204ENST00000412568 CCDC7Q96M83 1385 aa14.54□□□□□ -0.08
PTPRF-204ENST00000412568 EHBP1L1Q8N3D4 1523 aa14.54□□□□□ -0.08
PTPRF-204ENST00000412568 DAPK1P53355 1430 aa14.53□□□□□ -0.08
PTPRF-204ENST00000412568 MIA2Q96PC5 1412 aa14.53□□□□□ -0.08
PTPRF-204ENST00000412568 CCDC184Q52MB2 194 aa14.51□□□□□ -0.09
PTPRF-204ENST00000412568 VGFO15240 615 aaPredicted RBP14.5□□□□□ -0.09
PTPRF-204ENST00000412568 WDR97A6NE52 1622 aa14.5□□□□□ -0.09
PTPRF-204ENST00000412568 ARXQ96QS3 562 aa14.5□□□□□ -0.09
PTPRF-204ENST00000412568 PLIN1O60240 522 aa14.5□□□□□ -0.09
PTPRF-204ENST00000412568 EIF3AQ14152 1382 aaKnown RBP14.49□□□□□ -0.09
PTPRF-204ENST00000412568 CLUAP1Q96AJ1 413 aa14.49□□□□□ -0.09
PTPRF-204ENST00000412568 MYBBP1AQ9BQG0 1328 aaKnown RBP14.49□□□□□ -0.09
PTPRF-204ENST00000412568 HECW1Q76N89 1606 aa14.48□□□□□ -0.09
PTPRF-204ENST00000412568 MYH16Q9H6N6 1097 aa14.48□□□□□ -0.09
PTPRF-204ENST00000412568 C11orf95C9JLR9 678 aaPredicted RBP14.47□□□□□ -0.09
PTPRF-204ENST00000412568 PTPRKQ15262 1439 aa14.46□□□□□ -0.09
PTPRF-204ENST00000412568 CUL7Q14999 1698 aa14.46□□□□□ -0.09
PTPRF-204ENST00000412568 ABCC5O15440 1437 aa14.46□□□□□ -0.1
PTPRF-204ENST00000412568 TERF2IPQ9NYB0 399 aa14.46□□□□□ -0.1
PTPRF-204ENST00000412568 BCL2L13Q9BXK5 485 aa14.45□□□□□ -0.1
PTPRF-204ENST00000412568 ERICH6BQ5W0A0 696 aa14.45□□□□□ -0.1
PTPRF-204ENST00000412568 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.45□□□□□ -0.1
PTPRF-204ENST00000412568 APAF1O14727 1248 aa14.44□□□□□ -0.1
PTPRF-204ENST00000412568 KIAA1107Q9UPP5 1409 aa14.44□□□□□ -0.1
PTPRF-204ENST00000412568 SUPT6HQ7KZ85 1726 aaKnown RBP14.44□□□□□ -0.1
PTPRF-204ENST00000412568 GOLGA2Q08379 1002 aa14.44□□□□□ -0.1
PTPRF-204ENST00000412568 LTV1Q96GA3 475 aaPredicted RBP14.44□□□□□ -0.1
PTPRF-204ENST00000412568 EID1Q9Y6B2 187 aa14.44□□□□□ -0.1
PTPRF-204ENST00000412568 MAGI1Q96QZ7 1491 aaPredicted RBP14.43□□□□□ -0.1
PTPRF-204ENST00000412568 NGDNQ8NEJ9 315 aaKnown RBP14.43□□□□□ -0.1
PTPRF-204ENST00000412568 CABP2Q9NPB3 220 aa14.43□□□□□ -0.1
PTPRF-204ENST00000412568 ELL2O00472 640 aaPredicted RBP14.42□□□□□ -0.1
PTPRF-204ENST00000412568 ZBED9Q6R2W3 1325 aa14.42□□□□□ -0.1
PTPRF-204ENST00000412568 MAP3K1Q13233 1512 aa14.41□□□□□ -0.1
PTPRF-204ENST00000412568 CENPJQ9HC77 1338 aaPredicted RBP14.41□□□□□ -0.1
PTPRF-204ENST00000412568 RTN4Q9NQC3 1192 aaKnown RBP14.41□□□□□ -0.1
PTPRF-204ENST00000412568 THOC2Q8NI27 1593 aaKnown RBP14.41□□□□□ -0.1
PTPRF-204ENST00000412568 APBB1O00213 710 aa14.4□□□□□ -0.1
PTPRF-204ENST00000412568 CNTLNQ9NXG0 1405 aa14.4□□□□□ -0.1
PTPRF-204ENST00000412568 GGNBP2Q9H3C7 697 aa14.4□□□□□ -0.1
PTPRF-204ENST00000412568 EVC2Q86UK5 1308 aa14.39□□□□□ -0.11
PTPRF-204ENST00000412568 CAMSAP2Q08AD1 1489 aa14.38□□□□□ -0.11
PTPRF-204ENST00000412568 SLC12A5Q9H2X9 1139 aa14.38□□□□□ -0.11
PTPRF-204ENST00000412568 NOP58Q9Y2X3 529 aaKnown RBP14.38□□□□□ -0.11
PTPRF-204ENST00000412568 PTPN23Q9H3S7 1636 aa14.38□□□□□ -0.11
PTPRF-204ENST00000412568 NCOA1Q15788 1441 aa14.38□□□□□ -0.11
PTPRF-204ENST00000412568 ANKRD30BQ9BXX2 1392 aa14.37□□□□□ -0.11
PTPRF-204ENST00000412568 EXOC6Q8TAG9 804 aa14.36□□□□□ -0.11
PTPRF-204ENST00000412568 PNNQ9H307 717 aaKnown RBP14.36□□□□□ -0.11
PTPRF-204ENST00000412568 CDCA7LQ96GN5 454 aa14.36□□□□□ -0.11
PTPRF-204ENST00000412568 ADAMTS8Q9UP79 889 aa14.36□□□□□ -0.11
PTPRF-204ENST00000412568 RTF1Q92541 710 aaKnown RBP14.35□□□□□ -0.11
PTPRF-204ENST00000412568 CGNL1Q0VF96 1302 aa14.35□□□□□ -0.11
PTPRF-204ENST00000412568 TCERG1O14776 1098 aaKnown RBP14.35□□□□□ -0.11
PTPRF-204ENST00000412568 SMC4Q9NTJ3 1288 aa14.34□□□□□ -0.11
PTPRF-204ENST00000412568 ITPRIPQ8IWB1 547 aa14.34□□□□□ -0.11
PTPRF-204ENST00000412568 ROCK1Q13464 1354 aa14.33□□□□□ -0.11
PTPRF-204ENST00000412568 AMPHP49418 695 aa14.33□□□□□ -0.12
PTPRF-204ENST00000412568 DDRGK1Q96HY6 314 aa14.33□□□□□ -0.12
PTPRF-204ENST00000412568 NUP153P49790 1475 aaKnown RBP14.32□□□□□ -0.12
PTPRF-204ENST00000412568 PDE3BQ13370 1112 aa14.32□□□□□ -0.12
PTPRF-204ENST00000412568 ATP10BO94823 1461 aa14.32□□□□□ -0.12
PTPRF-204ENST00000412568 GLIPR1L2Q4G1C9 344 aa14.31□□□□□ -0.12
PTPRF-204ENST00000412568 GPATCH8Q9UKJ3 1502 aaKnown RBP14.31□□□□□ -0.12
PTPRF-204ENST00000412568 NUTM2GQ5VZR2 741 aa14.31□□□□□ -0.12
PTPRF-204ENST00000412568 PRAM1Q96QH2 718 aa14.31□□□□□ -0.12
PTPRF-204ENST00000412568 AKNAQ7Z591 1439 aa14.3□□□□□ -0.12
PTPRF-204ENST00000412568 MTHFSP49914 203 aa14.3□□□□□ -0.12
PTPRF-204ENST00000412568 CCDC141Q6ZP82 1450 aa14.3□□□□□ -0.12
PTPRF-204ENST00000412568 TXNDC2Q86VQ3 553 aa14.3□□□□□ -0.12
PTPRF-204ENST00000412568 HMOX1P09601 288 aa14.3□□□□□ -0.12
PTPRF-204ENST00000412568 CSB-PGBD3P0DP91 1061 aa14.3□□□□□ -0.12
PTPRF-204ENST00000412568 KIF21AQ7Z4S6 1674 aa14.29□□□□□ -0.12
PTPRF-204ENST00000412568 PLEKHH2Q8IVE3 1493 aa14.29□□□□□ -0.12
PTPRF-204ENST00000412568 ANP32BQ92688 251 aaKnown RBP14.29□□□□□ -0.12
PTPRF-204ENST00000412568 COG3Q96JB2 828 aa14.29□□□□□ -0.12
PTPRF-204ENST00000412568 SPRYD3Q8NCJ5 442 aa14.29□□□□□ -0.12
PTPRF-204ENST00000412568 CRBNQ96SW2 442 aa14.29□□□□□ -0.12
PTPRF-204ENST00000412568 MAPKBP1O60336 1514 aa14.29□□□□□ -0.12
PTPRF-204ENST00000412568 FBXO31Q5XUX0 539 aaPredicted RBP14.28□□□□□ -0.12
PTPRF-204ENST00000412568 SLC26A8Q96RN1 970 aa14.28□□□□□ -0.12
PTPRF-204ENST00000412568 COG6Q9Y2V7 657 aa14.28□□□□□ -0.12
PTPRF-204ENST00000412568 CD109Q6YHK3 1445 aa14.27□□□□□ -0.12
PTPRF-204ENST00000412568 RRP1P56182 461 aaKnown RBP14.27□□□□□ -0.12
PTPRF-204ENST00000412568 TPRNQ4KMQ1 711 aa14.27□□□□□ -0.12
PTPRF-204ENST00000412568 PPP2R1AP30153 589 aa14.26□□□□□ -0.13
PTPRF-204ENST00000412568 DEKP35659 375 aaKnown RBP14.26□□□□□ -0.13
PTPRF-204ENST00000412568 SLC4A10Q6U841 1118 aa14.26□□□□□ -0.13
PTPRF-204ENST00000412568 MS4A1P11836 297 aa14.26□□□□□ -0.13
PTPRF-204ENST00000412568 BECN1Q14457 450 aa14.25□□□□□ -0.13
PTPRF-204ENST00000412568 PNISRQ8TF01 805 aaKnown RBP14.25□□□□□ -0.13
PTPRF-204ENST00000412568 ADGRF5Q8IZF2 1346 aa14.25□□□□□ -0.13
PTPRF-204ENST00000412568 ZNF330Q9Y3S2 320 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-204ENST00000412568 OS9Q13438 667 aaPredicted RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms