RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 P3H3Q8IVL6 736 aa7.06□□□□□ -1.28
SF3B1-202ENST00000409915 PTPRGP23470 1445 aa7.05□□□□□ -1.28
SF3B1-202ENST00000409915 MAMSTRQ6ZN01 415 aa7.05□□□□□ -1.28
SF3B1-202ENST00000409915 SCUBE2Q9NQ36 999 aa7.05□□□□□ -1.28
SF3B1-202ENST00000409915 TNIKQ9UKE5 1360 aa7.05□□□□□ -1.28
SF3B1-202ENST00000409915 ADCY10Q96PN6 1610 aa7.05□□□□□ -1.28
SF3B1-202ENST00000409915 PSEN1P49768 467 aa7.04□□□□□ -1.28
SF3B1-202ENST00000409915 ZNF467Q7Z7K2 595 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-202ENST00000409915 SAMD9Q5K651 1589 aa7.03□□□□□ -1.28
SF3B1-202ENST00000409915 FHOD3Q2V2M9 1422 aa7.03□□□□□ -1.28
SF3B1-202ENST00000409915 LOC105371045A0A1W2PR82 267 aa7.02□□□□□ -1.29
SF3B1-202ENST00000409915 GTPBP6O43824 516 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-202ENST00000409915 IRX5P78411 483 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-202ENST00000409915 NKX1-1Q15270 411 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-202ENST00000409915 PLB1Q6P1J6 1458 aa7.02□□□□□ -1.29
SF3B1-202ENST00000409915 PDIA4P13667 645 aaKnown RBP7.01□□□□□ -1.29
SF3B1-202ENST00000409915 ABCC2Q92887 1545 aa7.01□□□□□ -1.29
SF3B1-202ENST00000409915 UACAQ9BZF9 1416 aa7.01□□□□□ -1.29
SF3B1-202ENST00000409915 ARID3CA6NKF2 412 aa7□□□□□ -1.29
SF3B1-202ENST00000409915 PLCG2P16885 1265 aa7□□□□□ -1.29
SF3B1-202ENST00000409915 PDAP1Q13442 181 aaKnown RBP7□□□□□ -1.29
SF3B1-202ENST00000409915 C1orf115Q9H7X2 142 aa7□□□□□ -1.29
SF3B1-202ENST00000409915 SLC24A3Q9HC58 644 aa7□□□□□ -1.29
SF3B1-202ENST00000409915 ARHGAP35Q9NRY4 1499 aa6.99□□□□□ -1.29
SF3B1-202ENST00000409915 PDCD7Q8N8D1 485 aaKnown RBP6.99□□□□□ -1.29
SF3B1-202ENST00000409915 ZC3H15Q8WU90 426 aaKnown RBP6.99□□□□□ -1.29
SF3B1-202ENST00000409915 FAM163AQ96GL9 167 aaPredicted RBP6.99□□□□□ -1.29
SF3B1-202ENST00000409915 CABP2Q9NPB3 220 aa6.99□□□□□ -1.29
SF3B1-202ENST00000409915 EFCAB5A4FU69 1503 aa6.99□□□□□ -1.29
SF3B1-202ENST00000409915 ABCA8O94911 1581 aa6.99□□□□□ -1.29
SF3B1-202ENST00000409915 UHRF1BP1LA0JNW5 1464 aa6.98□□□□□ -1.29
SF3B1-202ENST00000409915 GOLGA2Q08379 1002 aa6.98□□□□□ -1.29
SF3B1-202ENST00000409915 IER5LQ5T953 404 aa6.98□□□□□ -1.29
SF3B1-202ENST00000409915 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-202ENST00000409915 ZFP91Q96JP5 570 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-202ENST00000409915 ZCCHC11Q5TAX3 1644 aaKnown RBP6.97□□□□□ -1.29
SF3B1-202ENST00000409915 MAPKBP1O60336 1514 aa6.96□□□□□ -1.29
SF3B1-202ENST00000409915 KDM5BQ9UGL1 1544 aa6.96□□□□□ -1.29
SF3B1-202ENST00000409915 RIOK3O14730 519 aaKnown RBP6.96□□□□□ -1.3
SF3B1-202ENST00000409915 DPY19L2Q6NUT2 758 aa6.96□□□□□ -1.3
SF3B1-202ENST00000409915 NECTIN2Q92692 538 aa6.96□□□□□ -1.3
SF3B1-202ENST00000409915 RAPGEF6Q8TEU7 1601 aa6.96□□□□□ -1.3
SF3B1-202ENST00000409915 CLIP1P30622 1438 aa6.95□□□□□ -1.3
SF3B1-202ENST00000409915 ASXL2Q76L83 1435 aa6.95□□□□□ -1.3
SF3B1-202ENST00000409915 KCNV2Q8TDN2 545 aa6.95□□□□□ -1.3
SF3B1-202ENST00000409915 PLSCR2Q9NRY7 297 aa6.95□□□□□ -1.3
SF3B1-202ENST00000409915 NUP153P49790 1475 aaKnown RBP6.95□□□□□ -1.3
SF3B1-202ENST00000409915 DIP2BQ9P265 1576 aa6.95□□□□□ -1.3
SF3B1-202ENST00000409915 EIF5BO60841 1220 aaKnown RBP6.94□□□□□ -1.3
SF3B1-202ENST00000409915 MKRN3Q13064 507 aaKnown RBP6.94□□□□□ -1.3
SF3B1-202ENST00000409915 EFCAB3Q8N7B9 438 aa6.94□□□□□ -1.3
SF3B1-202ENST00000409915 CEP162Q5TB80 1403 aa6.93□□□□□ -1.3
SF3B1-202ENST00000409915 ABCC10Q5T3U5 1492 aa6.93□□□□□ -1.3
SF3B1-202ENST00000409915 KIF13AQ9H1H9 1805 aa6.93□□□□□ -1.3
SF3B1-202ENST00000409915 POTEMA6NI47 508 aa6.93□□□□□ -1.3
SF3B1-202ENST00000409915 FAM69CQ0P6D2 419 aa6.93□□□□□ -1.3
SF3B1-202ENST00000409915 OCEL1Q9H607 264 aa6.93□□□□□ -1.3
SF3B1-202ENST00000409915 PCF11O94913 1555 aaKnown RBP6.93□□□□□ -1.3
SF3B1-202ENST00000409915 ATP10BO94823 1461 aa6.92□□□□□ -1.3
SF3B1-202ENST00000409915 CDK13Q14004 1512 aaKnown RBP6.92□□□□□ -1.3
SF3B1-202ENST00000409915 POTEGQ6S5H5 508 aa6.92□□□□□ -1.3
SF3B1-202ENST00000409915 ILDR1Q86SU0 546 aaPredicted RBP6.92□□□□□ -1.3
SF3B1-202ENST00000409915 SLAIN1Q8ND83 568 aa6.92□□□□□ -1.3
SF3B1-202ENST00000409915 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.92□□□□□ -1.33e-27■■□□□ 14.4
SF3B1-202ENST00000409915 ATP1B4Q9UN42 357 aaPredicted RBP6.92□□□□□ -1.3
SF3B1-202ENST00000409915 FMN1Q68DA7 1419 aa6.92□□□□□ -1.3
SF3B1-202ENST00000409915 WDR7Q9Y4E6 1490 aa6.92□□□□□ -1.3
SF3B1-202ENST00000409915 LCE2DQ5TA82 110 aaPredicted RBP6.91□□□□□ -1.3
SF3B1-202ENST00000409915 EPRSP07814 1512 aaKnown RBP6.91□□□□□ -1.3
SF3B1-202ENST00000409915 HECW1Q76N89 1606 aa6.9□□□□□ -1.3
SF3B1-202ENST00000409915 APBB1O00213 710 aa6.9□□□□□ -1.3
SF3B1-202ENST00000409915 VGFO15240 615 aaPredicted RBP6.9□□□□□ -1.3
SF3B1-202ENST00000409915 IGSF3O75054 1194 aa6.89□□□□□ -1.31
SF3B1-202ENST00000409915 MS4A4AQ96JQ5 239 aa6.89□□□□□ -1.31
SF3B1-202ENST00000409915 KCNH8Q96L42 1107 aa6.89□□□□□ -1.31
SF3B1-202ENST00000409915 BCL11BQ9C0K0 894 aaPredicted RBP6.89□□□□□ -1.31
SF3B1-202ENST00000409915 TSPOAP1O95153 1857 aa6.88□□□□□ -1.31
SF3B1-202ENST00000409915 LRRIQ1Q96JM4 1722 aa6.88□□□□□ -1.31
SF3B1-202ENST00000409915 CASKIN1Q8WXD9 1431 aa6.88□□□□□ -1.31
SF3B1-202ENST00000409915 KCTD17Q8N5Z5 321 aa6.88□□□□□ -1.31
SF3B1-202ENST00000409915 WDR70Q9NW82 654 aa6.88□□□□□ -1.31
SF3B1-202ENST00000409915 GLI2P10070 1586 aa6.87□□□□□ -1.31
SF3B1-202ENST00000409915 FYCO1Q9BQS8 1478 aa6.87□□□□□ -1.31
SF3B1-202ENST00000409915 PHF8Q9UPP1 1060 aa6.87□□□□□ -1.31
SF3B1-202ENST00000409915 PPRC1Q5VV67 1664 aaKnown RBP6.87□□□□□ -1.31
SF3B1-202ENST00000409915 MAP3K4Q9Y6R4 1608 aa6.87□□□□□ -1.31
SF3B1-202ENST00000409915 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.86□□□□□ -1.31
SF3B1-202ENST00000409915 STK24Q9Y6E0 443 aa6.86□□□□□ -1.31
SF3B1-202ENST00000409915 STK25O00506 426 aa6.85□□□□□ -1.31
SF3B1-202ENST00000409915 RAD21O60216 631 aa6.85□□□□□ -1.31
SF3B1-202ENST00000409915 IL27Q8NEV9 243 aa6.85□□□□□ -1.31
SF3B1-202ENST00000409915 TTC37Q6PGP7 1564 aa6.85□□□□□ -1.31
SF3B1-202ENST00000409915 MAGI3Q5TCQ9 1506 aa6.85□□□□□ -1.31
SF3B1-202ENST00000409915 CD109Q6YHK3 1445 aa6.84□□□□□ -1.31
SF3B1-202ENST00000409915 KIF14Q15058 1648 aa6.84□□□□□ -1.31
SF3B1-202ENST00000409915 ABCA9Q8IUA7 1624 aa6.84□□□□□ -1.31
SF3B1-202ENST00000409915 PLEKHD1A6NEE1 506 aa6.84□□□□□ -1.31
SF3B1-202ENST00000409915 C3orf67Q6ZVT6 689 aa6.84□□□□□ -1.31
SF3B1-202ENST00000409915 GPBP1L1Q9HC44 474 aaPredicted RBP6.84□□□□□ -1.31
SF3B1-202ENST00000409915 CCDC18Q5T9S5 1454 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms