RNA–Protein interactions for RNA: ENST00000409031.5

SMPD4-202, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD4, Length 4,896 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-202ENST00000409031 KIAA1211Q6ZU35 1233 aa21.95■■□□□ 1.1
SMPD4-202ENST00000409031 COG6Q9Y2V7 657 aa21.95■■□□□ 1.1
SMPD4-202ENST00000409031 TRAK2O60296 914 aa21.95■■□□□ 1.1
SMPD4-202ENST00000409031 OS9Q13438 667 aaPredicted RBP21.94■■□□□ 1.1
SMPD4-202ENST00000409031 ANKRD30AQ9BXX3 1397 aa21.94■■□□□ 1.1
SMPD4-202ENST00000409031 ZNF771Q7L3S4 317 aaPredicted RBP21.94■■□□□ 1.1
SMPD4-202ENST00000409031 AAMPQ13685 434 aa21.93■■□□□ 1.1
SMPD4-202ENST00000409031 EIF3AQ14152 1382 aaKnown RBP21.92■■□□□ 1.1
SMPD4-202ENST00000409031 PANK3Q9H999 370 aa21.92■■□□□ 1.1
SMPD4-202ENST00000409031 UACAQ9BZF9 1416 aa21.91■■□□□ 1.1
SMPD4-202ENST00000409031 SMG6Q86US8 1419 aaKnown RBP21.91■■□□□ 1.1
SMPD4-202ENST00000409031 APBB1O00213 710 aa21.91■■□□□ 1.1
SMPD4-202ENST00000409031 R3HCC1Q9Y3T6 440 aaKnown RBP21.9■■□□□ 1.1
SMPD4-202ENST00000409031 NASPP49321 788 aaPredicted RBP21.9■■□□□ 1.1
SMPD4-202ENST00000409031 BRD4O60885 1362 aaPredicted RBP21.9■■□□□ 1.1
SMPD4-202ENST00000409031 RRBP1Q9P2E9 1410 aaKnown RBP21.89■■□□□ 1.1
SMPD4-202ENST00000409031 ZKSCAN2Q63HK3 967 aa21.89■■□□□ 1.09
SMPD4-202ENST00000409031 C22orf23Q9BZE7 217 aa21.89■■□□□ 1.09
SMPD4-202ENST00000409031 AKNAQ7Z591 1439 aa21.89■■□□□ 1.09
SMPD4-202ENST00000409031 NPM1P06748 294 aaKnown RBP eCLIP21.88■■□□□ 1.09
SMPD4-202ENST00000409031 KIF16BQ96L93 1317 aa21.87■■□□□ 1.09
SMPD4-202ENST00000409031 NUCB2P80303 420 aa21.87■■□□□ 1.09
SMPD4-202ENST00000409031 POGKQ9P215 609 aa21.87■■□□□ 1.09
SMPD4-202ENST00000409031 FHOD3Q2V2M9 1422 aa21.86■■□□□ 1.09
SMPD4-202ENST00000409031 KIF21BO75037 1637 aa21.86■■□□□ 1.09
SMPD4-202ENST00000409031 PODXL2Q9NZ53 605 aa21.85■■□□□ 1.09
SMPD4-202ENST00000409031 HMMRO75330 724 aa21.85■■□□□ 1.09
SMPD4-202ENST00000409031 CCDC173Q0VFZ6 552 aa21.84■■□□□ 1.09
SMPD4-202ENST00000409031 ESPNB1AK53 854 aa21.83■■□□□ 1.08
SMPD4-202ENST00000409031 ATP6V1DQ9Y5K8 247 aa21.83■■□□□ 1.08
SMPD4-202ENST00000409031 APAF1O14727 1248 aa21.83■■□□□ 1.08
SMPD4-202ENST00000409031 TPM4P67936 248 aa21.82■■□□□ 1.08
SMPD4-202ENST00000409031 NAP1L2Q9ULW6 460 aaPredicted RBP21.82■■□□□ 1.08
SMPD4-202ENST00000409031 A0A0U1RQG5 324 aaPredicted RBP21.82■■□□□ 1.08
SMPD4-202ENST00000409031 CCDC39Q9UFE4 941 aa21.81■■□□□ 1.08
SMPD4-202ENST00000409031 ANKRD45Q5TZF3 282 aa21.8■■□□□ 1.08
SMPD4-202ENST00000409031 FOXD4L5Q5VV16 416 aaPredicted RBP21.8■■□□□ 1.08
SMPD4-202ENST00000409031 FOXD4L4Q8WXT5 416 aaPredicted RBP21.8■■□□□ 1.08
SMPD4-202ENST00000409031 BCL2L13Q9BXK5 485 aa21.8■■□□□ 1.08
SMPD4-202ENST00000409031 DDX19BQ9UMR2 479 aa21.8■■□□□ 1.08
SMPD4-202ENST00000409031 DIAPH3Q9NSV4 1193 aa21.79■■□□□ 1.08
SMPD4-202ENST00000409031 GOLGA6L1Q8N7Z2 621 aa21.79■■□□□ 1.08
SMPD4-202ENST00000409031 EIF4G1Q04637 1599 aaKnown RBP21.77■■□□□ 1.08
SMPD4-202ENST00000409031 HMGN5P82970 282 aaKnown RBP21.77■■□□□ 1.08
SMPD4-202ENST00000409031 GRPEL1Q9HAV7 217 aa21.77■■□□□ 1.08
SMPD4-202ENST00000409031 SENP3Q9H4L4 574 aaPredicted RBP21.77■■□□□ 1.08
SMPD4-202ENST00000409031 SRPK2P78362 688 aaKnown RBP21.77■■□□□ 1.07
SMPD4-202ENST00000409031 KANK1Q14678 1352 aa21.76■■□□□ 1.07
SMPD4-202ENST00000409031 NOL8Q76FK4 1167 aaKnown RBP21.75■■□□□ 1.07
SMPD4-202ENST00000409031 PNISRQ8TF01 805 aaKnown RBP21.75■■□□□ 1.07
SMPD4-202ENST00000409031 TRIM6-TRIM34B2RNG4 842 aa21.75■■□□□ 1.07
SMPD4-202ENST00000409031 CDCA7LQ96GN5 454 aa21.75■■□□□ 1.07
SMPD4-202ENST00000409031 DZIP1LQ8IYY4 767 aaKnown RBP21.74■■□□□ 1.07
SMPD4-202ENST00000409031 REC8O95072 547 aa21.74■■□□□ 1.07
SMPD4-202ENST00000409031 RRP7AQ9Y3A4 280 aaKnown RBP21.73■■□□□ 1.07
SMPD4-202ENST00000409031 MCTP1Q6DN14 999 aa21.73■■□□□ 1.07
SMPD4-202ENST00000409031 MCM4P33991 863 aa21.73■■□□□ 1.07
SMPD4-202ENST00000409031 RBM10P98175 930 aaKnown RBP21.73■■□□□ 1.07
SMPD4-202ENST00000409031 FGD6Q6ZV73 1430 aa21.72■■□□□ 1.07
SMPD4-202ENST00000409031 CCDC184Q52MB2 194 aa21.71■■□□□ 1.07
SMPD4-202ENST00000409031 TEX35Q5T0J7 233 aa21.71■■□□□ 1.07
SMPD4-202ENST00000409031 GOLGA6L19H0YKK7 550 aa21.69■■□□□ 1.06
SMPD4-202ENST00000409031 HDGFL2Q7Z4V5 671 aaPredicted RBP21.69■■□□□ 1.06
SMPD4-202ENST00000409031 LRRC9Q6ZRR7 1453 aa21.69■■□□□ 1.06
SMPD4-202ENST00000409031 WDR97A6NE52 1622 aa21.68■■□□□ 1.06
SMPD4-202ENST00000409031 CCDC66A2RUB6 948 aa21.68■■□□□ 1.06
SMPD4-202ENST00000409031 PDE3AQ14432 1141 aa21.68■■□□□ 1.06
SMPD4-202ENST00000409031 RTF1Q92541 710 aaKnown RBP21.67■■□□□ 1.06
SMPD4-202ENST00000409031 MIA2Q96PC5 1412 aa21.67■■□□□ 1.06
SMPD4-202ENST00000409031 GPS2Q13227 327 aa21.67■■□□□ 1.06
SMPD4-202ENST00000409031 MBD3O95983 291 aa21.66■■□□□ 1.06
SMPD4-202ENST00000409031 TAOK2Q9UL54 1235 aa21.66■■□□□ 1.06
SMPD4-202ENST00000409031 SMARCA2P51531 1590 aa21.66■■□□□ 1.06
SMPD4-202ENST00000409031 C11orf95C9JLR9 678 aaPredicted RBP21.66■■□□□ 1.06
SMPD4-202ENST00000409031 TPM3P06753 285 aa21.66■■□□□ 1.06
SMPD4-202ENST00000409031 PANK1Q8TE04 598 aa21.66■■□□□ 1.06
SMPD4-202ENST00000409031 CCDC144AA2RUR9 1427 aa21.65■■□□□ 1.06
SMPD4-202ENST00000409031 ZNF592Q92610 1267 aa21.65■■□□□ 1.06
SMPD4-202ENST00000409031 PDCL3Q9H2J4 239 aa21.65■■□□□ 1.06
SMPD4-202ENST00000409031 BECN2A8MW95 431 aa21.65■■□□□ 1.06
SMPD4-202ENST00000409031 LMOD3Q0VAK6 560 aa21.65■■□□□ 1.06
SMPD4-202ENST00000409031 WASHC2CQ9Y4E1 1318 aa21.64■■□□□ 1.06
SMPD4-202ENST00000409031 FOXD4L6Q3SYB3 417 aaPredicted RBP21.64■■□□□ 1.05
SMPD4-202ENST00000409031 CAVIN1Q6NZI2 390 aaKnown RBP21.64■■□□□ 1.05
SMPD4-202ENST00000409031 FOXD4L3Q6VB84 417 aaPredicted RBP21.64■■□□□ 1.05
SMPD4-202ENST00000409031 RSPH4AQ5TD94 716 aa21.63■■□□□ 1.05
SMPD4-202ENST00000409031 ADAMTS8Q9UP79 889 aa21.63■■□□□ 1.05
SMPD4-202ENST00000409031 C14orf37Q86TY3 774 aa21.63■■□□□ 1.05
SMPD4-202ENST00000409031 ZSCAN30Q86W11 494 aa21.63■■□□□ 1.05
SMPD4-202ENST00000409031 CIZ1Q9ULV3 898 aaPredicted RBP21.63■■□□□ 1.05
SMPD4-202ENST00000409031 GNL2Q13823 731 aaKnown RBP21.62■■□□□ 1.05
SMPD4-202ENST00000409031 ZMYND15Q9H091 742 aa21.62■■□□□ 1.05
SMPD4-202ENST00000409031 STK31Q9BXU1 1019 aa21.62■■□□□ 1.05
SMPD4-202ENST00000409031 KIF3AQ9Y496 699 aa21.62■■□□□ 1.05
SMPD4-202ENST00000409031 LNPKQ9C0E8 428 aa21.61■■□□□ 1.05
SMPD4-202ENST00000409031 PDZRN3Q9UPQ7 1066 aa21.61■■□□□ 1.05
SMPD4-202ENST00000409031 INTS3Q68E01 1043 aaKnown RBP21.6■■□□□ 1.05
SMPD4-202ENST00000409031 MYOM3Q5VTT5 1437 aa21.6■■□□□ 1.05
SMPD4-202ENST00000409031 RNF214Q8ND24 703 aa21.6■■□□□ 1.05
SMPD4-202ENST00000409031 UQCRHLA0A096LP55 91 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms